Conserved Protein Domain Family
COG4983

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COG4983: COG4983 
Primase-polymerase (Primpol) domain protein [Mobilome: prophages, transposons]
Statistics
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PSSM-Id: 444007
Aligned: 44 rows
Threshold Bit Score: 193.239
Created: 9-Feb-2022
Updated: 24-Feb-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_096389989   83 P----TDLAEHgARWLLWQY------SDDRKVPRNp-----------SWGYsnq-dvgYAf------------vGAKDPN 128 
WP_041353982    4 Pa--iKALSRY-AQWVIWKk------ERDTKIPYNp-----------NNGK-------KA--------------SSTDPL 42  
WP_011628388   55 P----LDLVDM-PIWCAWKLvqkpgkPKPDKVPVSa-----------ADGLqg----sKAwg----------gkKNPKPE 104 
WP_012205264    9 P----QVLRQR-KQWLVWRLvkkpdePKPRKVPFYang-------apRNGE-------QG--------------TAEDLA 55  
WP_006057199   18 P----EEMKEF-DHWVLWSPe----fGKQIMAPW-------------VTGHcypaswgEQ--------------ETERPE 61  
WP_008525225   31 P----DELTEN-ERWMg--------aQEGVKYPFApwgtrdppveciDDDC-------PAdrcddpcctcdgryKWSHEG 90  
WP_067473435    1 -------MRSR-DRWT----------RADGKRPVQ------------VGGG-------PA--------------SSTNER 29  
WP_083670656    5 PfvtiEQLSIY-PQWVAWQEelrqgqEEPTKTPYSp-----------VKWG-------RA--------------KADDPQ 51  
WP_119816680   45 P----DSLEDE-ACWIVYTR------KGDDKIPSDpr---------sPVPS-------YV--------------DGTDPD 83  
WP_066523694    8 S----AALKES-ALFCVWKKee--rgGKPTKIPYNp-----------ITGG-------KA--------------QPNNKA 48  
WP_096389989  129 AWFDFETASNW--VDHDD---------DLG-----------FAYYLTgpdrddwdddekyawvdpEEDvpsepHVGLLDF 186 
WP_041353982   43 AWGDIDEAQAG--LVRYG---------ANG-----------LGFVLT------------------KSD-----PFVFIDL 77  
WP_011628388  105 FCTTAEKAIYY--ANQAKd--------ITG-----------VGIILM------------------PGF-----GLIGGDL 140 
WP_012205264   56 QLTTFDAAVHA--VRERG---------YTG-----------LGFAPI------------------ANG-----GIVALDF 90  
WP_006057199   62 T--TFEKAKMLadLPTEEvhrtypfppKDGeeephvperiiPTFLLLhd---------------pPEP-----PLMQVDF 119 
WP_008525225   91 HYRTGDKVDLV--IPTGE---------IEH-----------RAYIFA------------------EDD-----GLLFIDG 125 
WP_067473435   30 TWTSWGKVRSGa---------------GDG-----------FGFMLG--------------------D-----GVGCIDL 58  
WP_083670656   52 TWGTRAQALER--LERLPkp-----yaAYG-----------VGLEFAplev-----------pgmAHL-----ALSGVDL 97  
WP_119816680   84 YCVTFGEALDT--VAESRrrfg-hddgLGG-----------VGLCLG------------------ATD------VCAIDL 125 
WP_066523694   49 TFAPFQTAATV--MES-----------YDG-----------LGIGIF--------------------D-----GLCAIDI 79  
WP_096389989  187 DDIRDPETGDIAPGAIN-LLEQLtGTFCEWSPSGTGAHAL----------GGFRL-PKG----------VTTltidls-- 242 
WP_041353982   78 DHVLDENKRVKCEWARQ-LLKEI-KSYTEISPSGDGLHVV----------VSGKL-PDY----------IKHktk----- 129 
WP_011628388  141 DGCCNSGTGAPTEQARR-IIEAA-DTYTEVSPGLEGYRFI----------ARGTF-GGHt--------gNNR-------- 191 
WP_012205264   91 DGCVSG--GQITDARIEaLIS---DTYAEFSPSGTGLRAF----------YLGAM-ASRkdn----ahkSKRvg------ 144 
WP_006057199  120 DDVRDPASGCVSEEVEE-IVERL-DAFTEVSQSGEGLHVF----------VRAEL-PGG----------LGKfiae---- 172 
WP_008525225  126 DDVRCPETGDVHPAFKA-FLATLgATWCEVSKSGSGIHAV----------YTGAL-PAVa---------KKEpvlqldde 184 
WP_067473435   59 DHCLDENGAVVSTVAAA-VLDANpGAWVEVSRSGRGLHVW------------GLL-PEGs---------GRR-------- 107 
WP_083670656   98 DCCRDKETGRIEEWAWE-VIRRF-NSYTEVSPSGTGVKTFflhvtadwplIEPALgPTSkngrqfkrgtGRH-------- 167 
WP_119816680  126 DDVIDED-GELDELAAD-LVDDI-DSFTEVSPGGRGLHIL----------VRDEQ-GVDd--------dHLQ-------- 175 
WP_066523694   80 DHCIKD--GKPSEMAAD-IISTM-DSYTEYSPSGSGVHIY----------FTVSA-GFQynka--kyyiNNQ-------- 134 
WP_096389989  243 ----spewpDAE--------LEMYP---GRRYTTVTGDHIPGT-----ETSTR--DIQGIVDDIVATHpgaLDAARasap 300 
WP_041353982  130 ------fddGSA--------LEVYE---SGRYMTITGEVFDGR------DDIK--ELDLSILGEFAEHk--IETKNapvq 182 
WP_011628388  192 ---------AEG--------VEFYE---DGRFLTITGYHVEGT-----PHAIE--ERD--LSELGAEY---FDKASsdtk 239 
WP_012205264  145 -------gqAGAarldglfdIEFFG---HNGFVTVTGKATPDTqlwglQDTVA--PLSQGVQQLYAQR---FGDTGplpa 209 
WP_006057199  173 ------lddVGE--------IEMYD---HGRVVGATWRHVEGT-----PTDVP--ERQDVVEDLIKTY------------ 216 
WP_008525225  185 awgenddgdLPQ--------IEIYP---TKHNSVLTGWHVPGT-----PVEVNa-ADETALRPILDAH---GKTTDprk- 243 
WP_067473435  108 ---------VEG--------CEVYS---RARFMVVTGRVFRAGrl--vPLTVP--------------------------- 138 
WP_083670656  168 ---------PPA--------IELYL---RARYFAVTGERLDEI-----TNEIRvvPTDDILWVIQDAGp-aFKAGGtrpe 221 
WP_119816680  176 ---------KDV--------IECYD----ERMMTFTGRTLRRA-----SREIV--NCPGLVGAYQSLY---NGERDtdgd 224 
WP_066523694  135 ---------KSG--------LEVYIsgaTQKYVTVTGNAIGTR-----V--IM--ERGEQLQKVLDKY---MLRRKpde- 184 
WP_096389989  301 sdr--------------pdeldrtPDlskADLADI-ETTSDIQDVFDAIQHtGPtdihlRSTVt-HERSDGSLDLDp--- 361 
WP_041353982  183 ie-----------------sattlDD---EAIIDL-MKRK------------GQwp-daPKDG--DDWSSLDMSFAnrla 226 
WP_011628388  240 age-------------------------------------------aepetgGG-------------------------- 250 
WP_012205264  210 vgavalageanlaalgpeklgwtmDQa-rEYLFDC-KASVSRAEWLNALMAl-------HHEFd-GSEDALDLADE---- 275 
WP_006057199  217 ------------------------ES---EEYRQR------------RLRS-SS-----------EDASET--------- 236 
WP_008525225  244 ---------------------nttQDv--QELt--------------R-------------------------------- 254 
WP_067473435  139 -----------------------------AGVLDAa-------------------------------------------- 145 
WP_083670656  222 etidmgfdi--ppggvfedqpppgGD----DLMDRlAAAMKRRKKVAARWN-GN-----TEGLedTSRSGMDMSMMam-- 287 
WP_119816680  225 esaetgst----saptertsrgelGDv-lEDIVDTa---cEYDGDFEVLWNrGSta-wdSVTWn-HDRSRADMSLAskih 294 
WP_066523694  185 ---------------------------------------------------------------arGKHEQTSFSLSdddt 201 
WP_096389989  362 sWAQs--------KSGTRLAQV--------GDGWVYRk---------------------gMHGLDALQVV---------- 394 
WP_041353982  227 fWCG---------KDIERMDRIfrqs-plmrQKWDrpt-------------------agsTYGRITLKKAcdfvdsvyd- 276 
WP_011628388      --------------------------------------------------------------------------------     
WP_012205264  276 -WSAtgdsya---------------grkdvEGRWDSFgrdrggapitgrwllswrrdqmaASNDERMRGAlaemqrllke 339 
WP_006057199      --------------------------------------------------------------------------------     
WP_008525225      --------------------------------------------------------------------------------     
WP_067473435      --------------------------------------------------------------------------------     
WP_083670656  288 ---------------lRRVGFKfeec-ktilLRWPHGagstk--------------agddRYWLRMWERGakpedmarae 337 
WP_119816680  295 wWCQesdafaeeeISRSEMERIflesdlaqRDKCQDRt----------------------DYVSRTFDKVqr-------- 344 
WP_066523694      --------------------------------------------------------------------------------     
WP_096389989  395 ------------------------ALEEriisseteypsd------------edfwaavdalrdRGAHIPEYEPDGADPV 438 
WP_041353982  277 --------------------------------------------------------palrnesdCPFEPYNEEGGPRNDK 300 
WP_011628388  251 ----------------------------------------------------------------RGLEAFELPPHVRGWI 266 
WP_012205264  340 a--------------pdmltlqtrvMPDvsr------------------------------lllEFPILEIEAYSLVAGR 375 
WP_006057199  237 ----------------------------------------------------------------DWNSDVSGIEAAIRNR 252 
WP_008525225  255 ----------------------------------------------------------------GDADATVDADVVTDME 270 
WP_067473435      --------------------------------------------------------------------------------     
WP_083670656  338 tranmpvirvvkgslshivdqaeqALIQaglglyqrgsmlvrpgiarlsaakdemteaqeamalGEMAMVEAMTTAAVWE 417 
WP_119816680      --------------------------------------------------------------------------------     
WP_066523694      --------------------------------------------------------------------------------     
WP_096389989  439 SALPLAKLDALDDDERQRAAAAQDIEWPSTDEARERLWNRLLDAVRHQEEVVIDAPTGLGKSYTVATEPWLHHADCTGEQ 518 
WP_041353982  301 EEKDPLWLYKVLLTKGIEVWFDIKLEKYGIKRNNRVDYIAKSSLQQIVFEIIGKTPKNIAVPTYIGAYEPSKPEKWEEEG 380 
WP_011628388  267 TDGVEQGTRSDRIFQCAKDLVRAGATEGEAVAILANPEHGISDKPLQERGGDIQGARQWVQRYAVAPARRDVEAEPDEFD 346 
WP_012205264  376 AKEFGLAINKTEFKKLIKVERPPAAAAVAPLTEFGNTERMLARYGDSLMFCPDTATWYVWTGVYWRTAMGGNTEVAHYAK 455 
WP_006057199  253 ENDSSSSGRSPYFDIDIRSIADTGDFSRYRRETPGDEWQGPHPAHGPMHSDPEECTNFGVEPSGNTWFCFAHNAGGRAIE 332 
WP_008525225  271 DVFTAVNNLDARDVADATIVQSWSDPAGTEFRAFLPTWGTSSDGGTANFVTEDVWKDKGQDSGHGGPLIMAAIDLRILNH 350 
WP_067473435      --------------------------------------------------------------------------------     
WP_083670656  418 KWDGRTDDWVVADAPKDIARIYMQRVGRWRLPVLAGIIASPTIRKDGSILATEGYDAKTGLLLEFRGQTFPPVPDRPTPQ 497 
WP_119816680      --------------------------------------------------------------------------------     
WP_066523694      --------------------------------------------------------------------------------     
WP_096389989  519 PVVHFSPTRDARDAAIEHSREASGVTHAVLRGRKEACPVAHGIHDPSEEEGDEEDETVEITMNRTPASQWFDAVCDGRGV 598 
WP_041353982  381 IKYINLFKPTPLMKVKPVKEMPEIVKNLLLNLFDYDAKSMGLFINWLAFIYQYKERTGVAWIFMGKQGTGKGLLVDLLKK 460 
WP_011628388  347 DETGSTETAGWPEPVDLFASRPVPPFPAQVMPEAWQRHAAGLSAQTGFDPGGYLFVMLAHAGCLMDHRTRVAVNSSWREP 426 
WP_012205264  456 ETIKDLPSEAASHADPGEFFAFCSLSQRAAMVAAMVKLAESDPRVCVPSSELDKHRHLLGVKNGVVDLRTGVLMPASPEL 535 
WP_006057199  333 LAAVLADEVDVSCADIPKRGAGQGWLGDRPVKMLKTCLWLRDHAGVPDDTKPPHAALLGVADVEDLYVRDRDRGILGEKN 412 
WP_008525225  351 DGAEPGDVTGRDAHRCLDHLRDLGFDVPEYVESGDTADLYMDVLGEYKDAGTNPWENPDACLVASIEAREAGAVTPEADA 430 
WP_067473435      --------------------------------------------------------------------------------     
WP_083670656  498 QAEAALQVLIHLIQTFPFEKPSHRSVMLSAILTAVARRSMDTAPLHGFSAHTAGSGKSMLVNIASMIATGQKAPVIAQGD 577 
WP_119816680      --------------------------------------------------------------------------------     
WP_066523694      --------------------------------------------------------------------------------     
WP_096389989  599 PFSTAHAYLAEHNDQDIELPCSRGDDPCPAIGQWDGLPRTEEGDPAV 645 
WP_041353982  461 IFEEHMSSNITDANLDSQFNPYLYNKLIVHLNEVSADNRKSRMLVKN 507 
WP_011628388  427 PLHWAALVDSSGGGKTPILGAAGKPAMSIYSEINKRSARELMEWHKA 473 
WP_012205264  536 RITLSAGCEYNPGAKCPLFEQTLRDVFFDDLEMVEYVARTFGYALQG 582 
WP_006057199  413 AELCRRVFDEMTLDYFE------------------------------ 429 
WP_008525225  431 PTLALHAIIEDVLGVSADSHAVTDRTYGTAQAVFDDMSVEDARDVTD 477 
WP_067473435      -----------------------------------------------     
WP_083670656  578 KPEEFEKRLVSMLRQANAIISIDNVNHVLDGDLLNQMLTEPVVRGRI 624 
WP_119816680      -----------------------------------------------     
WP_066523694      -----------------------------------------------     
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