Conserved Protein Domain Family
TFB2

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COG5144: TFB2 
RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB2 [Transcription / DNA replication, recombination, and repair]
Statistics
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PSSM-Id: 227473
Aligned: 3 rows
Threshold Bit Score: 610.791
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6325135    1 MSDYSLKHSVTQYLEEIPQQVQNRLYTSPATCLAIYRILPPLAKFFIMAMVFNENEVPLLDLDKWVNSNGKLQFQNAIKS 80  baker's yeast
19075077   6 SQAWPYPIDIIEYFEMLPRHSKTQLYGAPIFAVSFLKVFDEKTTKFVFDLLLKSHSISSLREIEGIKETLKILLRIQVIG 85  Encephalitozoon cun...
19113355   1 -MQAEFKSSINDFLEQLPN--HARLYQKPAACLAVFRLLPILARQYVMSMLFNPMPVALSDFDLWIKLSSKVYQSESFNK 77  fission yeast
6325135   81 MKSLHLLIPNKssgtLMINLNPTFKISLRNALTGGEVQNSFGV-VVEEN--VVSLDLLDEYSANKWETILHFMVGTPLAK 157 baker's yeast
19075077  86 KKGNNIYLDEG------FRR------SLMDGFCMLTMERHYRS--IGEK-----VEMDESESSRKFEAILGSVVN-RECR 145 Encephalitozoon cun...
19113355  78 LVRMHIFQFDG----QYITLNSEFRKQFITALTGGGNHNSFGVpCTDEDkhLVTVDFLDAYAKETWETILHFMVGTPEAK 153 fission yeast
6325135  158 IPSEKVLNLLKHSKLMEEVNStgEFKITNEGFQFLLQEINSQLWTLLLQYLKMIETSKMDLVDVLHFIFMLGALEVGKAY 237 baker's yeast
19075077 146 IEAFGVSEVLMFGGLLGRDRN-----ITNRGFEFLLKTKKEQLWCLVLLSLKYFLGSVEEEIAVLEALFELSARAVGTVY 220 Encephalitozoon cun...
19113355 154 FPGEGVLSLLKRGGLMSGPKN--QLRITRAGFQFLLQDINAQIWTLLLDYLKLSEDTHMDPVQVLHFLFMLGSLDLGRAY 231 fission yeast
6325135  238 KIDALSETQRIMLQDMRDYGLVFQKHSNDSIFYPTKLALMLTSDTKTIRSasnamdsvlRQNREEpsvnedgangksttd 317 baker's yeast
19075077 221 --------RQVDQMDRRLFKYLEALGILR--LYEKGLAIGRSFVQLFEAS---------ERNRRE--------------- 266 Encephalitozoon cun...
19113355 232 SVDFLTDTQQIMLEDLREYGLVYQRKITSKRFYPTRLATGLTTDYRSLHG---------KQSEND--------------- 287 fission yeast
6325135  318 ittsDDLnkaglknqdipdGSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITADQII 397 baker's yeast
19075077 267 --------------------FIIVETNNKIYAYTNSEYEKSVIHLFCNVTVNLPNLIKGIITEESVNVAFDKGITGKQII 326 Encephalitozoon cun...
19113355 288 ----DDK------------GFIIVETNYRLYAYTSSPLQIAIIGLFANLRARFSNLVVGVITRDSIRRALMNGIAAEQII 351 fission yeast
6325135  398 AYLETHAHPQMRrlaeekleKKLELdpnckeplqvLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQD 477 baker's yeast
19075077 327 HFLEASVRQGSL------------------------PPAIRNQIVIWESKRNRIFMVPGYLYSNFLNLSDYQKVLEFCIR 382 Encephalitozoon cun...
19113355 352 TYLTTHAHPQMR--------SNVPL----------LPPTLVDQIYLWELEKNRLRATPGILFRDFLTDSGFDQAVEYAKE 413 fission yeast
6325135  478 IGVLLWKDDKKKKFFISKEGNSQVLDFAKRKLKK 511 baker's yeast
19075077 383 GNHLVESDVDKRMIVVKLEGHSLVKEFVKTIL-- 414 Encephalitozoon cuniculi
19113355 414 LGVLVWDSSLKRMFFITTTGAQPMIAYLKRRAVK 447 fission yeast
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