Conserved Protein Domain Family
YbbC

?
COG3876: YbbC (This model is not part of the current CDD release)
Exo-beta-N-acetylmuramidase YbbC/NamZ, DUF1343 family [Cell wall/membrane/envelope biogenesis]
Statistics
?
PSSM-Id: 512644
Aligned: 593 rows
Threshold Bit Score: 253.51
Created: 24-Mar-2025
Updated: 26-Mar-2025
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
WP_013580442 1032 LKPv-----Lyepgapr---------pasgtwvPTTAPKVLTGIDVLEASNFLPLRKlatqhqnhLRIALLSNQTSQDSS 1097
WP_066421002    1 MI------------------------------------HVSYGIDTFLTNTLEKWSG--------KRIALVTNQTGITSS 36  
WP_013171164    1 ---------M----------------------------VIKTGLDNLLETNIPDLKK--------RSVGLVINHTSIDQR 35  
WP_045088184    1 --------------------------------------MIFQGIDVIENNSFNKLQN--------KKIALITNYSFVNKK 34  
WP_015869313    1 --------------------------------------MILQGIDVLEKNEFRPLRR--------RKVGLITNYSFVTKD 34  
WP_000935310    1 MLNtkikkkLflsvifflflpsvacaeksfrkhIADSKLIPSEIEFY-SNILPGLSG--------KNVILITNPSGIGRS 71  
WP_012208323    1 --------------------------------------MILQGLDLMEKDGFTKLKN--------KKVGLVINYSLVNKN 34  
WP_014731784    1 --------------------------------------MILLGIDQLQKNGLIGLKK--------KAIGLVTNFSFVDSD 34  
WP_012002455    1 ---------------------------------------MELGIDVFVKKYLSKFRG--------LQIGLVTNATGVNSD 33  
WP_053332106    1 MKT------Lllvavfftav---gveakgkakgAGKRAKVKTGLDMLMQKPDALLKD--------KRLALIVNHSAVDSK 63  
WP_013580442 1098 GHRTIDILLhADPSIELTTLFAPEHGIAAALDQ-ENLGKQTDPTTNLPVISLYGPKpadKR-PKSSDLENLDAVIIDLQD 1175
WP_066421002   37 YQSTIDVLN-REKSIQLVKLFACEHGIRGNVQAgVHIENHKDEKTSLPVYSLYSTS---KK-VSTTLLEDVDAVFFDIQD 111 
WP_013171164   36 KQLSLDILY-R-EGCQIKAVFTPEHGFRGTADAgEHVKDDYDGKTGIPIYSLYGKQ---KR-PAKHMLEGLDALVFDIQD 109 
WP_045088184   35 MDDGIDLMF-K-NQVNVVKIFTPEHGLYGLPDg-EEFDDQIHPIYKIPIISLYGKN---KK-PTAEQLKDIDVLVYDIQD 107 
WP_015869313   35 MRQGLDVLI-Q-NNINVVKIFTPEHGLYGLPDg-ETFNDTLHPKYKIPVISLYGKK---KK-PESNDLEDIDILVYDIQD 107 
WP_000935310   72 PERILREFK-K-HDVKIKHLIGLEHGFLGLEEDfSKSPVTVDEFFNLPIYHIYRVK---NA-ELPTILKGADAILFDVQD 145 
WP_012208323   35 MEDGIEIML-K-NGVDIRKIFTPEHGLYGLADg-VEYSDQIHPLYNIPIISLYGKH---KK-PTQEMLEDIDILVYDIQD 107 
WP_014731784   35 LKWGIDILF-E-NGLNVKKIFTPEHGLGGVADg-AHVSDTLHPKYGVPIVSLYGDK---RK-PVKEDLDGLDMLVYDIQD 107 
WP_012002455   34 LRRNIDLFL--ENGLKVVKLFGPEHGVFGTAPDgEKLSDFIDPKYGIPVYSLYGEK---LR-PTEDMLKGIDVLVYDIQD 107 
WP_053332106   64 GRHIIDLLH---PKFKVAKIFAPEHGVRGEVDE--HVSGEKDKKTGLPVISLYTRH---KKaPDNADLADVDLLIFDIQE 135 
WP_013580442 1176 AGVPFWTYETIVGYFVEAT-ANTHTTLIILDRPNPVGGLAVQGEISDRQ-TNVYTNYTPIPVRHGLTIGELAQYFRSllp 1253
WP_066421002  112 VGVRFYTYLATVKNLMEAC-LQTNTSLVVMDRPNPIAP-FTDGNILEDD-FTSFVGPYRLPICTGLTVGEYAQLIKV--- 185 
WP_013171164  110 LGVRFYTYIYTLAYCMEEA-AKYGLEVWVLDRPNPINGQFVEGNRVRDN-FTSFIGNYRLPVRHGMTVGELAAYFKE--- 184 
WP_045088184  108 VGLRFYTFIYTLAYSLIAA-SENYKKFIVLDRINPLGR-VVFGPRIKKE-FSTFVGNYELPLRYGLTPGELARYYKK--- 181 
WP_015869313  108 VGLRYYTFIYTLAYTLEAA-SENGIDYLVLDRINPLGR-KVYGPRIPDK-LSSFVGDYLLPTRYGLTPGELAQYFLR--- 181 
WP_000935310  146 MGMRCYTYLTVLKRIMDGIpDPTNTRLIVLDHVNPALYLKGRGEMIDKR-FLNFAGEFPSLFFGGLTLGESAVYYNS--- 221 
WP_012208323  108 VGLRFYTFIYTLANTIISA-QENSKKIIILDRINPLGR-IVFGSRIKKE-YSTFVGGYELPLRYGLTPGELAKYYKK--- 181 
WP_014731784  108 VGLRFYTYIYTLAYTMEAA-AEYGLQYMVLDRPNPLGR-GVFGSRIEND-LQTFVGGYELPLQYGLTTGELAQYFKK--- 181 
WP_012002455  108 VGLRFYTYIYTMIYCMEEC-AKYGVRFVVLDRPDPLSC-KIEGPVVKKE-FESFVGGYGLALRYGMTPGELAKYVNA--- 181 
WP_053332106  136 IGLRYYTYATTMVLAMKAA-KAAGKKMLILDRPNMAAPLGVYGPVLESKfHGGFAGYYPIPISHAMTMGELANYYNN--- 211 
WP_013580442 1254 hlpgdQSQtgihatdrgnrqtsiaqpsntqtgIHAthtpprifnettgelspanppnelpasptdNLLVIPMQNWTRAQF 1333
WP_066421002  186 -----ECF------------------------PKV------------------------------DLHISKMKNWNRSMW 206 
WP_013171164  185 -----TFK------------------------IDV------------------------------DLKVVKMIGWTREMH 205 
WP_045088184  182 -----YLK------------------------LDV------------------------------DLEVVKIEGWKGET- 201 
WP_015869313  182 -----LKK------------------------LDL------------------------------ELKVIPLEGWGGEG- 201 
WP_000935310  222 -----EYl-----------------------dKKV------------------------------RLEVVSPKNAKRSFD 243 
WP_012208323  182 -----YLD------------------------LDL------------------------------DLEIIPIEGWKGES- 201 
WP_014731784  182 -----LKR------------------------LDL------------------------------DLKISMLEGWRGEM- 201 
WP_012002455  182 -----AFR------------------------IGA------------------------------DLCVIEMEDYEPSLF 202 
WP_053332106  212 -----RFQ------------------------IGA------------------------------DIEVVKLSGYKHSLF 232 
WP_013580442 1334 FDQTGLTWIPPSPNLRSPTAATLYPGIGLTEQTNISVGRGTPTPFENLGAPWL-NPKELIAYLVARKIPGIRFTPTTMTI 1412
WP_066421002  207 GDQWNNVWIPPSPNIPHATTTLYYPISCFIEGTNLSEGRGTTKPFEWIGAPWF-KVDEVISHFTKKELAGIKIIPTYFTP 285 
WP_013171164  206 FTDTGLHWVNPSPSATGETMALCYPGTCFMEGLNVSEGRGTDYPFEQIGAPWL-DGEAVCNRIKNKSMPGVNLHPVSFTP 284 
WP_045088184  202 FDKLKLKWNIPSPALPTFESTLAYTGMCLIEGTNLSEGRGTPKPFCFVGAPWV-NENELYDFLCK-KFSDLILRKRHFIP 279 
WP_015869313  202 FNQTDLLWNVPSPALPTYEATLCYAGICFLEATNVSEGRGTPKPFQYIGAPWV-DNDELYEFLKD-MFPNLILRKREFIP 279 
WP_000935310  244 WDREGIPWTTPSPNLPTIDSAINYLGLVLLEGVNVSVGRGTTAPFVYFGAPWMtEPEKLAEELNQNSGGEYYYQTVFFKP 323 
WP_012208323  202 FENTKLKWNIPSPSLPTFDCTLAYSGTCLIEGTNVSEGRGTPKPFCFVGAPWI-DENILYKFIKE-KFPYLILRKRYFIP 279 
WP_014731784  202 HDNTSLFWNVPSPNVPTFESLLGYAGTCFFESTSVSEGRGTFKPFLVIGAPWI-DGSDLTKYLRE-EFPGLRVRSRDYMP 279 
WP_012002455  203 YDEAGLLWNTPSPNLPSLEHTILYEGFCLLEGVNVSVGRGTVHPFKYIGAPWI-DSERFYREIKKLSPAGVVFRERVFLP 281 
WP_053332106  233 YDETGLPWRNPSPSITGMQSVLGYHLAGSLEALNISVGRGTTNPFQFFGAPFF-DMKKIVTALNQAKLPGVKFYPAKFKP 311 
WP_013580442 1413 AEDanKypSHGQTIPAIHFEVTDRTILDTPELGLELLSALHHLYPTQFnLA------------RAKTLLASAQTLADLTA 1480
WP_066421002  286 TMS--K--HHGEFCSGIQLVITERTEIHIAKTAYELLQTIFAVHKE-AdWlppfk---kgmppFIDYLWGTDKVRKGIDD 357 
WP_013171164  285 INA--D--YMQIACGGIFLEVTDRYQFSALETSLALVDVIHEMYPGNLkVKdpik-----grfFFDLLFGTDEARKKMNH 355 
WP_045088184  280 NFS--K--FQGQLCNGIEFFSETKDNFV--IVAIEMIRYLAQ--KEDFeFRkyldrenhlqrdHIENLLGVEK-KVFFEN 350 
WP_015869313  280 RFG--K--YAQQLCFGVEFFPKFEDNFF--EVSISLLHYLSK-YPE-Mki-----------dkHISRLMG-DELALEIAT 339 
WP_000935310  324 VFG--P--YKNEICRGLRLTVVNRK-YDPLKMAFQLISALKSNYKE-FkWRsypd-----gtyNIDFLWGTESFRKTIDA 392 
WP_012208323  280 NSS--K--YQGELCKGIEFFPEIKDNFT--IVAIEIIRHLIQQ-KEEFeFRkyidkgsqtqrdHIENLLGEDK-KIFFEN 351 
WP_014731784  280 FYR--K--YANANCSGVEFFPRIEDNYF--VITLKMMEYLLKYE--QFdi-----------mdRSDDLIGIKESALKIRT 340 
WP_012002455  282 AAF--K--LQNKPCYGLEFFVTDRREIKPLHLAVDVISTLRRIHPYDFrWDsyfhg--dneryHFDLLIGDDFYRKAIED 355 
WP_053332106  312 KRS--A--YSKETCRGFKLVVTNRRKVDPMRTMVTIAGILYNNLPEKNreKnw---------aRIGNGIGDMAFIDAIAK 378 
WP_013580442 1481 GKDPRDITAAFQPALSQFRTATAPYLLYQ 1509
WP_066421002  358 GKSYCELTIDWSKGIEEWKSRIQTILLYS 386 
WP_013171164  356 SESLLEWMRE-NDESSAFKLERKPFLMY- 382 
WP_045088184  351 DLS---YLEDWNNSAQEFINFCDDILLYG 376 
WP_015869313  340 GKT---DVNVWRKSAEEFIDTVSDLLIYG 365 
WP_000935310  393 GKKYDQYAEYLSSIEKEYNEKIKKYYLY- 420 
WP_012208323  352 NDT---YLNELYKSSQDFIDFCEDILLYG 377 
WP_014731784  341 HNL---DYREWNESGMEFIDFVDDCLLYP 366 
WP_012002455  356 GALSKDFEQIWESESEQFENIIGKFRIY- 383 
WP_053332106  379 GEKPEILVQKTQADVKAFEEERKKFLLYP 407 
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap