Conserved Protein Domain Family
VirD2

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COG3843: VirD2 (This model is not part of the current CDD release)
Type IV secretion/DNA transfer system DNA endonuclease (relaxase) VirD2 [Intracellular trafficking, secretion, and vesicular transport]
Type IV secretion/DNA transfer system DNA endonuclease (relaxase) VirD2; is part of the Pathway/BioSystem: Type IV secretion system
Statistics
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PSSM-Id: 512639
Aligned: 168 rows
Threshold Bit Score: 427.846
Created: 24-Mar-2025
Updated: 26-Mar-2025
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011456642  19 APRAERVVRPARGFLADVHRAIRRAGGDPNKLAGRGKASGRYNARGRGAKVVAELKGRNQWSRSAngTRTRARRVTVKAR 98 
WP_075995194   1 -MASDEFHPKLGRIRAKPGAKNQRYLNKVIKTMRQASQRPGSKSRSSFTGSRIGRGYSAGTVLTSqiRQPGRRRVIVKAR 79 
WP_015826529   1 MSSEKPFTPRLGHIKDGGQAGSKRFSKQIAKRAAKLAQTSGPKGRVRASFVRGATASAVSSVRHTsyPFSRMRRAVVKVH 80 
WP_176869186   7 DDDFTIRPGRIRSRGDAVGKRYLNRVRAAVRKTTKSIGGGRKGTGFSGTRIGRGAGVGHVSAARNpfSGNRGRRVIVKVN 86 
WP_160589037   1 -------------------------------------------------margsgagrasqfrqtphPKFRMRRVVVKLH 31 
WP_135997618   1 MVDDTDFTPRLGKLRDVGAGSSKRFRARVLKVAKGLHRKPTRPGFTGARIGRGSAAGIHALSRAGhiERFRMRRVVVKVH 80 
WP_012505223   1 --------------msqddklplfrtkiggrarkeqsripgsvlrkvtsparggyvkrgsrpahvkpSSGFSRKVIVKVR 66 
WP_013300173   1 MSGEDEFTPRLGRPRDVGAAGGRRFKSQLTRAAKRLSSSTGKTVFSGAQIARGSGAGRASQFRQSpyPKFRMRRVVVKVH 80 
WP_013301516   1 --MSDDFDFVPRLGKIRSKGKAKTQLKRLKRVVAKGRLGSRGRKGLPPGAVRHAGRGKVQAALARhwSSQQARRVIVKVH 78 
WP_013041101   4 DEDFAPRLGRQGASRGPKARRYASSVVAAANLARGAGPGRKGRAGFSGHRYGRGAGIGRLLSVGTsnAFFRRRRVIVKAR 83 
WP_011456642  99 IVKLNPqrgaaR-GrsfvsAKAVDAHLRYLQRDGVTLDGEKGQVYARDDDIADGRDFLDRGRGDRHQFRFIVSAEEGVEL 177
WP_075995194  80 FTSFKR-----G-G-----LGAARAHLRYIQRDGVTLEGEKGQLYGHDADQMDGKTFLDRSKRDPHQFRIIVAAEDGSEF 148
WP_015826529  81 IARAGYv----G-G-----AKAFGEHISYIERDGVDRDGNKGQSYDRDHDQIYTKDFKERSAEDKRQFRLIVSAEDATQI 150
WP_176869186  87 IARAKT-----G-G-----VGALRAHVTYIQRDGVERDGSQGALYDRADDEVDGKAFVERSGGDRHQFRLIVSPEDADEL 155
WP_160589037  32 IARAGQ-----GlG-----QAAFRAHLRYIQRDGVDRDGEGGELYGRDANRMDGSLFEERSAADRHQFRFIVSPEDASEL 101
WP_135997618  81 IARART-----GiG-----VAAYGRHLDYIQRDGVDREGRGGELYGREGERVDGRDFADRSQDDRHQFRIIVSPEDAGEM 150
WP_012505223  67 VVKMNA-----Y-G-----KKAAQLHVRYLQRDHVGKDGEEGKFYSRN-EALKNPEFDPGAHGEAHQFRFIISPADAHEL 134
WP_013300173  81 IARATR-----GlG-----PAAFRAHLRYIQRDGVDRDGEGGELYGRDADRIDGSLFEQRSATDRHQSRFIVSPEDASEL 150
WP_013301516  79 IARASP-----T-G-----VAGFAKHVAYIRRDGAGREGERGKLYDRSVDEADAKAFNNRADEDRRQFRLIVSPEDADQM 147
WP_013041101  84 LVRLGG-----K-G-----GNQAVDHLRYLQRDGTNRAGERSALYGPGEDHADGKAFLEKGNGDRHQFRFIVAPEDGDRY 152
WP_011456642 178 DNLRQTTRDLMVQMEVDLQTTLDWIAVNHYNTGHPHSHIIVRGVTDDGKILNIAGDYIAHGIRERASELVTLELGRQTDL 257
WP_075995194 149 RDLKPFVRSLMTQAEKDLGTKLDWVAVDHFNTGHPHTHIVIRGSDEKGGDLVIARDYISQGLRERARDLATLELGLESAN 228
WP_015826529 151 PDLKVEIRGFMSGMEKDLKTKLDWIAVDHFDTGQPHSHVIIRGVDELGDPLAIDRRYLMTGMRTRLSSQLTDSLGLRRDI 230
WP_176869186 156 GDLKAYTRELMTRAECDLGTKLDWVAADHFDTDNPHTHIVIRGAEPSGKDLVIAKDYITHGFRRRGSEIATEELGPCPDK 235
WP_160589037 102 GDMKETVRALMAQAEKDLGTRLDWVAVDHHNTGHPHTHIVVRGKDQMGRDLVIARDYLTEGLRERASAIVSDELGPRRDL 181
WP_135997618 151 GDLKETTRRLMNEMERDLGTRLDWVAVDHHNTGHPHTHIVIRGKDAMGQDLVIARDYLMKGLRARAEERLTQELGPRRDV 230
WP_012505223 135 -ELTEFTKELMEQVEKDLGRELHWKAVNHYNTDNPHVHVIVRGVDRQGKELRIDPDYISNGLRYRAQEIVTRELGPQSQR 213
WP_013300173 151 GDMKETVRALMAQAEKDLGTRLDWVAVDHHNTGHPHTHIVVRGKDQLGRDLIIARDYLTKGIRERASAIVTDELGPRRDL 230
WP_013301516 148 KDLTRFTREFISQVEKDLGRRLDWVAANHHDTGQPHVHIVIRGGNTRNGELLIDRKYITRGFRARAQELVTRELGQRRLR 227
WP_013041101 153 EDLKPLVRRLMMQMEEDLGTRLEWVAVDHYNTGHPHSHILLRGVDQDGDNLVIARDYIGRGLRERAAELVELDLGPRSDR 232
WP_011456642 258 QVTDQLRREVHAERFTRLDKMLMAEQRInsAFADLRPDKdMlETMKRNRALLIGRAQYLEKLGLALKIDPGVWHLRENAE 337
WP_075995194 229 SIQKKLALEVDADRFTRLDRSILRDSEE--GILAITSKT---SQDKRQHSLRMGRLRKLESMGLADELKPGVWKLAERTE 303
WP_015826529 231 EILRSQTKDINSDRLTRLDRDLDNLASD--QDVLPTKAI-S-EGERFKQSFLRKRLTHLQNLGLAHQ-QKDKWTFKIGWQ 305
WP_176869186 236 DIALMRRREVDKERFASLDRELTELADD--GVVTIVEGR-G-SFSRFRRALFIGRLQKLERLGLARGEAAHSWRLSEQLE 311
WP_160589037 182 EIARAQERDVTAGRLTRLDRKIERLARN--GDMTRPEAF-K-KLSRFERALIQRRLKHLRGLGLASARGDGAFALEEGWK 257
WP_135997618 231 EIAKARQREVTMDRFTGLDRELASLAVN--DRVELPPAS-G-AQARFTRSLQRQRLAHLEGLHLAAPSGTDVWQLKPNWQ 306
WP_012505223 214 EIDEALAREIGKERFTSLDARLAKLEEN--RQIDLGAYPeT-GGQRIAHGRLTSRLQVLERLGLAEHEGGREWRMKPDWQ 290
WP_013300173 231 EIARAQERDVTAGRMTRLDAKLEQLARD--GDLTRPGGM-S-KLSRFDRTLIQRRLEHLRGMGLASARGDGAWALEEGWK 306
WP_013301516 228 EMAAARSNEAEREALTAIDHDIAARLSD--GRYTPESER-G-GLSRFDGALVNRRLRFLRTLDLARRREDGRWTLKEGWQ 303
WP_013041101 233 EILVSRRAEITQDRFTSIDRSLLRIADG--HVVKP-----V-ALDPLEHDLQASRLGRLVRMGLAEPLPTGRYRLDPDLE 304
WP_011456642 338 PALRAMGERGDILKSIYRALEANdlEVQRGEAQLSIHR--ETLQNRVVGRVPAKALStDESRDRMQLVIDGTDGQVHQIE 415
WP_075995194 304 TTLRQLGERGDIIKTMQRVFKEV--GIDRGAADYSVFDa-SKPGLKITGKIVAMGLS-NELQDQHYVVVDGTDGKLHYAE 379
WP_015826529 306 DTLKQMGRRGDLIRSINDKYKNL--DISN---KFKIYDraKPPSHGLVGRVLGSIPL-DELKDTHALLIEGIDGQTWSVD 379
WP_176869186 312 PALRRLGTRGDIIRTMARAIGNS-------RHDFAIFDpaDAAQKPVIGRVAASGGS-DELRNARYLIVDGVDGRTWHID 383
WP_160589037 258 DRLQAIGRDGDRIREIAAAFNTG------DGLSGRVYDpgHEHTRAVVGRVVTDGPE-DEPRNRRYLILEALDGERWHVS 330
WP_135997618 307 RALTAMGRRGDIIRALAAGVEHGp-----HLTKVHFFDerLDDAPPLRGTVIQNGPE-DELTDKRFLLLQDFEGTPWYVP 380
WP_012505223 291 QSLKAMGERSQIYQEIHQEVGGD-------PARYRIFDs-KAHGEGIEGRLAAKGLA-DELGDRYYCIVETPKGNSFYVQ 361
WP_013300173 307 ERLQTIGREGDRIREIAAAFKTG------DGLSGRVYDptHENVPAIVGRVVTDGPE-EELRNRRYLILEALDGERWHVG 379
WP_013301516 304 ETLRALGRRGDIVRSLAN-LEGR--KIDASRLHALPRD--LNSGGEVLGQLAATLPG-DELRNGTTALIEGLDGRVWSIE 377
WP_013041101 305 TVLRAMGERGDIIRTMQREFSRL--LLERSSADRLIYDpaEAGTPPLIGRILMHGLA-GELEDRHFLLIDGIDGRSHYVP 381
WP_011456642 416 LRADRCEDVGRGMIVSAAPPSTEPRVADQNILATRASDGTYSPSRHIEIARERKLSPEPERYVASHVRRLEALRRSGIVE 495
WP_075995194 380 IGRLSRFDPPGKNMVVSLRGNLTPDHSQQHSNRQARLFIESHVPFRDLATAEGATWLDRKLLSRQPETFREKGFGAEVNQ 459
WP_015826529 380 IGSTSKDKLPTKGHTVSVSHQDGKTKSSDQTIARIASLNNGLWSDSIHAVNDPASSPQYRQALKRRLEALRRHKIVSRNK 459
WP_176869186 384 IGVREPGTLPADGAIVEIGARRSEPKPADRTISKIATKHKGVYSDALHASHDPTATAGFRLAHKRRLEALRRAGIVSRQS 463
WP_160589037 331 LGETLPGAVPPKDAVVEISPAAGAARASDRTIARIAALNGGMYSEASHEAFDPASRPDYRLAHIRRLEAMRRAGLVTRDP 410
WP_135997618 381 AGDDPVPPRGAVVEVSRKQGSPSRSDRVITQIAERNGGFYSDALHAEADPSASSAYRLAHKRRLEALRRAGIVTRGMDGV 460
WP_012505223 362 LDKGVNPEAFRKGEIVSIRSEHESWLKPTDRIIAEEAGKNGGKYDRHRHLKELEEQQVVSGKARIDKESLVDAIEKRLQR 441
WP_013300173 380 LGETLPGAVPPKDAVVEISPAARSPRASDKTIARIAALNGGLYSDSLHKAFDPASRADYRLAHIRRLEALRRAGFVTRDS 459
WP_013301516 378 MTEQEAAQLPKPGGIVSVGRKAVEPKPADITIAAIAERNGGVYSDELHEATDPSSSPAFRLAHKRRLEALRRLGVVDRNV 457
WP_013041101 382 VGKGDTGDLLPPSQAEGDSSQPGGAVVAIRPREAVVREVDRTIAAIAAGNGGRYDREAHRLHDPGARSDYVEAHVRRLEA 461
WP_011456642 496 RWDENHWSVPEDLPKQGLAYDRKRHGSGPRMTVLSPISLERQVTHDGATWLDRELAEQRQGSLRMAGFGAEADQAMNRRK 575
WP_075995194 460 ALRQRQRWLVQEGLMTEQDGRLIARRRMLDELTKREVSKAASSLAKTIGMEHVVASELGRSSANVSSSVKLASGRFAVLQ 539
WP_015826529 460 DGSWKVGQDYLAKVQAYETASLEALKIETKSHFKVDKLVQVQALTWIDEIDPRQCANTGFGGQAKQAILARRLWLKEQGL 539
WP_176869186 464 DGTWHVPDDYLTRATAYEARRKQCSQMRVLSWMPLEQLAEREAATWLDTDATNLKTVSRGFGKELDKACKHRRAWLIRRG 543
WP_160589037 411 DGRFAIGADYLAKAASFETARTGGVRLEVKSWLSVEAQIERHAPVWLDGVDHGSLTGKGFGQETASALSARRAFLEREGW 490
WP_135997618 461 WQIGERYLEQAAEYEAARGGGIRVRVRSWMAMEAQIEARAETWLDQVSPTEIGEGEKRLHEARLLRLGFLRREGLLVDEQ 540
WP_012505223 442 LRRFRLVEMLEDGTWRVDPSLIEKLQQKDRQHPVSRLSMKRESGLSLQEQEVYRGRTWLDRFTAQGQVDDAARYGFGKEL 521
WP_013300173 460 DGRFAIGADYLAKAARFETARTGGVRVEVKSWLSVEAQITRRAPVWMDDVDRESLTGKGFGQDTASALSARRAFLEREGW 539
WP_013301516 458 HGTWAVPSNFEERALQAEATKHGLAIDVRSWLPVEALAERHAETWLDQIDTDVLDGATGPFADELRKLLSIRKVWLRTEG 537
WP_013041101 462 LARAGDIPGRSGDGSWVIAPDHFGRVAAFERRQLRIQPVMIEMLSPVGVADLATAHAATWLDRTLLDGDPPQLRNAGFGR 541
WP_011456642 576 RVLVERGDAIDLGNGRIRTPKDLIRRLEGREVERVGRA 613
WP_075995194 540 KGEQFALVPWQQAVRMRKGMGLGILNGKGISR------ 571
WP_015826529 540 MQAEQNSLSHQARTNLKAKEISSLANMETLNSARTFVS 577
WP_176869186 544 LVSANEPTDRKALSRLRDTEVRERGRKLEQTLAKRFTA 581
WP_160589037 491 LGEDGQLKPGMRDRLAAEELKSAANGIEGKGAFLKLED 528
WP_135997618 541 DRLSEEVRRRMRLEELRRAAAGETNQSGRKYAALETGE 578
WP_012505223 522 NGSIQRRVELLREMSIDPMDPARAKALDQIEKRDLARC 559
WP_013300173 540 LGEDGRLKPGMRDQLAAEELKSAADRIEGKGAFLKLED 577
WP_013301516 538 YTLDQTGQPTAEDAERLKRTEFEKAMKTEGARMELSFA 575
WP_013041101 542 DMADALARRRQWLVEEGLAEQGEGEIRYRRDLLAVLRR 579
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