Conserved Protein Domain Family
VirD4

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COG3505: VirD4 (This model is not part of the current CDD release)
Type IV secretion/DNA transfer system ATPase VirD4/TraG/TraD [Intracellular trafficking, secretion, and vesicular transport]
Type IV secretion/DNA transfer system ATPase VirD4/TraG/TraD; is part of the Pathway/BioSystem: Type IV secretion system
Statistics
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PSSM-Id: 512602
Aligned: 777 rows
Threshold Bit Score: 103.931
Created: 24-Mar-2025
Updated: 26-Mar-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_014924702  400 Rpag------------------------------------------------------vyfI-D---EAPVNTMVLAMTR 421 
WP_012486877    1 --------------------mkdfyedyrfgsadwatwheayecglfdnpgpvlgymdgklLmL---DGDAPMITIGGAG 57  
WP_165326939    1 ---------------------msdfgdarfgsarwaedeeiaraglfgktgfpigysgnrlMrL---DSDSPGLIVAGAG 56  
WP_046478093    1 ------------------mhsssfnehyrfgsagwadenqmraaglfserglpigymgrrkLrL---DGDAPLITFGGAG 59  
WP_165326438    1 ---------------------msdfgderfgsarwaedeeiaraglfgktgfpigysgnrlMrL---DSDSPGLIVAGAG 56  
WP_233421784   60 Spskkkqsvspmvaakmkaegqwakae---------dlearklldpkpsivlgrwgaekrlIgA---SGLRRVITFASKP 127 
WP_064334299  154 GkralhgeadwmtlteadklfpgtggivvgeryrvdrdsvagvsfradtsetwgtggksplLcFdgsFGSSHGIVFAGSG 233 
WP_041699188  153 GtravhgandwmslshaaklfppiggivvgenyrpdqdsigqvgfdprrketwgkggkaplLgFdagFGSTHGLVFAGSG 232 
WP_194215259    1 -----------------mtdfdnerdrygsagfidaddpalrpcfkktpdslfcgfvgnrpLyW---NGMGGVLLTAGAR 60  
WP_157898074  112 Skstvfgdarlgkwshikeriapigdgivl---gedydprnnpdydhadketwgkggksdlIqMktgYEGGHTLIVGGTG 188 
WP_014924702  422 AGKGQTYIEpMLDm---------wQrerrpnNMVINDPK-GELLvK---NYvRaSvR-GFQVVQFNLINvl----kTDIY 483 
WP_012486877   58 SGKLRDLLAySLCgiqhenygwlaPp-----RLLVNDPR-GELA-AisvHN-Q-V-RfGKAAYCINPFGlhg--lpQHRL 125 
WP_165326939   57 AGKSRDVLMeAIIrc--------aGq-----RLWVLDPR-GELA-AvtiHN-F-A-AhGAYAYCWNPVKlhahilpSHRL 118 
WP_046478093   60 TGKLTTVLGpVFCgv--------aDr-----SMIVLDPR-GEMA-AtfaPA-L-A-LrGIKTYRWNPYGlhg--lrAHRC 119 
WP_165326438   57 AGKSRDVLMeAIIrc--------vGq-----RLWVLDPR-GELA-AvtiHN-F-A-AhGAYAYCWNPVKlhahilpSHRL 118 
WP_233421784  128 EEYYRASAEpNALl---------hTg-----ALFVYE-RyGSIY-RavhER-R-K-KlGQRIIVIDPHGqag--aeTDQF 186 
WP_064334299  234 GYKTTSVTIpTALk---------wGg-----SLILLDPS-NEVA-PmvsRH-R-E-AaGRRVRILDPRKp------ATGF 288 
WP_041699188  233 GFKTTSVVIpTALt---------fKg-----SMIVLDPS-TEIA-PmvsEH-R-T-RnHQEVVSLDPRLp------HIGF 287 
WP_194215259   61 GGKLRDILAySMLdg-------myEg-----TLVMLDMK-GECA-Yi-sQN-Q-T-RlGKPCIYWNPLAlhggslpQHRI 122 
WP_157898074  189 AAKTAAYVIpTCMk---------yPh-----SLVVVDPG-GSAL-RqcyDK-R-V-AmGRDIREVSPEH---------GL 240 
WP_014924702  484 NPLgmaaEAarEgnstaCALYVENIAEVFfpVD--GAd----dPVWPNAANNAFKRTAYgMIdfyLEEErqmrkrAaaeg 557 
WP_012486877  126 NPW----DLidPas-ptFHADLTLLVNDL--IPlsGss---naEYFEIRGRQWCEALAQ-DY---AVt------------ 179 
WP_165326939  119 NPL----DIldEad-prFHADCGFIAAAL--IPfsGss---ngHYFELRARQWLELLIK-SL---VEq------------ 172 
WP_046478093  120 NLL----DFidPkr-ptYHADCKLAGHAI--LTveSkg---dgKYFERRGSGWVEAFIK-FD---VEt------------ 173 
WP_165326438  119 NPL----DIlnEad-prFHADCGFIAAAL--IPlsGss---ngHYFELRARQWLELLIK-SL---VEq------------ 172 
WP_233421784  187 NPC----DFirQqg-egLIADAGLIADTL--LApafv--qeldEqETRAARTLLQGFIV-YT---MQTSl---------- 243 
WP_064334299  289 NAL----DWvgQyg-gtKEEDIASVASWI--MSdsGRasgvrdDFFRASGLQLLTAIIA-DV---CLSG------Ht--- 348 
WP_041699188  288 NVL----DWigKhg-ntPEEDIASVAAWL--MSekPRvssgsdDFFRTTAEQLIAAVIA-DV---MLTD------Ld--- 347 
WP_194215259  123 NPV----DYihAds-ptLIADTKVFAENM--IAlsGsn---ngEYFELRGREFLEAVIL-TI---VDm------------ 176 
WP_157898074  241 DVM----AMmkHcl--kTSRDFRHLADMM--IVreKdse--fsKFYAEESITVLAALLE-YF---TNEM------Pt--- 297 
WP_014924702  558 wDQ-------------KvleTkldeswgkV-TLyncYQlfVqlSakklkDpitrlnedvqagkygdlENdLDaQALfnEH 623 
WP_012486877  180 fGT-------------V---T--------LlAL---YDm-V--Nave------------------dpDA-WP-VLY--DR 207 
WP_165326939  173 hGK-------------A---S--------FpML---RDv-L--Nai--eGd---------------aLF-WD-AQL--RA 201 
WP_046478093  174 nGS-------------A---N--------LyRL---MEm-V--Nla--eSa---------------sPL-WP-GLI--EA 202 
WP_165326438  173 hGK-------------A---S--------FpML---RDv-L--Nai--eGd---------------aLF-WD-AQL--RA 201 
WP_233421784  244 kES-------------R---S--------LaEV---RRnlV--------Mp---------------sHR-FY-KIL--ED 269 
WP_064334299  349 pKEr------------Q---T--------LrQV---REn-L--S-----Ep---------------ePK-LR-QRL--QD 375 
WP_041699188  348 eIEddpdedpefktgeK---S--------LrMV---RKr-L--A-----Qp---------------eKT-LQ-KKL--EK 386 
WP_194215259  177 dGA-------------L---T--------LpRL---YEi-I--Nli--pGn---------------sEA-WV-EFA--FQ 205 
WP_157898074  298 ---------------vG---V--------FeGV---AQv-V--H-----Lp---------------eSK-MK-AML--VD 321 
WP_014924702  624 L---ADakerMPmwngeqeVDmlTLFfnatdklpvNSmrtLVgN----SDKalrAMGGaekMLASvygIaITAMSFFvDP 696 
WP_012486877  208 M---AAsps--------mdVR--RTA---------TE---IQ-NkrkkVPK---EYSA---IMGE---L-FKYLGFLnDP 251 
WP_165326939  202 M---EDskh--------gdIR--AGA---------AE---IW-HkqkdVPK---EFGA---ILGT---I-KGQLGFLnDP 245 
WP_046478093  203 M---THsqf--------adVR--RTA---------GE---II-TkqqeSSR---EFGS---ITGE---I-YGALSFLdDP 246 
WP_165326438  202 M---EDskh--------hdIR--AGA---------AE---IW-HkqkdVPK---EFGA---ILGT---I-KGQLGFLnDP 245 
WP_233421784  270 LmgiESad---------grIS--DIA---------LT---IL-Dm---TED---QRMS---IIEA---C-RMATADFdNP 312 
WP_064334299  376 I---YDns-gSDf------VK--ENV---------AA---FV-Nm---TPE---TFSG---VYAN---A-IKETHWLsYQ 417 
WP_041699188  387 I---HKnt-sSRf------VR--ENV---------AP---FI-Nm---TEQ---TFSG---VYAT---A-TKETHWLsYE 428 
WP_194215259  206 M---NEcgf--------eiSR--RIE---------EE---IA-EsrhgESA---GMRG---ILGE---I-FKSFSALsDP 249 
WP_157898074  322 I---VGas-aNPt------IS--AAL---------LG---LI-Ek---DSK---FFTY---FSST---L-QQSLKWTmYP 363 
WP_014924702  697 TISTLTsgtlsqnidlggmsfprrfgvrfdqnyvrrynligmqalwdsfSdpgfteslgkdfehedtvsregwaraffeg 776 
WP_012486877  252 TIRDTL-------------------------------------------Sg----------------------------- 259 
WP_165326939  246 TLMDSL-------------------------------------------De----------------------------- 253 
WP_046478093  247 VLAASL-------------------------------------------Ed----------------------------- 254 
WP_165326438  246 TLMDSL-------------------------------------------De----------------------------- 253 
WP_233421784  313 AIARVV-------------------------------------------Sn----------------------------- 320 
WP_064334299  418 NYAALV-------------------------------------------Sg----------------------------- 425 
WP_041699188  429 NYAAVV-------------------------------------------Sg----------------------------- 436 
WP_194215259  250 VLLDSI-------------------------------------------Sp----------------------------- 257 
WP_157898074  364 DMIQMV-------------------------------------------Sv----------------------------- 371 
WP_014924702  777 iypndvaylrlrlfntdsStlvktfyfrftksyqtnlkgriyikDpvlgtkivkngllvemvptrdpkkmglgsttFeqe 856 
WP_012486877  260 ------------------S-------------------------D-------------------------------Fs-- 263 
WP_165326939  254 ------------------P-------------------------D-------------------------------Fs-- 257 
WP_046478093  255 ------------------P-------------------------E-------------------------------Fs-- 258 
WP_165326438  254 ------------------P-------------------------D-------------------------------Fs-- 257 
WP_233421784  321 ------------------S-------------------------T-------------------------------Fg-- 324 
WP_064334299  426 ------------------S-------------------------T-------------------------------Fr-- 429 
WP_041699188  437 ------------------R-------------------------S-------------------------------Fh-- 440 
WP_194215259  258 ------------------Py------------------------D-------------------------------Fs-- 262 
WP_157898074  372 ------------------D-------------------------S-------------------------------Pd-- 375 
WP_014924702  857 vlnidqltldqinsgnNDLIkkvkgrrnavlstqvhysEKpK-AVFLV--TPPHl--MKYAKLILILLKQLVDLNFDksy 931 
WP_012486877  264 ---------------lEVLC------------------QR-DcNVYLM--IPAEy-iHQLAPMLRAIIGAAMLYKQRnp- 305 
WP_165326939  258 ---------------lADLVn----------------pHQ-VaSLFVN--VPMEy-vSIWSSLLRVLFTVSRLYKGRap- 301 
WP_046478093  259 ---------------lAEICa----------------sSQ-PvVVFIM--IPAEy-lHQCASALRLFLTACMLHKSRqp- 302 
WP_165326438  258 ---------------lADLVn----------------pHQ-VaSLFVN--VPMEy-vSIWSSLLRVLFTVSRLYKGRap- 301 
WP_233421784  325 ---------------mDDLT------------------GR-PvSIFIVgqM-GGdtpATQTAFSRVMIGAMMQLIARrdw 369 
WP_064334299  430 ---------------tEDIA------------------SG-KtDVFIN--IDLKt-lETHAGLARVVIGSFLNAIYNrd- 471 
WP_041699188  441 ---------------tEDIA------------------SG-NmTVFIN--IDLSt-lENHPGMARVIIGAFLKALYNrn- 482 
WP_194215259  263 ---------------lSQLCe----------------gSQ-AyNFYMM--PPAEf-iDGWRSVIKAIFVGAMIYKSRap- 306 
WP_157898074  376 ---------------aPPAL------------------GD-QtDLFIT--LRMDd-fKQFPGLVRLILGSVTYDMKLre- 417 
WP_014924702  932 mtkstQ-K-PlykTRYMLDELGNLqseghGISGFETMLSIGLGQEQQFTLILQTLQQLRDV-Y-GESVDKIVQGNAANLV 1007
WP_012486877  306 ------sApR---VLFLVDEAATLg----RFESLLRGYTYGRGMGIRVWSIWQDIGQISRN-Y-GRDALSGFIGSSQMRQ 370 
WP_165326939  302 ------dApR---LTMIVDEAGQMg----RFESLLSAFTFGRGEGVRTFAVFQDVGQIIRN-F-DAATLQSFIGSAQLRM 366 
WP_046478093  303 ------gSrR---LLMLIDEAAQLg----TFPTLLWLYTYGRGIGIQPWTFWQNVGQISHN-F-GSTGPESFKGSSQMRQ 367 
WP_165326438  302 ------dApR---LTMIVDEAGQMg----RFESLLSAFTFGRGEGVRTFAVFQDVGQIIRN-F-GAATLQSFIGSAQLRM 366 
WP_233421784  370 ----ksgDaE---FLVLLDGIEAVg----RMPLFERLLGGGFGDGMIIWPGFSGVSGLMDVcL-N---WENVVGKADAIS 434 
WP_064334299  472 ----gTmDgR---ALFLLDEVARLg----YMRILETARDAGRKHGITLTMIYQSIGQLRET-YgGRDASSKWFESASWIS 539 
WP_041699188  483 ----gDvSeR---ALFLLDEAARLg----YMRIIETARDAGRKYGITLLMLFQSLGQMREA-FgGRDATSKWFESASWVS 550 
WP_194215259  307 ------sApR---QTWILDECAQLg----SFPLVPKLFTYTAGIGIRPVAVYQSADQMELT---GRGAKTIIPSSAAVRI 370 
WP_157898074  418 ----tRaKeK----LMIVDEAPLLg----YFPLFEDIRDRARQFRLHLMIVFQNIGQIEEA-Y-GRSGPKSWNDVAS-RA 482 
WP_014924702 1008 FLKSTDdS-MLDTLQKMSGvRHKVYRDSK--SVTK---------NAekvaf---------ktagtVT----YNMT-AKEI 1061
WP_012486877  371 FFGVRDlD-TARMVSAMLG-SQTLEYDQEl-DQMRaqvaqaqiiSElfsggdpfaagmnysyqaqAA----IHRV-KQAR 442 
WP_165326939  367 FFGVRDyQ-TAQLVSNMLG-NQSLRYDDPl-QQEGarrqqqqalSRflfegdtsa-afdyahyrkAS----QHES-MMQR 437 
WP_046478093  368 FLGARDyS-TASLISNMLG-TETLEYTDTr-LQEEarrrkrqaaHRamigddvssavmeaahfgkLE----RMKT-KQQR 439 
WP_165326438  367 FFGVRDyQ-TAQLVSNMLG-NQSLRYDDPl-KQEGarrqqqqalSRflfegdasa-afdyahyrkAS----KHES-MMQR 437 
WP_233421784  435 VLS-QDgAfNLDWVAGLTA----M---SKfdDTG----------Gg-------------------VSgdrpVHLRpQDNQ 477 
WP_064334299  540 FAAINDpE-TADYISRRCG-MTTVEIEQV--SRSFqsr------------------------gssRT----RSKQ-LAAR 586 
WP_041699188  551 FSAVNDtD-TADYISRRCG-TTTIEVDQV--TRNSngg------------------------rngRT----RSKQ-ISQR 597 
WP_194215259  371 YFTIRDeE-GSARLSRMLG-HQTLEYDDTl-TQGRddmarkeaiHAmlngaspvetahklnhyrmAA----KNRS-KQQR 442 
WP_157898074  483 YSAIGDlG-EAEALSRMIG-TFTVDVAEN--TQGAs-------gATlatva----------qssnMS----LSER-TQQA 536 
WP_014924702 1062 PVISYNDLAfL 1072
WP_012486877  443 LLMTPDEVLnM 453 
WP_165326939  438 ALMTPDEILaM 448 
WP_046478093  440 KLMTEDEVLaL 450 
WP_165326438  438 ALMTPDEILaM 448 
WP_233421784  478 PILRSTEVArF 488 
WP_064334299  587 PLIQPYEVLrM 597 
WP_041699188  598 PLILPYEVMqM 608 
WP_194215259  443 LLRTPDEILkT 453 
WP_157898074  537 ALVTPDEIMqL 547 
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