Conserved Protein Domain Family
PBP1

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COG5180: PBP1 
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]
Statistics
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PSSM-Id: 444064
Aligned: 11 rows
Threshold Bit Score: 92.0487
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_064536579     1 MKRIWILFNFLFIFLNIFTFHAREVDKKKLKDFVNMDLEFVNYRGPYDSTDTYLQIVGIGEFLAKNLTNNKSNYYSKYYV 80   
YP_430125       70 LTSVSQKLQGLGANVLIVPATARDGRLFRLWQTQVLFAFSQKDTSGIESGLRFFYALKKREESLGLIAALVRAMLTSENP 149  
WP_123784721       --------------------------------------------------------------------------------      
WP_009946042   469 DQLATLFQLDHLATRMRRNNENLMVLSGSDLARRFTRPVPPADLVRAAVSEIEHYPRVIVQPLPEARVLGYAAGDLVRLL 548  
WP_011874729   232 NFVLTVYGPEPAWAVPFAQRLAGYLGVPVRASHAMPYYAGTGVRSMVAIDRAGRPTWRPFLHESIYLPQGAPTPCSGVAP 311  
WP_025361437   106 EEQEEPVTRLLPQQQEQPEPPGIPNPSPAEMGLASRLAGEPVAAAAETTSILPPVAREDIDPADTELADHEGQLAYVPSD 185  
WP_054293903   142 WIAAGRQAVTELANWAKQQAQTLSGLLKMAWAPTNEFLEEAAEAFLPQGITTLDGKRKDFDFKSILVEGFIGGLTSILHG 221  
WP_058884135       --------------------------------------------------------------------------------      
WP_088429118    76 VRKQQILEIRRHRTAPKPPNAPEPPQSPEEPAAIDNDEVSQGEVDALMTPPSRPEAPTRPSSTQLKPPVSRPQSPGQAEA 155  
WP_107257645       --------------------------------------------------------------------------------      
WP_120763958     1 -----------------------------------------------------MHEIANELGIDSKIALEKLKDMGEFVK 27   
WP_064536579    81 NRYIDSESEKSSSDVFIIGESSSLDSILNLRRILTGYLMEGFNYSKESAELLAKAITIYNATYRGDLDYYSDAYIQPALE 160  
YP_430125      150 PGYYIPSPWEHFKNFRYYHLLNNAGVPSVLIEFCQVELDAAFINNLTVWLVNGLTQYFREPLSEDTVVKLQAMLSGWRDT 229  
WP_123784721     1 -----------------------MQFLIGSVALATMLSASVVQGAPHGVAAWTIANTATGQFGASAGPRREADDLLRQAR 57   
WP_009946042   549 AELLDNAANFSAPQTNVMVTGHRRGDGELVIDIVDRGIGMGADELDAANDRLLSDGEIELSTSRRMGLFVVGRLAARHDI 628  
WP_011874729   312 APGLHSAGPGRYWLTEGWLVNAIPCGLLVRPAAATPESAATRLPVDPDRVSIVVTAVTRSPDEVPARVLTAIEKLARSLP 391  
WP_025361437   186 EWDEDRYLVDDVVDDLSEEDRAAAAETTGPVSADLVRRAEEAVAARAAAAAEDEPSWTGELPVIVDEPDSDGAEGQPSAA 265  
WP_054293903   222 PAHKLIQLNKHLDNIVKKPLGAGQLDAITEMPAEVIGIGIFYGAEGLANLDMLGTYISSVAMGASQKDALNRAVNRYIDK 301  
WP_058884135       --------------------------------------------------------------------------------      
WP_088429118   156 ESPQPPKPKTASPPEPEEQPAEPSEDKATAPAAKAPSKPKPELIGPPPKPTRPKPKVTNRRAQADTSEPAAKSARQPTIP 235  
WP_107257645       --------------------------------------------------------------------------------      
WP_120763958    28 SASSSIAPPVARRLKAALQADGVAPASPSPAPAKPAPRPAAAKPAPAPAAEAPAAPAPAPAETPSAPAAPAAPAAERPAA 107  
WP_064536579   161 GLSKHNVGLSRVYSQWAGKtyifvplkrnilsgniesdvDLD---Kivtdkvvisllseneevgtdfardltdvqdeird 237  
YP_430125      230 LLQSRLAEESRSTPGRPAA--------------------KLEeplQaedkitpldatieiages---------------- 273  
WP_123784721    58 KALKDGDFALADTLIGKAE--------------------KLNvqyDalt------------------------------- 86   
WP_009946042   629 DVELHPGPDGTGLRAS---------------------------------------------------------------- 644  
WP_011874729   392 ADAQQRLRLVASPWVDPASlag--------------vgaALQvpvQvltsagieptrpaakelpertrpnlgtparggtt 457  
WP_025361437   266 EEPEPVAGYLEQVADPEHAeve--------------pddALDgehSftesaqdeerrqagresaedheephdadresate 331  
WP_054293903   302 YGAPPPWVRGGGGSPP-----------------------------Pvytpgqmpp------------------------- 327  
WP_058884135     1 ----------------MAEg------------------nKLIrlnKvlrefnisldravehlaknghkve---------- 36   
WP_088429118   236 IREVDDDDDDGPKLKPk--------------------------------------------------------------- 252  
WP_107257645       --------------------------------------------------------------------------------      
WP_120763958   108 PAAPRTPGAPAAGGPRp--------------------------------------------------------------- 124  
WP_064536579   238 vdqekidie--------satlksiddeltetidnlreqleratddaekegikkqiddktVKRDALKDktdglkksqkkld 309  
YP_430125      274 ------------------------------------------tlqndetpaginvgvtgEPLEIQLTpeeqg-----kre 306  
WP_123784721    87 ------------------------------------------------------------------------------er 88   
WP_009946042       --------------------------------------------------------------------------------      
WP_011874729   458 gerkpgngeky----aeastveidraatrrpsgsapapatigrpdaeapsgaadprpvpPPTDTERP------------- 520  
WP_025361437   332 gyaesepatgymerisepegvdrgyarsaaeeqdradresvaegyaesepvtgymerisEPEDADRDyaesa-----hae 406  
WP_054293903   328 ---------------------------------------------------pysprgeqPPQGDRND------------- 343  
WP_058884135    37 ------------------------------------srptakisdaeyqilldgfqtdkSKKVASKEvsee--------k 72   
WP_088429118       --------------------------------------------------------------------------------      
WP_107257645       --------------------------------------------------------------------------------      
WP_120763958       --------------------------------------------------------------------------------      
WP_064536579   310 sSQEKLDRQRD--AVKDKVQESI--------------------------DKGNRDKNLPKPGAISSpkvdeKLQLIETIe 361  
YP_430125      307 lTPEKLTIAPV--ETVKEGQELPeavetkvneptlpsnsgteeiparisPESVGQPDTPSPGASHP-----QPENSTAK- 378  
WP_123784721    89 fYDTPAKLRKVleEEKAKASGKPaggmsl---------------psarfPALLGGKDEPQAQAIPAsp-fpAPTREEALs 152  
WP_009946042   645 ----------V--GVRAELLVEP------------------------------------------------PPSTAAARv 664  
WP_011874729   521 -ISTPVDRPTV--AIPTSAGENPttrta-----------------epvrPDTTGGADGKRAEAASSsd-vpTPSTSSATg 579  
WP_025361437   407 pEPESTNRHAV--AQDDEDHAEPeaaarh---------------aesaaEELAPAARHAEPESQSSgfvepEPQQPEHRs 469  
WP_054293903   344 -QHTPLRQPPF--GSPPPA----------------------------------TGPGGSRPPAGSPpp-ysPPGDA---- 381  
WP_058884135    73 rkeKEANRLRV--EEDQEkkrve----------------------deakKQEVLKAKAKRLEVKTVgkidiKTGKPVEDa 128  
WP_088429118   253 ---pKLRRPKPsePQQDEQPVTPe-------------------------QDDTEDSRDARDDSAREpl-lkRPSPSRSQr 303  
WP_107257645     1 ---------------------------------------------------MTDGDYHHRPPADQEprigyPPADS---- 25   
WP_120763958       --------------------------------------------------------------------------------      
WP_064536579   362 dleeqleRATDDAEKEiikkqiddklvkRDALKDKTDgpkelqrrldgqrdaaedkvqeginkgkrdnNLP------KPR 435  
YP_430125      379 -------PTLVQSQPE------------TSPLATATT-------------------------------GSPalesgtVPA 408  
WP_123784721   153 -------qLTNDSQVKarsl---------------------------------------------laeARGalaagnKPA 180  
WP_009946042   665 ngvvhneMPVSRARSEdt--------lvEEFDWDAAEqdatahetaghdt-----aaqappvrngfhlLNP------EPE 725  
WP_011874729   580 hragrtaPVTVDVQGR------------MRPFGENWRrrsrsapia--------------sepatpppSQPvtenspEPQ 633  
WP_025361437   470 eavthsaPIPVPVRPEhf--------grPIPPGPAAEavqpqpepva-----------iadaappqppTRPaaaaaeRPR 530  
WP_054293903   382 ------------------------------PPKEGWNgqqppvgq----------------ppagsppGQP--------- 406  
WP_058884135   129 -----------------------------kPAAPVKEapkavvetpkke-------ipvqeakivekqTIKvaekkiEPV 172  
WP_088429118   304 rkt-reeP--VDEEQE------------MRPKADKKSkrrqai-------------------iedddeLEEvieggsGGQ 349  
WP_107257645    26 ------------------------------PPSEwrrpggeps-----------------sapepvglGLP--------- 49   
WP_120763958   125 --------------------------------------------------------------------GAP--------- 127  
WP_064536579   436 EvnllkkdeklksaselknqlkratDDA---EKEIIKkQIDDKLVKRda----lKDKTDGPKELqrrldgqrdaaedkvq 508  
YP_430125      409 Tet--------------------lpDRP---EALTRRtKRRHRGNSF-------VPPGDGPVFIfqrppel-----asfp 453  
WP_123784721   181 Aiaayqkvla------ipaqygptdDSPqrlAADMARaGIDVTSVAP-------APSATSPFML---------------- 231  
WP_009946042   726 Teare-------------------pviP--------------------------AQPSPLPQRS---------------- 744  
WP_011874729   634 -------------------------DAP--------SpPTSVSGLAMlgs-tvsVPTVMRPGRG---------------- 663  
WP_025361437   531 Slfepvidp---------dydgsydDGPh------------------------gLPPLQEPIQPrqqasse------pfv 571  
WP_054293903   407 -------------------------------------------------------PAGLPPGQP---------------- 415  
WP_058884135   173 Kvkvqepk-----------eikikeVKPevvKAETPK-KIDIKEVKKvaetkpeEAKAEKPVEIt--------------- 225  
WP_088429118   350 S------------------------DASsnlSVSLARpPKQKKASASk-----pSAPATRSYKPpsr------------- 387  
WP_107257645    50 -------------------------------------------------------PVSGYPVRP---------------- 58   
WP_120763958   128 -------------------------------------------------------RPGNNPYAP---------------- 136  
WP_064536579   509 egiNKGKRDNNLPKPREVSllkk-----deklKSAse--------------lKKQPKR-----------ATaDISKNi-- 556  
YP_430125      454 slfPREVLERMLPAAVQSTfntt------ipsRKP-----------------AASPIV-----------AR-QEPQPv-- 496  
WP_123784721   232 ---RPSDIDPAAQRLPIDG-------------QAP-----------------VAAPEAa-------------MVQQN--- 262  
WP_009946042   745 ---PGGHGNNGTPRHESVN-------------GTPqr-------------atNGTPQHe-------------SAGGP--- 779  
WP_011874729   664 ---PQAATTARTA-GGQA----------------P-------------------VPQS-----------QSvPQSQP--- 690  
WP_025361437   572 ptlAPGLLDGTAPKPPMPTg--------------P-----------------AGLPKRt---------vGS-EAWPRmd- 609  
WP_054293903   416 ---PAGLPPAGSP-PGQP----------------P-----------------AGLPPA-----------GS-PPGQP--- 443  
WP_058884135   226 ---AENAVKLKTQYKKLDGpkitgikidlkqfERPk----------------KKKPEA-----------KT-DADKRkrk 274  
WP_088429118   388 -drSGSSRQQRRERQEQATq-----------qERPeiltltseltvhelaakIVVPETdiikslffkgiAA-NINQTld- 453  
WP_107257645    59 ---TGYEPDPGRHQPTQPA-------------YQP-----------------AGYPPAg-------------GYGQP--- 89   
WP_120763958   137 ---SQGMQRPGAPRPGNN----------------Pfs-------------stQGMPRP-----------GG-GAIPR--- 169  
WP_064536579   557 ----PSVVNNQSRr---LPAKPLAFRKQSDQseg-----------------------vdKLPLET-ENQKPIH 598  
YP_430125      497 ----PSDLPLFNP----EPVKPLVQTTADGSdstlve-----------------lknlgTAILTPeQFQEPQN 544  
WP_123784721   263 ----PSPYALPEGp--sNPLNP----APRVG----------------------------GGSFQP-ADAASQP 296  
WP_009946042   780 ----PQHAAPGTTa--fQPGANGAVFQPGANgaalh-------------------gganGAAFHGgPNGAVAH 827  
WP_011874729   691 ----PSHSQPARE----VRRQP-SQSAPDPA----------------------------PEPSTP-GSGgyye 725  
WP_025361437   610 ---tGSRSPLPQDa--pQPFTP-QPFTPQPApfrpraqfsplprtgdkapirrpsgggpRTPFGP-GSALPKP 675  
WP_054293903   444 ----PAGLPPAGS----PPGQP-PAGLPPAG----------------------------SPPGQP-PAGLPPA 478  
WP_058884135   275 riskPG-----------TPTKPGEKRVVRPAqnrs---------------------ggnRTPFrgraaqrpav 315  
WP_088429118   454 ---vPTAKMVAEEfdilVETAEAESEAKKITemlddsdleslvrrppvvtimghvdhgkttlldsirktkvaq 523  
WP_107257645    90 ----PTGYPMPGGha-mPGGYPVPGGHSSAGgy-------------------------pVPGSHPsPGGYPVP 132  
WP_120763958   170 ----PAAPRPGAP----RPGAP-RPGAPRPG----------------------------GAPFQqrpggpgrp 205  
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