Conserved Protein Domain Family
RPO41

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COG5108: RPO41 
Mitochondrial DNA-directed RNA polymerase [Transcription]
Statistics
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PSSM-Id: 444054
Aligned: 6 rows
Threshold Bit Score: 1247.5
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_051909251   1 M--------TSHDLTNelflaahgclptehpGWEKQIALEDEMRSAGIARFEKALEKNQTRGNESSNLSSRRMIIHAHEM 72 
NP_744415      1 MttsmtplvGRLDGED---------------LIATQVRLEEEMTQRGVSRFQRNVEAARRMGAEDGTEYGSIIVSGRMKA 65 
WP_012172130   1 M--------ETLSTT----------------ALDRQIALEEQMLMVGRETFYRDIEKAKERGEEAGTPYGMRLLKNLVLP 56 
WP_013045268   1 Mr-------ARIDLKKy-------------iPTADDYKLEQERAEAGRSYGVERSVKQRKRQDFSTRQSAQSIISDAVPL 60 
WP_075799312   1 Mdg-----lAHLSVD----------------VVARQLALEAEAVDAGQARVREMIAKARAQGEEADTRYGRRATSAFLED 59 
WP_106418304   1 M------------------------------------------------------------------------------- 1  
WP_051909251  73 VVAGIKAFLE-EASSGKAGKKHTAVAYLRDADLDVVAHLALRNLFDCVSTRTKITPLSIRIASMIEDEMFFNAFRDQDKD 151
NP_744415     66 LAEAIKAWMD-ESEAGVSSRWGSAYKLLRGYDADVLAYLTLKHTLAGISQPRTLQHVSVSIAQSVEDEMRLSGIRDKERK 144
WP_012172130  57 VSDALEAFIE-KARSGGAGRRHTALKYVEMVEPEVAAYLALKTVLDSITRRETLQRCAIRVASALQDEVRMRAFRERHPE 135
WP_013045268  61 IAEEIQATID-NHKPKNPTNW---YPFIYELDTEMLANIAIRQCVKAVGSRHSRPAVGKLIGRMVEANVMGEVIRQAFKD 136
WP_075799312  60 LAAVIEATKQtDSSTGGAGNRRAHAAYLGLLPAETVAYVTLREIINTLTQAVTLQKAANRVASAIENEYRAKLLEEASPQ 139
WP_106418304     --------------------------------------------------------------------------------    
WP_051909251 152 AYEFARKKIGEQTHNavHQ-KRAMTKH---AKHKGAEWQ------DWSVEGKTAVGLKLIEIVVEATGLFETVR--QSEG 219
NP_744415    145 KYDQLVERANKRSSQ--RH-KHIYATR---VASALDTWS------NWSNNDRIHVGTKLLELLMNSVGLIHIAT--NGEG 210
WP_012172130 136 RFKVTMSKIERATSR--RY-KTTVARL---MAGRVGIDE------DWPTSDKLHVGIKLIEVLREATGMVDIQR--DTMG 201
WP_013045268 137 FHPRGKKEYKSIYNRavKR-SDDFERRlhyVKNQVAKEEitmdflDWTEKQCMEVGFHLIKCVTQSTEVVEVYDywDTNK 215
WP_075799312 140 DYSKMTKKMETRTRRnvEYaSKRIEAG---LKRAEKVEA------KWPVSDKIHLGVLLIGLVVEKTGLVKTRR--EARS 208
WP_106418304   2 ---------------------------------------------------------------------IEIAE--KSLA 10 
WP_051909251 220 VNNTNIYVVATKDTME------------WLATENSRLAPLSPVYLPTLLPPRPWTSPFRGG-YWSGRV-RNLRLIKTGN- 284
NP_744415    211 TEKALKYVKPLESTLE------------WIARKNNVTAMLRPVYEPMVVPPRNWTSPTDGG-YLSSSL-KPLRMVKTRN- 275
WP_012172130 202 INDTQVFVVATEATLQ------------WIADANQRMEFLSPAFLPTIIPPKRWTTPFDGG-YHSGLV-QRLPFVKTRN- 266
WP_013045268 216 IKDMSHRFRYTAEIQN------------RIDEADLEFDLSSPAFRPMVVPPINWGTANHVGpYYDTETaIRAPLVKNVNp 283
WP_075799312 209 ANDTPTVLLPTETTLE------------WIRGEEARALMSATFLWPMLCPPRQWAAGDGGG-YLSPRM--RLRLVKTRN- 272
WP_106418304  11 YDDQPVFLRIQETRRSpyrielgptikaWINQYSDFMSHLHPDYMPCVVPPRDWEGPKRGG-YFTREIaRTLPFVKVRR- 88 
WP_051909251 285 ---RQYLTDLDSIDMPKVYHSVNAMQNTAWTINRRVYDVMTSLWDN--RstlACLPQADDIALPEKPmwltp-----emk 354
NP_744415    276 ---RAYLEELGNVDMPMVYTALNAIQATAWQINTPILNIMTTLWEQ--GatwCGLPPREGIPQPVKP------------- 337
WP_012172130 267 ---RNYLEELAGRDLSAVYAAVNAMQETPWQVNRDVLRVLKEAWDRdlKspkLKLPPRDPLDLPPKP------------- 330
WP_013045268 284 nqrKKIVKALKTGSMKECLDAVNTLQQVPYTINRYTLAAIKWVVESklD---VEIEEFVPVTPPIIDen----------- 349
WP_075799312 273 ---KAYLEEIENLDMSRVHAAADAshvqirqasgftigvqlfgdsngcedsdlhlgrlidnkvgldlrtgtsigwcnslr 349
WP_106418304  89 ---RKHLDLLTRQQMPEVYEAANALQRVPWKINQAVLAVAERIQARdlA---LGMPQREPFEPELAPvpaefrglrgpel 162
WP_051909251 355 rEDMTVEQVDQfMRWKSERTAIYEANARAVSKRLAFSRMLWVAERF--KDEEEFFFPHQMDFRGRVYAVPlFLNPQGDDA 432
NP_744415    338 -FDIDTNEVAR-AAWRKAAFKAHSDNLEIQGARINVSMSLDIANRY--SPFRKIYFPYQLDFRGRIYAVP-HLNPQGADH 412
WP_012172130 331 -ADIATNEVSR-KEWKKAASLIHAANAKLKSKRVQIRKIIELAGQF--SEYAEIYFPYQLDFRGRVYAVPmFLNPQGPDH 406
WP_013045268 350 dKDGTPSQV---KRYYRAQRKKSIANANL----VQFQTDLNEAESLcdKDDRRFWLPHNFDFRGRVYHIPaF-GHHRQDH 421
WP_075799312 350 fygghfacqsttnmtldrfgvrlsradgaytlhnalrfygpsfelqrgagteaspsrtaipflvevdavasvtwntttpa 429
WP_106418304 163 rEALTDAQLADfKRWKAETREVYRKERKRCAQVDEVRRVLAQAKRF--SIYPALYFVYTLDSRGRVYCRSsLVGPQGGDM 240
WP_051909251 433 AHGLLQFANSVPIGDEeGANWLAIHGAGLWG----------VDKCSMEERVQWVKDNEEGILASASDpYDN--RFWL--- 497
NP_744415    413 TKGLLRFAYGKPLGEH-GAKWLAIHGANVAG----------YDKASLEDRVKWVHDHQAEILAIAADpFQA--RGWAdhv 479
WP_012172130 407 AKALLTFARGKPIGDGvAAGWLAIHGANVYG----------YDKASLEDRISWVEERNALIASVAADpWGEgfEFWT--- 473
WP_013045268 422 IRGLFMFADKKPITKD-NLKHLYFQIATTWGnqvsetderkTDKITLDERYKWVEDNYEAILLAGKD-YVAgfEHWS--- 496
WP_075799312 430 anataytsvttafanaypgdiaeaawsaastlrlsaqvsatqgvtlychnhsaaalsslssgpinirvtkrra------- 502
WP_106418304 241 QKAMVHFAKALRWATGaGTGWLctgrgvgqrqgvlrraravhrrghagdhqghrsgpadlpgldnrgqalavpgvvlrvv 320
WP_051909251 498 ---TAEKPWQALAFCHEWDGYRAEGYSYESHLPVQMDGTCNGLQNFSAMLLDEIGGAAVNLVPGDKPNDIYATVAEVLIK 574
NP_744415    480 gaqAIDKPWQFLAFCLEWKGYCEHGDRFVSKLPIAMDGSCSGIQHFSAMLRDEVGGAAVNLVPSDLPADVYGLVAKKVIE 559
WP_012172130 474 ---EADKPWQFLAFCFEWAGFLREGFDYVSTLPVALDGSCNGLQHYSAALRDPVGGAAVNLVPSGKPQDIYARVAEVALG 550
WP_013045268 497 ---KADAPIQHLAACRELYLADQHGEGYLCGLPIGFDGSNSGLQHYSMLMKWKEDAFKVNLVPNHPPQDCYSFIAEADMN 573
WP_075799312     --------------------------------------------------------------------------------    
WP_106418304 321 ghagprcrrqtckrfrvpypsrdgrlvlrypalqrdapgparrnlcepm------------------------------- 369
WP_051909251 575 KLqeiseACPEDTTTKEVLDketkepktiiveSD--GSMARKWLAYGITRKVTKRPVMTLAYGASEFGFREQVFTDT--V 650
NP_744415    560 RA-----IHDAKHGTEDVLKhdadgk-ayvqeGT--KNLAQQWTRFGINRKVTKRSVMTLAYGSKEYGFKDQVMEDIldP 631
WP_012172130 551 LVta--fVCPNGSTTGTIPNlsrlrk-twaehGIdeLDMANRWLAFGIDRKVTKRAVMTLPYGSTQYSCREFIEE----A 623
WP_013045268 574 LAqrivdGECDELNENEITN------------AI--MDDCHNWLKHGITRKQTKKNIMTWPYSVTLIGMADQNRDDMeiI 639
WP_075799312     --------------------------------------------------------------------------------    
WP_106418304     --------------------------------------------------------------------------------    
WP_051909251 651 TPWKQSAGEA------FPFE-GTG---FSAASFLGLLIWDCVGEVVVAARGAMDWLQEVAKIAAKEGLPVIWNTPTGLKV 720
NP_744415    632 ARKKATDAEGnvdarhFPFT-GDG---FRAAGWMAKAIWEAVNQVLVKAGEAMKWLQDAATLAAKEELPVCWTTAVGFPV 707
WP_012172130 624 VREKVEEGKP------NPFAvGDSdgiFKATLWLQPLVWQAIGEVVKAARVGMDWLKECARLAAAEGLPVIWQTPDGFLV 697
WP_013045268 640 TDKAEEEDAP------HPFGeDRG---SSASMTLAKLNSDSIKAVVASGARGMEFLRDLAGILASRNVHAEWTSILGFPV 710
WP_075799312     --------------------------------------------------------------------------------    
WP_106418304     --------------------------------------------------------------------------------    
WP_051909251 721 MQEYTSSEQKRIAL------TFQKVRMRLSLDVATKKIDKRKQGSGISPNWVHSMDAAHMQLTVSRCHDEGIRSFSLIHD 794
NP_744415    708 MQAYNSVVARRVKT------AINGARVRLLMNEEQDALDKRKQSQGISPNFVHSCDAAHLMLTVVRGVESGLKSFAMIHD 781
WP_012172130 698 QQSYRNSSARRIDT------HLDG-RVRLIIREELDTIDKRRQQQGVAPNWVHSMDATAMRMFINLALTNGMQHFALVHD 770
WP_013045268 711 GQDYRDMKKVTINTeyidrkTTRKVRYRGTLRAKQPTCETKGSKNGIAPNFVHHMDSTHLMMSVNKSNEYGASNLMCVHD 790
WP_075799312     --------------------------------------------------------------------------------    
WP_106418304     --------------------------------------------------------------------------------    
WP_051909251 795 SYGTHAGNAWAMAQFLREEFVRMYGD----HDVLQSFKE--EIAMMLGVDHEA-LPTLPKKG----SLDLSQVLESPFFF 863
NP_744415    782 SFGTTAGETELFFMTVRKAFIEMYEE----TAVLERFRD--ELAAQLSDKARAkLAELPKRG----SLSLAAVAESRFCF 851
WP_012172130 771 SYGTVAADVELMGACLRKAFVQLYTD----CDPLAEFRV--DIAGMLSDDALGdLPEVPAKG----TLDVSLVEESDFFF 840
WP_013045268 791 SFSTDIESASVMLDCIKVTLIELYEEvchySNLLEDCKSlvEYSDNPDDPDYIeWPEVPEKGegdnALDVRAILDCDYAF 870
WP_075799312     --------------------------------------------------------------------------------    
WP_106418304     --------------------------------------------------------------------------------    
WP_051909251 864 A 864
NP_744415    852 A 852
WP_012172130 841 A 841
WP_013045268 871 A 871
WP_075799312     -    
WP_106418304     -    
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