Conserved Protein Domain Family
VirB6

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COG3704: VirB6 (This model is not part of the current CDD release)
Type IV secretion/DNA transfer system core protein VirB6, VirB6//TrbL family [Intracellular trafficking, secretion, and vesicular transport]
Type IV secretion/DNA transfer system core protein VirB6, VirB6//TrbL family; is part of the Pathway/BioSystem: Type IV secretion system
Statistics
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PSSM-Id: 512629
Aligned: 184 rows
Threshold Bit Score: 75.1782
Created: 24-Mar-2025
Updated: 26-Mar-2025
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012461383  659 KMFYADSIT-----------------------HDQVSSASILKpLSSF--------------------------QRGMTL 689 
WP_121616751   24 SGIFKGVWEsiigpfddlhglktlvfnqyddgERVFGTFTESEiTNAIap-----------------------gVQSMSY 80  
QCT39493      161 TTFLAKGMDm---------------------lYNIISGFMA---VTTVtn----------------------dtSSSLYK 194 
WP_260763468  256 MAFTAKIADgl--------------------yYNFLQPLLR---YDSLsnp---------------------tnRAQLQK 291 
WP_012461385  487 rfvkknneqfnlkvtvppdsegkikvagffydniyipiklkvekFSKLfyfg-------------------lakNAALKK 547 
WP_316354060  251 DIVYKKVITp---------------------lRKEFNKLTKQF-YSKLv------------------------tNATLQR 284 
WP_010886213  479 DIVYNGAIKp---------------------iTDQFRTFSKNF-YIKLi------------------------kNSAVQN 512 
AKM78616       11 IGLVSAIFEialtqfty--------aqvagyiDSLGTSVITKA-SQAIlviftwvaqkffmlggsfielgmnlnNTILDP 81  
WP_041571790    4 gegIIGAYHy---------------------lSEIMGAFQENV-VNNMle-----------------------aAQAIYN 38  
WP_106874635  534 vsgsaytkvqanngsqalsdglnkyvvqpiisqfaimmrliydgpTGLi------------------------nNSVLIK 589 
WP_012461383  690 ---------------TVKAALMLYIIFFGIKMIFVKRFFSLERLVTG------VLQILI-VMYFSVGlgpMTNkdgkisy 747 
WP_121616751   81 ---------------IVGFFLVLGIIFMGVKISNTGLNPANRTMFIE------FIRDWV-IIVLALT------------- 125 
QCT39493      195 lwsiv------rdiaNICFVIAFLVIVYSQITSVGISNYGIKNMLPRliiaaiLVNVSYwICALAVD---ASNi------ 259 
WP_260763468  292 swsrf------lllaNVMFVIVFLFIIWSQVTGQGISNYGIKKLLPRmivaavLVNTSFwICMLAVD---ISNi------ 356 
WP_012461385  548 ---------------VFSILAILYITLYGIYFLLGVVKVTAYDLLIR------CSKIIV-IAALFNEs-sQHI------- 597 
WP_316354060  285 ---------------IARLMLILYILLYGLFFLAGATKITVTDIVMR------VIKISI-IVILFGEn-sWNF------- 334 
WP_010886213  513 ---------------IVKAALTLYVIIFGLMFVAGALKLTAIEVITR------ICKIAI-VAFLIREe-sWNF------- 562 
AKM78616       82 aknvflfkgwtvfvnVADLALVIALIVIAFATMLNFESYGMKKALVP------LIVISL-LVNFSLVi--PGVli----- 147 
WP_041571790   39 n-------------sWFEASFLVIIIIYAFQVMQGGF---TREGVLR------LINILL-MAILVKAi------------ 83  
WP_106874635  590 ---------------IVKTAAVLYVIIFAIYFLFGQVKITVEELVSR------IVKITLtVNILFSSq-sWTF------- 640 
WP_012461383  748 nngMQDHFLPFLSS---VTSELA-HMV---FSSVG-SdsavggtklcyfdpnkdytpdaryyAL-WDAIDCRIgyylgfr 818 
WP_121616751  126 ---NIGFLYEMIFM---FNEAIV-GII---NGEII------------------------------NNLEDKLM------- 158 
QCT39493      260 ---LGSSIHNLFTA---IMDKIN-------TGSQY-N-------------------------NVtVPSWEIIT------- 293 
WP_260763468  357 ---AGYSMKELFEG---MQQPQG-------------N----------------------------NSTFETVT------- 382 
WP_012461385  598 ---FYDTLFPMFDG---GINSLI-SYA---VKTTA-Sdv----------------------dNP-FKFFDLVV------- 636 
WP_316354060  335 ---FNDNLFNMFVY---GSDYLM-ANV---VDISS-Sa-----------------------gNI-FGFIDPIF------- 372 
WP_010886213  563 ---FNTYFFSVFTD---GINFFI-TNV---VGATS-Sr-----------------------sNI-FGFIDPIF------- 600 
AKM78616      148 --dFSGMVTEFFVQ----QSGLS-------GGNIT-S-------------------------AL-ASGFDi--------- 178 
WP_041571790   84 --iWNRELFFLFLGvmqLPADIFaSAVsfvVGGELeS-------------------------EP-HIILDQLQ------- 128 
WP_106874635  641 ---FNTYLFDSVLR---GTNYFI-LVF---TGQDA-As-----------------------mTP-FTFLDPIF------- 678 
WP_012461383  819 llhnytvdrskpslgGKLVGssigtsandditkhlsnikdghalkkdDTFLVFPTLwGLLl------SGEIIF----FLV 888 
WP_121616751  159 ---------------PDIEDs--------------------------------------------------------GLV 167 
QCT39493      294 ---------------AAVLSgg------------------------aLTAGI-----GIai-----aAHTFTG----AIF 320 
WP_260763468  383 ---------------SRVLAgtlv--------------------igaASTAVia------------vGGSVIGgsmfALL 415 
WP_012461385  637 ---------------SRYIDv-----------------------------NFL----KIIlieivniHNGLTIl---GIL 665 
WP_316354060  373 ---------------DKYTDg-----------------------------RIW----GLLliqllqiHNGLTFf---AIM 401 
WP_010886213  601 ---------------DKYTNg-----------------------------RIW----GLLfiellqiHNGLAFi---AII 629 
AKM78616      179 ---------------SGFLStksg--------------------atsIAGAM-DKF-----------GSGILSiigsMVF 211 
WP_041571790  129 ---------------TVLGD---------------------------VGGVILDNV-GWT-------VSNVFS----AIF 154 
WP_106874635  679 ---------------NTYTSp-----------------------------AFW----GAIfvqfvqiWNGLSFm---AII 707 
WP_012461383  889 M--LLFVIIFLTLFWRFMAVFITSLVNLYVMCYISPIFIPMVLFEKTKSMFNNWLHLTLSFALQPAIVAAFIALFVTLMD 966 
WP_121616751  168 Gw-IIIGLFMLGLNVWANFYYMMREITLMVLMILGPVFLALYLFPTTKPATLAWLKELIGTVMIQSVHAVTLFVIAIIND 246 
QCT39493      321 Ll-IPFLVGVILAALVALIILAARQALITCLVIISPLAMVAYLLPNTEKLFEKWRSAMMTLLLLFPIFSVIFSGAQLAGL 399 
WP_260763468  416 GflAPVIISAIVAVATVVIILIARQAFITILIVLSPIIFVMFLLPNTKKWFDRWMGLFVKLLVMFPVISLLFGASKLASN 495 
WP_012461385  666 T--LWSIMKFVTIMVKVCMELLMSMIAIAILVGLAPMFIVFILFDRTAEIFKRWLSALLLNTLMPVIMIIFILIINELML 743 
WP_316354060  402 T--IYSILLYFRAVLEVIINYCLAFVGLAVMISLAPFFITFVLFEQTKSLFNNWMSTLFSYMIQPTILLIFFLLIDQIIS 479 
WP_010886213  630 T--IYSLITYFRAILEVIIGYVIAFIGITVMISLAPFFIILMLFEKTKSLFDNWISTLLSYVVQPTILLIFFLLIDQVLS 707 
AKM78616      212 I--IIFTLIASVIMMTIAAMLFIRYFTLTFLLVLTPIVFVSRIFPSTRSHWDKWWNDFVRWTMFPPVMIFFMWLSLTsln 289 
WP_041571790  155 Am-IIFWLVSLALVLVIIFMLLVSKMISIVALGLAPILLPFLLFKATRGMFFGWMKFYISYSLYGPFTIFFGYLLAEIST 233 
WP_106874635  708 T--VMGIGVFLTAVFEVVMTYVLAFITMYILIGIAPIFIPLMLFGATSEFFYRWIQTLVKSMLVPVVFIVLILTFDIFIH 785 
WP_012461383  967 SITYKTC 973 
WP_121616751  247 SGESGli 253 
QCT39493      400 AIIQNag 406 
WP_260763468  496 VLLSAsp 502 
WP_012461385  744 VAVEAAF 750 
WP_316354060  480 TQLASAv 486 
WP_010886213  708 EQLLKVv 714 
AKM78616      290 afdnpap 296 
WP_041571790  234 LAIQTKA 240 
WP_106874635  786 QVLRSTv 792 
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