Conserved Protein Domain Family
YjdF

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COG3647: YjdF (This model is not part of the current CDD release)
Uncharacterized riboswitch-regulated membrane protein YjdF [General function prediction only]
Statistics
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PSSM-Id: 512624
Aligned: 249 rows
Threshold Bit Score: 178.851
Created: 24-Mar-2025
Updated: 26-Mar-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_069962509   1 MD---------------------RRLAWFVGLLLPVLLWSAVGPHDRFTWFLEVVPVLIGMPLALVVRRRFPLSSLLLGL 59 
WP_012634801   1 MSkfmkkislldtsknqvpfsknRALHTMMAAYAIVFIILSIKPVNTFEWWYESIVPLTVIILLGLFYSKNRLTNTAYLC 80 
WP_062542675   1 MTftfatdke------hthfrqsPLLIAYVVIFGLFWTYTGFTSSDPKNWWLENTLTFTAIIFLVAFYKHFRFSDFSYTC 74 
WP_157480656   1 MPftiaispt------rtplrsnYWLWAFMVIFFAIWVSTLLGTTDMSNWLLENTLTFLFVGFLLLSYRRYQFSDTSYLL 74 
WP_160690718   1 MPysfaldpe------rthfrknLLLIVYVLVFLGYWAYTGFNTPDLKNWWLENTLTFSAIILLAAFYRHFQFSDFSYTC 74 
WP_162447280   1 MTsatspyr--------ikigynAFLVILCLVFACIWIWSLMHTSDAGNWLMENSTVVLFIGVLIFTYPYFKFSDLSYLL 72 
WP_182801000   1 MAftiaisns------rtpltknYWLWLFVSVFTAVWVNTYLGTTDMSNWMLENTLTFLFLIFLIVTFKRFQFSDLTYLL 74 
WP_182414739   1 MSlvkarnsh------killfrnPVLTGSILVFIVFWLYSGFATTDFLNWILENMLTLPGIIAFGFFYSRYSLSDKSIIF 74 
WP_194447016   1 MIrlsm-------------atmpRVLRVLCILLPLVLAITGFLSHILSDWWLENLAVFLVLLALALAYKRLPLSNTSWIL 67 
WP_046309208   1 MSatltpt---------lrykqqPLHIILTLLFLAFWIYTGITTVDLKNWILENTLTMSLIIFLVAFYNIFRFSDTSYVL 71 
WP_069962509  60 LWVHSVILIVGGHYTYARVPLGEWAMEWFGWTRNNYDKLGHFAQGFVPAILVREILVRLSPLGGcavagvadpgpasarp 139
WP_012634801  81 ILTVLVLHAVGAHYTYTACPIGMWMSRIFGFNRNHFDSIVNFFFGLLISIPVLESIYYRIRIRY---------------- 144
WP_062542675  75 IFLYLMLHVYGSQHNYALNPFGFWVQEQLDLERNHYDRLVHFGFGFFLAYPMHEVFKRVTPMRP---------------- 138
WP_157480656  75 IAVYLCLHVYGSKYTYAENPLGYWLQDVFDTSRNHYDRIVHFSFGFLLAYPMREMFLKWVGYPK---------------- 138
WP_160690718  75 MFLFLMLHVYGSQYTYSENPFGYWVKDELGLARNHYDRLVHFGFGFLLAYPMYEVFRHLTKMRP---------------- 138
WP_162447280  73 FFIFFLLHLYGSQYTYPHNPLGEWLQGLTGSARNPYDRIVHFCFGLLLAYPMRELCLNYIKTSS---------------- 136
WP_182801000  75 ICIYMCLHVYGSKYTYAENPLGYYLQDVFDAKRNNYDRIVHFSFGFLLAYPMREMFLKWLKYPK---------------- 138
WP_182414739  75 VFLFLLLHLYGSQYTYQENPVGRWLQEAFSLQRNHYDRFVHFSFGLLMALPIYEICRYHLKSAK---------------- 138
WP_194447016  68 LFLFLCFHEYGALYSYSNAPLGEWMMPWFHTQRNHYDRLVHLLFGLMLTWPALEAIGFLTRSRG---------------- 131
WP_046309208  72 LFLFLLLHVYGSQYQYADNPFGEWLKGQYNFSRNHYDRLVHLGYGLLLTFPIYEVLAYGFKVRR---------------- 135
WP_069962509 140 atvrsGWLGFLVVSVCLAFSAFYELLEWWVAAAS---GAAAEDFLGTQGYVWDTQSDMAWALGGAIVAVGLLGRL---HD 213
WP_012634801 145 -----IGACMLSVVIILAASAFYELFQMFSTMILs--DGRMEIFLGIQGDLWDSQKDMAFVVLGAFMSMSTCIIFrinKN 217
WP_062542675 139 -----FFTYALPVELTVSMGAFYELMEWAVADIFf--PARGMAFLGTQGDIWDAQKDIAVALLGALITMSAVGFT---RR 208
WP_157480656 139 -----GVSWVLPIEITLSVSAFYELIEWAVADIFf--TAQGDAYLGTQGDVWDAQKDIFLAFSGAILATTIVSII---KR 208
WP_160690718 139 -----LFAFLLPIELTISMGAFYELIEWAVADVFf--PAQGMAYLGTQGDVWDAQKDIAIAMLGAAITMGSVFLG---SR 208
WP_162447280 137 -----TLAWILPVVFSLSFGALYEVIEWLLASLVs--PQKSADFLGMQNDQWDAQKDMALAFVGSFCGVSLISIS---KK 206
WP_182801000 139 -----LVSWILPIEITLSISAFYELIEWAVADIFf--KAQGDAYLGTQGDIWDAQKDIFLAFSGAILATTIVSAV---KR 208
WP_182414739 139 -----WLPYLIPLELTLSMSVFFELIEWVFATLFv--QEKASVYLGMQGDIWDAQKDVAVAFLGAVLAVLGIWLS---TQ 208
WP_194447016 132 -----AILYALGVQFILAASALYEITEWLVASAVd--PVLGVEFIGAQGDAWDAAEDMAAALIGALVVVCVAGTV---RA 201
WP_046309208 136 -----WVSYLLPLDLILSSSMVYELVEWMVADWVyggGDQGMDFLGMQGDIWDAQKDVGMAFSGSLVAMALTFIF---AP 207
WP_069962509 214 RSMA-----N-LLR 221
WP_012634801 218 HKIHm---vRyrkn 228
WP_062542675 209 KE-K-----Rl--- 213
WP_157480656 209 VF-------KvYEQ 215
WP_160690718 209 FS-T-----K---- 212
WP_162447280 207 LIgprsaitR---- 216
WP_182801000 209 IF-------NiYEK 215
WP_182414739 209 KGDQ---------- 212
WP_194447016 202 WRNR-----Raqaq 210
WP_046309208 208 RK-------RkGNN 214
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