6SA0


Conserved Protein Domain Family
LigD

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COG3285: LigD 
Eukaryotic-type DNA primase [Replication, recombination and repair]
Statistics
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PSSM-Id: 442515
Aligned: 435 rows
Threshold Bit Score: 256.97
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6SA0_A         4 SAATELD---V-DGVKVRFTNPDKVYFPKlGKngTKGKLVEYYLSVAsGPMLALLRDRPVHLQRFPDGIEGEEIYQKR-V 78 
WP_012870801   6 ADIQVLQ---V-DGREIVVTSPDKVLWPQdGL--TKTDLLDYYQAVA-PAMLPYLRDHPVTLRVFPGGIDRPGHYRRD-L 77 
WP_002609400 543 ATRSQVQeepAeAEGRARLTHGDRVLYPQeRL--TKQDVFAYYREAA-PLLLPVLANRPLAVQQWPAGIQAPGFFRHE-L 618
WP_013457116   2 ARREVWG---L-AGRRVEVKNLDKVFWPEhGY--TKGDLLRYYREVA-PVMLPYLRGRPLTLVMCPDGIAAGCYYRRK-R 73 
WP_014393807 562 TPRGKSR-----HAPEVVLTHGDRVLFPQaGL--TKADVFAYYEQAA-PLLLPVLADRPLAHQQWPGGIQAPGFFRHE-L 632
WP_025226396 540 GEELQLT---I-DGNPIRFTSLSKELWP--GI--TKRDFVRYLASVS-DIYLAHLRDRPVTFVRYPDGIGGEGFFQRH-W 609
WP_047855716 578 ATRAPSP---V---APVVLTHGERVLFPQkGF--TKADVFAYFRDVA-PLMVPALTGRPLALQQWPRGVDEPGFFRQG-V 647
WP_050724733 326 iPK--AR-----SDAGVRFTHPDRILFPRdGI--TKADVAAYYQAMA-GPLLRALSGRPVALEHWNEGIDEPGWFHQKiS 395
WP_095979740 559 TATARKG---A-AGEPVVLTHGERVLFPAvGL--TKADVFAWFQDVA-PLMVPALAGRPLTLQQWPQGIQAPGFFRQG-V 630
WP_095984992 587 AAAAKKG---A-SAALVGLTHGDRVLFPEpGY--TKADVYRYFQDVA-PFMVPALAGRPLTLQQWPQGVKAPGFFRQG-V 658
6SA0_A        79 PQKHPDYLETCVVTFPs-GRTADALKITHPSSIIWAAQMGTVTLHPWQVRCPD---------------------TEHPDE 136
WP_012870801  78 PKDAPDWLPSATYSPAsrAGELHPPLIPDAAALLWYAERGAIEFHIWLATADR---------------------LEQPDW 136
WP_002609400 619 -SGMPAWLPTLRVKHE--AKTLAHVNVQSLEALLWLANQSALTLHIWSSHAPK---------------------LAQPDW 674
WP_013457116  74 PDYAPDWMPYVPYNPRtkTGQVPLILVEDEAQLIWLANQAAVEFHVWASPARD---------------------LAHPSW 132
WP_014393807 633 -SGIPAWMPTLRVRHE--DKTLRHVNVKDTSALLWLANQSALTLHMWLSHAPR---------------------LAQPDF 688
WP_025226396 610 EHRLPEFVETAKIFSQnnGKALDFVLCNNLASLLWFGQVAAIELHPWHSRVTTspdavglgaqfdtlenleesvLEYPDY 689
WP_047855716 648 -QGTPDWLTTTCIHHE--ARSLPHVVVDRPESLLWLANQSALTLHIWSSRVEH---------------------LEEPDW 703
WP_050724733 396 DDDARSWMTLAAIPSQsgRRLERRLLVDDRETLRWLAQRSVLTVHMWSSRTDS---------------------LNEPDW 454
WP_095979740 631 -ESAPDWLTVTRIRHE--ARLLSHVVVDRPESLLWLANQSALTLHMWSSRVPH---------------------LKQPDW 686
WP_095984992 659 -EHVPEGLSTVRITHE--TRELSHVVVDRPESLLWLANQSALTLHMWSSRVPH---------------------LEQPDW 714
6SA0_A       137 LRVDLDPQ--------------PGTGFKEARTVACDVlKPLLDELGLVGYPKTSGGRGVHVFLRIKP-QWDFIEVRRAGI 201
WP_012870801 137 AVFDLDPG--------------DEVDFPAVLDAALLV-RDTLAAQGIDGYPKTSGGRGLHVFVPLEP-VHDFAAVRDWVR 200
WP_002609400 675 VVFDLDPG---------------KGPWEDVITVAQAL-REKLEALGLESLPKTSGKRGLHVLIPLAP-GHTYAQTQRFAE 737
WP_013457116 133 LVLDLDPG--------------NATGFGAVLEAARFV-RKELEELGLVGWPKTSGGRGLHLLVPLEPgRYSHAEVRAWAK 197
WP_014393807 689 VVFDLDPG---------------EGGWKDVVKVATLL-HARLDELGLKSFPKTSGKRGLHVLVPLAP-GHTYARTQAFAD 751
WP_025226396 690 LVCDLDPNirsglekegaepelNEAGWRRTVEVAFGL-KEMLDSLRLKSFVKTTGKTGLHVYLPLER-HYDSTQVREVAR 767
WP_047855716 704 VVFDLDPG--------------PAGTFDDLIQLTLSL-RRYLEGLGLASVPKTSGKRGLHVLVPLAP-GHTYAQAGAFAN 767
WP_050724733 455 AIFDLDPA--------------EGEDIRQAVDVAGAL-KALLDALGLPSLAKTSGKRGLHVLVPMAP-GQRHDEAVRFAL 518
WP_095979740 687 VVFDLDPG--------------PKGTFEELIELTLGL-RRLLERLGLASVPKTSGKRGLHVLVPLAP-GHTYARTRAFAL 750
WP_095984992 715 VVFDLDPG--------------PGGTFGDLIELATGL-RRYLERLELVSVPKTSGKRGLHVLVPLSP-GHTYEQARAFAH 778
6SA0_A       202 ALAREVERRAPDAVTTSWWKEERGERLFIDYNQNARDRTFASAYSVRKTPIATVSMPLSWDEL-Rn-ADPDDYTMNTVPD 279
WP_012870801 201 GIAAQLAEEHPDQIAVAARGTHEGQRVTVDHAQNSVARNTAAPYTARGHPGAPVSAPVTWDEVaAgtIRPDQFTLRTMPE 280
WP_002609400 738 KIAAELETELGSLATTERTIQKRRGRLYLDVGQNGRGKTVVAPYSLRAIPGAPFSAPLAWSEVtRk-LDPLRFTLKTLSK 816
WP_013457116 198 AFAARLAERSGGLLRLPHGATHRGSGVFVDYAQNGYGRNTAAPYSLRARPGAPVSTPLGWDEVeAggFQPADFNLETVPE 277
WP_014393807 752 ARARELEEELGDIATTERSIRERGGRLYIDAGQNARGKTVVAPYSLRAVEGAPFSAPLEWSEVnSr-LDPHRFRLKTLKK 830
WP_025226396 768 TLGQHLMERMPGKITMEIRLNKRPNLVFFDANMNGRGKTLASAYSPRPVPGGRVSMPIAWEMLdQ--VHPDEFNIFTVPK 845
WP_047855716 768 KAFEAVAAEHPRLATVERSKERRQGRLYLDAGQNAWGKTVVAPYSLRALPHAPVSTPLSWSEVtPk-LNPARFTLDSVRR 846
WP_050724733 519 TVGRAVEQVLPQ-VTLERMKDRRGGRLYIDCYQNGYGKTIAAPYSLRASDGAPVSAPLRWDEVnEg-LEPGAFNLRTMPG 596
WP_095979740 751 QVFEALAQEYPELATTEHAKTRREGRLYLDAGQNAWGKTVVAPYSLRALPHAPVSTPLKWSEVtRr-LDPTRFTLETLRR 829
WP_095984992 779 ETFAALSEEYPELATIERSKSRRQGRLYLDADQNAWGKTVVAPYSPRALPHAPVSTPLAWSEVtRr-LEPSRFTLGTLRK 857
6SA0_A       280 LLAGRDDPWADIDSVQQSLGPL 301
WP_012870801 281 RIQQLGDLWAPALNAPQRLPG- 301
WP_002609400 817 RLDAVGDLFARALHGTQTLP-- 836
WP_013457116 278 RLRRSGDLLHGLQEHRQRLADL 299
WP_014393807 831 RLDAVGDLFAPVLRVKQVLPDE 852
WP_025226396 846 LLATNGDEWHGILNARQLLAVG 867
WP_047855716 847 RLDKVGDLFAPALAGGQTLPPA 868
WP_050724733 597 RLDEVGDLFGPILEKGIRLPSL 618
WP_095979740 830 RLDKVGDLFAPALEGGQTLPSS 851
WP_095984992 858 RLDKVGDLFSPALKGRQSLPNR 879
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