Conserved Protein Domain Family
Rnb

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COG4776: Rnb 
Exoribonuclease II [Transcription]
Statistics
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PSSM-Id: 443808
Aligned: 52 rows
Threshold Bit Score: 851.836
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011200641   1 MFQNNPLLSQLKQQLHDSKPHVEGVVKGTDKAYGFLETEK-ETFFIAPPAMKKVMHGDKIKAAIET-IGDKKQAEPEELI 78 
NP_240090      1 MFQNNPLLTQLKKNLHAKSPRVEGIVKSTERGFGFLEVDPqKSYFIPPKNMKNVMHGDKIIALLTT-EKDREIVEPEKLI 79 
WP_011770571   1 MFQNNPLLSQLKKQIQEDIPKRQGKVKATDRGYGFLETDKgKRFFIPPSEMKKVLHGDQINAFIRG-KGDKSTAEPNQLK 79 
WP_012621771   1 MFQNNPLLAQLKQQIEASKEYVEGVVKTSDKSYGFLECEK-NSYFIPPAEMKKVMHGDKVKAVVKR-DGDKEQVEIDSLL 78 
WP_025328962   1 MFQNNPLLAQLKQQIEASKEYVEGVVKASDKAYGFLECDK-ESFFIPPPEMKKVMHGDRVKAVVKR-EGDKAQVEIDSLI 78 
WP_025316074   1 MFQNNPLLAQLKQELHQQTPRIEGTVRAHEKGFGFLDVDNkTSYFITANKMKTVCNGDKVSGTVIE-NGDKKVFEPESLI 79 
WP_039104062   1 MLQNNSLLAQLKQQLHQQTPRVEGTVRAHAKGYGFLETENkKSYFIPATQMKNVIDGDKVSGQIIT-KNEKESFEPETLV 79 
WP_041068705   1 MLQGNPLLKQLKKQLNAKMPRVEGVVKCT-KNFGFLEANSkKNYFIPPTNMKKVIHGDRIIAVIHTsEEKREIAEPEILI 79 
WP_041063309   1 MLHDNPILIKLKNKFKENFLRIEGTVKKNNKGYCSLETVHqKSFFIPSSLKNKVMNGDKITALVYL-SENCNKAEPEKLI 79 
WP_083481460   6 MLKDNPLLAQLKQQIRETIPTVEGVVKATEKNFGFLQTDNkKSYFIAPPMMKKLVHGDRITAALRE-DKGKESAEPESLI 84 
WP_011200641  79 EPMLTRFIAKV-RFNkDKKLQVLVDHPNINQ-PIGAAQAKTV-KQELKEGDWVVATLKTHPLR-DDRFFYAQIAEFICSA 154
NP_240090     80 EPFLNRFVGKI-EKK-DNRLFIVPDYPFLKD-LITCQPNKNC-INIFQNGDWAVAQLKKHKLK-GDHLFYAELTEKITQE 154
WP_011770571  80 KTGSAVFIARL-VIK-QKNISIIPKNPLLKG-FFKIKGSQSLqSRGYQDGDWVKVELVSHALE--GNGFLTQIIEKIADA 154
WP_012621771  79 EPMLERFIAQV-RFNkDGKLQLAVDHPSINN-FIPANTQKKV-TEPLENGDWVVAQLKTHPLR-DDRFFFAQVTQFICKA 154
WP_025328962  79 EPMLERFIAQV-KFNkDGKLQLAVDHPSINN-RIGANVNKKV-NQELKENDWVVAQLRTHPLR-DDRFFFAQVTQFICEA 154
WP_025316074  80 ESPLQRFIGKI-GFQ-ERSMVIYPENMPANL-AIRCKINKQV-QEKLKEDDWVVATLISHPLEeGKNNFLAEITHFIAEN 155
WP_039104062  80 ESSLSEFLGKI-DFK-NKAMVIIPEN-VDNI-FIKCKFNPEF-TQQLKAGDWVKAKLITHALDnDKHLFVAEALQFIAEE 154
WP_041068705  80 ESFLKRFIGKViQKK-ENNFFIIPDHPIVKQhIIPCQVATNL-QHNFKIGDWAIAEIRKHPLK-DNCGLYAELTEFIVRE 156
WP_041063309  80 EPFLKRFVGQI-KKE-NNRFFIYATYKYQKE-KIICFLNNNVqKKMLKTGDWLIAEMCGHPLN-GNDYFYAKLITFIARE 155
WP_083481460  85 EAALDTFVARV-KFV-DKRTKLQVDHPLINN-LLNARVKKDQ-GITINEGDWVMAKLLKHALS--EQHFQAEIIKHIADK 158
WP_011200641 155 EDEFAPWWVTLARHEQSRYPVQGQEVYSML-DT-ETRRDLTALHFVTIDSENTQDMDDALYIEPVTApNdeqtGWKLAVA 232
NP_240090    155 DDPLIPWWVTLARHDLDRKEPLAEDDDLIL-KEsDNRKDLTDLDFITIDNTNTKDIDDALFVSEKNN-G----DISLIVA 228
WP_011770571 155 SDPFAYRLLTVATHNLANKAPEFDHPWKII-DPqLSRSDLTKTPFFTIDGVNTQDMDDALYIEADEN-G-----WKLTVA 227
WP_012621771 155 DDNFAPWWVTLARHEQPREPVANEKSYELQ-DQ-VEREDLTHLYFTTIDSASTKDMDDALYVEPISE-NgtqtGWRLVVA 231
WP_025328962 155 NDNYAPWWVTLARHEQPREPVKGEDSYELH-DE-LDREDLTHLYFTTIDSPSTQDMDDALYIEPTDN------GWKLVVA 226
WP_025316074 156 SSIYLPWLKTLARYNLEDNSPQPDT-LTINeKElTDRQDLTDINFFTIDSEYTEDMDDAISVSKDEQ-G----NYQLKVA 229
WP_039104062 155 SSPNLLWLKTLARHNLEASAPIDDA-FSLNeAEsLLRQDLTEVDFFTIDSKETLDMDDAITITTNEN-N----QFCVSVA 228
WP_041068705 157 DDSLVPWWVTLSRYNLERHAPKAEN-VELY-NDhLIRKDLTDINFITVDNSNTEDMDDAVYVEEISD-G----KLRLNVA 229
WP_041063309 156 TNYLVPWLVTLSRYDVEYKDLNIVTEKKIL-DIsNKRIDLTHLDFITIDNSNTEDIDDALYIEEISK-E----VFCLTIA 229
WP_083481460 159 DDHFARWKATTAKHDLAWDQPDVADELQII-DQdCERKDLSEQLFFTIDGDNTKDMDDAIAISKQSD-H-----WLLQVA 231
WP_011200641 233 IADPTAYIALDSQIEKDARKRCFTNYLPGFNIPMLPRELSDELCSLMENETRAALVCRLETDMQGEIVGE-PEFILAQVQ 311
NP_240090    229 IADPTAYIKHGSKLDVIASKRIFTNYLPGFNIPMLPRNLSEDICSLNPNKRRPVLACHITVLKNGNISNK-IEFFLAWIK 307
WP_011770571 228 ISDPSAYVPENSDMDAEAKRRAFTLYLPNFNVPMLPRDLSDSLCSLKEGEKRATLCCTIHINKKGEIEGE-PAFYGAWIK 306
WP_012621771 232 IADPTAYIPEQSAIEKAARQRCFTNYLPGFNIPMLPRELSDDLCSLVPNEKRPALVGYIETDLSGNVVGE-ARFVSAWVQ 310
WP_025328962 227 IADPTAYIPENSRLEKDARQRCFTNYLPGFNIPMLPRELSDELCSLVPNEKRPALVAFIETDKAGEIVGE-TRFVSAWVK 305
WP_025316074 230 IADPTAYILQDSQLDKIAKKRSFTTYLPDFNIPMLPIELANDLCSLKENQKRPALVCDINIDANGIIDENsITFMPAFIE 309
WP_039104062 229 IADPSTYFSSDSEINQQAMQRCFTTYLPNYTVSMLPQALANDLCSLKANEKRASVVAKITISPQGEIIHSaTEFCLAWIR 308
WP_041068705 230 IADPTAYISEGSKLDKIAAQRAFTNYLPGFNIPMLPREISDNICSLHPHVPRPVLVCSVIVNRDGTISHE-IIFFTAWIT 308
WP_041063309 230 IADPTAYFSKNSEVDKTAEKRAFTYYFPGFNIPMLPYQLSENLCSLKPSLLRSALVCRVKINKIGTIINNsIEFFLAWIK 309
WP_083481460 232 IADPSAYISSGSQLEQAAKQRAFTLYLPARTVPMMPSQLANEYCSLQAEQTRPALVCQMKIAFDGLLLDG-ADFYLATVQ 310
WP_011200641 312 SKAKLAYNNVSDYLEQVe---NAWQPeNESTQQQINWLHQFALVRINWRKKHGLLFKEKPDYSFVLADNGHVREIKAEYR 388
NP_240090    308 SKSKLSYDHVSDWIEKI----GSWIPpTKSIANQILILHRLCLLRIKWRKKNAVLFKDSIEYRFHVSEHGKIIDVLIEKR 383
WP_011770571 307 SHYRLNYTDVSNYLENEelsnDCWKP-STQLAEQLRTLDSLSLKRLQWRTDNNAVFKNQPDYTLKLNNKGEISEILCEPR 385
WP_012621771 311 SKARLVYDEVSDYLEKVe---NHWTPdCAETAQQIDWLHQFTLARIDWRSKNALLFKEQGDYSFELAEDGAVKAIHIDYR 387
WP_025328962 306 SHDRLAYNDVSDFIEQLe---NSWQPeSNETRQQIEWLHQFTLARIEWRKQNALLFKESGDYSFELNEDGSVRDIHVDFR 382
WP_025316074 310 SKAKLSYNNVSDFLENN----DELLSnNATLPEQLNLLSSLAKTRTIWRQNNALVFKDSNDYRFVLDENRHVKSINKEPR 385
WP_039104062 309 SKAKLSYDEVSDFIEKD----IPFSNdFPSLHKQLTLFQQLATIRTQWRAEHALLFKENHEYDFIFNNENQLINIVKKSK 384
WP_041068705 309 SKAKLAYNNVSDWLEKS----GNWVPpNDQIASQLHLLHDLCLIRKKWRQDHALVFHDRPDYRFIINKKNEVTDIIAEPR 384
WP_041063309 310 SKEKLAYYDVSNFLEKKn--sKKEVVfHKKVIHQLKLLYSFYLIRRKWRYENTLILKSAPEYRFSMNEKGKITNIFVEYR 387
WP_083481460 311 SKHRLSYQQVSDFIEQN----NQDFAeHPDLVEALQQLNMLSQQRHQWRAEHSSVFGDQADYEFVLDNKGQVIDILRQAR 386
WP_011200641 389 RIANQIVEESMIIANICCAHYLAKNAQTGIFNTHVGFDKKFLPNAHNFLMANLSneenqqelaeRYSVENLATLAGYCRM 468
NP_240090    384 RIAHKIIEESMIVANISAANFLSKNIGFGIYNVHSGFDLVNAENAVSFLRSYNL----------NFTVKEITTLKGFCNL 453
WP_011770571 386 RSANRLVEESMIAANICAGDFLAKHKQQGVFNTHSGFSSERLGKVVSLLSEFGI----------ESDIQTLATVTGYTKI 455
WP_012621771 388 RIANQMIEEAMIIANICAAQFLDKYAHTGVFNTHSGFDSKNLEPARKFLLDTLAndenreslseRYSPERLSTLEGYCEM 467
WP_025328962 383 RIANQMIEESMILANICCAKYLEQYAGTGVFNTHLGFDSKNLEPARKFLLETLAndenretlseRYSPERLTTLEGYCEM 462
WP_025316074 386 RIASQIVEEVMIIANQALTLQLNNKIGFGIFNTHSGFDIKFIDQILKVLSNHGIe---------GFDKESLLSFDGYIKL 456
WP_039104062 385 RIAHKIVEEIMVIANQAFTEKISTQYGTAIYNTHNGFENKYLDCVVKLLDEFKIn---------GFNKEQLSSFDGYKSL 455
WP_041068705 385 RIANRMIEEAMIVANICAAKVLYENLGFGVYNVHTGFDAVKAEQVSSLLAAHGI----------IVDTNNIRTLEGFCLL 454
WP_041063309 388 RTANYIVEEAMIIANICAGKFLKDKLGFGIYNIYTGFDDAHIEEVVQILLKNGI----------QTNNYDITTVKGFCKI 457
WP_083481460 387 RSANKMVEEAMVAANICGGRFLDERLGYGVFSCHSGFKPEKLDSLVELLAKFDI----------TVEKQRLTELDYFCQL 456
WP_011200641 469 RHDIEPIEG----DYLEFRLRRFLTFAEFKSELAPHFGLGLTGYATWTSPIRKYSDMVNHRLIKACLA-NRECVKPSDET 543
NP_240090    454 RRVLNIISN----NYIDSRIRRFQSFGDFSTIPGPHFALGFSEYATWTSPIRKYSDMINHRLLKSIIK-KEKSIKPGEDI 528
WP_011770571 456 RQQTNLLHN----SYLDHRLRKLLSYADIKNTPEAHFTLGVDHYATWTSPIRKYGDLLNHRLIKSVLL-KEDNIQIDNEI 530
WP_012621771 468 RRDIEQFPE----NFLEMRLRRYLTFAEFKATSAPHLGLGISHYATWTSPIRKYGDMVNHRLIKQVLS-NQTAKPVEETV 542
WP_025328962 463 RRDIDAYSEqtqtNFLELRLRRYLTFAEFKANAAPHLGLGISHYATWTSPIRKYGDMVNHRIIKQILA-QKTPLAVEESV 541
WP_025316074 457 RRIIDN--D----EFLTARLRKCQSPADFSIQPQPHFGLGLNAYATWTSPIRKYGDMVNHRLIKNYLR-SQPLNEPDKEQ 529
WP_039104062 456 RKLIDN--N----PLLEHRLRRYLSMADFSLEPNSHYGMGFNAYATWTSPIRKYGDLVNHRLLKSLIL-KQPANPLDLSI 528
WP_041068705 455 KRKLNEQPT----RYLESLIRRFQSSTEITTKPGPHFVLGLECYATWTSPIRKYGDMINHRLLKIIIK-GEKTICPAETL 529
WP_041063309 458 YRQLNNQKN----QYLLRYIRKFQNFQEIKTKSGPHFGLGTNSYATWTSPIRKYSDLINHRLIKSVIF-NNKVECPKESI 532
WP_083481460 457 RRQITASEN----KTLDQLVKRHYNFGVYQPQGLAHFGLGEPKYATWTSPIRKYSDLLNHRLIKSVLKgETPSSPLDDEL 532
WP_011200641 544 LARLQEARKQNRMVERDIADWLYCRYLADKVESNPEFRAEVQDCMRGGLRVQLLENGASVFVPASSIHPNKD---EIQVN 620
NP_240090    529 KIKISEQRRRNRMAERDVLDWLYTIFLQKKKYQNQKFNAEITDISRSGIRARLIENGANVFIPGTLIHPIRE---ELNFN 605
WP_011770571 531 GQVLNAARKLQRLAERDVNNILYSQYLKNQVESKWRYKAEIFDIIKAGIRVKIQENGATFFIPCSLLCKDSSdatKIDCN 610
WP_012621771 543 LARLQEARKQNRMVERDIADWLYARYLEPMVEQNVEFDGEIQDVSRGGLRVKVIENGASVFVPFSTLHNNKE---EMLFS 619
WP_025328962 542 LVRLQEARKQNRLVERDIADWLYARYLEPMVEKNVEFEGEIHDVSRGGLRVRVTENGASIFVPCSTLHSNKE---EILFT 618
WP_025316074 530 LKIMNERRKLLRYAERDIAENLYIQYLSDKIGDS--FVAEIVDINRGGARLRLTDIGAFVFLPLSMIHPVRD---EVVSS 604
WP_039104062 529 LTNMNERRRAQRMAERDINQKLYCQYLTNKI--GQTYTAEIIDINRGGAKVKLLEIGAIAFLPLSLIHPVRN---EIIAQ 603
WP_041068705 530 TTKISEMRRLNRLAERDITDWLYADFLSRFAGTQKKFTAEIIDVARSGMRIRLLENGASAFIPKLFIHDIPN---ELTYS 606
WP_041063309 533 VKKIHERRRMYRVVEREIKNWLYAQYISSINNKNYIFKAEIISILRFGIRVCLIENGAIAFIPLSFIVNKND---FLFVN 609
WP_083481460 533 AEHLVDCRKRQRMAEREMANYLYCEYFAEQD-PKAELAAEVTNINRGGLNVRLVDSGASAFIPKSKLAENKE---DLTID 608
WP_011200641 621 TDELALYINGERRYKIGDIVNIRLTEVKEETRSLIGNLV 659
NP_240090    606 QESGKVFINGIMHYKISDLIQVTLSDIRLKTRSIIAKPV 644
WP_011770571 611 QALGKVIIAQQTELQLGDVIDVMLNNVKVESGQLIGKLA 649
WP_012621771 620 PEEIALYIKGEKAYQIGQAVKVKLKEVRVETRSVVGDVL 658
WP_025328962 619 PEELALYIKGAKAYQIGQTVKLRLTEVRLETRSIVGELL 657
WP_025316074 605 PEEGVIRINNDICYKLSDTLNIKIHQVKKESQSIIVKLV 643
WP_039104062 604 PDSGEIIIKQQTAYTLLDVLTVTINEIKDNNSSIIVKIL 642
WP_041068705 607 YENGTVLIKNEIIYRISDMIKVSIDEVRREDRSIIARPV 645
WP_041063309 610 NKQGILYLKKKILYKISDIIYVKIHEVKLDTNNIVVKPS 648
WP_083481460 609 SEMGSLST-PQRQYQLGDIITVTISEVKKLQQSIVASPC 646
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