Conserved Protein Domain Family
RlmF

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COG3129: RlmF 
23S rRNA A1618 N6-methylase RlmF [Translation, ribosomal structure and biogenesis]
23S rRNA A1618 N6-methylase RlmF is part of the Pathway/BioSystem: 23S rRNA modification
Statistics
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PSSM-Id: 442363
Aligned: 115 rows
Threshold Bit Score: 452.313
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_014950285   1 MHPKNLHKNGYPMDTLCQTYPALKSFLVRAKS-GNT-SIDFTSPKAVKVLNAALLHHYYRLEYWDIPDGYLCPPVPGRAD 78 
WP_011043082   1 MHKKNRHNQGYNFTALVKAHPGLLQFIIKNQY-NNQdTIDFANPQAVKALNLSLLKSEYHVKFWDIPDGYLCPAIPGRVD 79 
WP_013752198   1 MHPNNKNIGPYLFKQLRKANKELAPYVLETDR-GIQ-TIDFTNPKAVLELNRAILLSDYSLNWYEIPEGYLCPAIPGRVD 78 
WP_052236752  13 LHPRNRHRTGYDFPTLGQILPELSGYIIHNQY-GKL-SIDYANPKAVKLLNKALLLQSYRIKFWDIPDDYLCPPIPGRAD 90 
WP_045750861   1 MHPRNKHQGRYDLQSLSLANPSLKSFVKLNAF-NDL-SIDFANPIAVKALNKALLMLDYNITDWDIPDQFLCPPIPGRAD 78 
WP_060689386  10 IHPDNPYNANYDLPKLQEQYPALEQYIIRKKH-GGL-TIDFSNAEAVNALNAALMLESCQLKYWKLPVHNLIPAIPGRMD 87 
WP_062054115  14 LHPRNIHNSPYNFEALIKAYPALAPFVHKNQH-DNL-TIDFSVNEAVIALNRALLILHYRVGYWDIPANYLCPPIPGRAN 91 
WP_066215065   1 MHPKNIHKTGYQFELLQNAIPEITSHIVITKG-GKQ-SINFHDPIAVKLLNRALLKAHYKINHWDIPEGYLCPPVPGRLD 78 
WP_102242806   6 LHSRNKHRAGYDFIQLKKSTPELAAFIIKNKFnGSD-TIDFSNPEGLKLLNRALLKSEYGIHFWDIPKNYLCPPVPGRVD 84 
WP_118501363   1 MHPKNIHNTPYDFLALIKSLDTLEKFVFTNTF-GNL-TLDFSNPEAVLELNKAILKYYYAVHNWDIPKGYLCPPIPGRVD 78 
WP_014950285  79 YIHGIADLLKSSAQGEQSqqgKDQNVRGLDIGVGANAIYPIIGVTSYDWSFVGSDVDDVAVKSAKAIASKNSVLAHKFQV 158
WP_011043082  80 YIHHLQDLLAATPKTLLP---NKTPINVLDIGTGASCIYPILGQREYDWHFVASDVDPISIKVAKHIISSDKSLNRNINC 156
WP_013752198  79 YLHYLNDFIGKE------------DVHGLDIGTGANFVYPLLAGSVFNWKMKGVDIDAKAIRNANTILEKNTHLKGFLTA 146
WP_052236752  91 YIHYLADLLAMDNYNRIP---QGKAIRLLDIGVGANTIYPIIGHTEYGWSFVGSDISATAIKMAKLIAKMNPPLTSSLTY 167
WP_045750861  79 YIHFLADLIGHN---------QTSVVKGLDVGVGANVIYPLIGHREYEWDFVGVDINLIAIQNAQRVLDKN-NLSSAIEL 148
WP_060689386  88 YLCHLKDLLEKDSEQPI----DHSKIKGIDIGTGAGAVYPILGNKHFQWKFLASDIDQKSVNNALKILKENKVSRKVIDV 163
WP_062054115  92 YIHHISDLLDAAI--------HKGSIVGLDIGVGANCIYPILGAQIYGWQMVGADIDKTAVAGAQSNVDLTPKLENKIQI 163
WP_066215065  79 YLLGINDLLNETTKl------TPKDIKGLDVGTGANMIYPLLGVSQFKWKFLASEIDERALENGVKLLKDNKIPISKIHL 152
WP_102242806  85 YIHYAADLLKSPG--------KNEAIRVLDIGTGANCIYPLLGESVYGWNFVGAEIDEGALQSAKANVEKN-NLQSKIEI 155
WP_118501363  79 YIHHINDLLETN---------ASKSIKGLDIGTGANCIYPILAAKVYNWTMVGSDINKTAIAAARQNIETDSELSKKIEI 149
WP_014950285 159 RKQLNRASIFNGVIEANERFTFTMCNPPFHKSAQEALSGTRRKTSNLTRNKqkrsgtkftdnrkqgfghrtsklqgknaa 238
WP_011043082 157 RLQPNSNQIFNGIIAEDEFYHLTICNPPFHSSLAEASKGTARKIKNLNKGNhs--------------------------- 209
WP_013752198 147 TYQQDRANIFTGAILPGEHYDFTMCNPPFYSSEKDAFKATKEKSKGLKLKE----------------------------- 197
WP_052236752 168 RWQKNKRNIFTNIIKPNEQFALTLCNPPFHASLAEAQAATNRKLTNLGKTFc---------------------------- 219
WP_045750861 149 RLQKNPKQIFNGIIREQDFFEFSMCNPPFHASLKDAQAGTKRKMNGLAKTSgnr-------------------------p 203
WP_060689386 164 KLQPTSHYYFTNIIG-EERVDFSICNPPFFSSEEEAQKANQRKWDQLKVEK----------------------------- 213
WP_062054115 164 RHQSNKAHIFQGIIKEGEYYHFTMCNPPFHTSKEEAEKGTLRKLKNLHGIK----------------------------- 214
WP_066215065 153 KKQNNPTKIFDNIIGERDRIAFTMCNPPFYKSKEEAESATTRKNKNLNQEN----------------------------- 203
WP_102242806 156 RKQNDRTKIFQGIILPGDQYDLTLCNPPFHSSKEEAQKGTARKNKNLKT------------------------------- 204
WP_118501363 150 RFQESNANIFDGIIKPDEYFDFTICNPPFHKSKEEAQKGTLKKLQNLKGTS----------------------------- 200
WP_014950285 239 yqGKDANLNFAGQANELWCEGGELAFIQRMVQESVSVKDNVEWFTCLVSKSAHLKPIKTSIDYYGAAQCKVIDMGQGSKL 318
WP_011043082 210 skNQDKTLNFGGQKAELWCPGGELAFIGKMIKESKAYQKQVLWFTCLVSKKDHLSKLKLSLKKSDAKQIKVIDMAQGQKI 289
WP_013752198 198 -----VERNFAGQSNELWCNGGEALFIKRMVKESVNFKSQVGWFTTLVSKSEHLAKIKKQLEKLNA-EHRTVDMSQGNKK 271
WP_052236752 220 -hVKQPVHNFGGQNNELWCDGGEVAFINTMIEESKNYKDQCLWFTSLISKKDTLSIIKKKLEKIKIQDLQVVTMAQGQKI 298
WP_045750861 204 skTENPTLNFGGQAEELYCEGGEISFINQMIEESQRYQHQCRWFTTLVSKSSNLPKIQHLLKASSVKKTNVVEMSQGQKQ 283
WP_060689386 214 --SENNKFNFQGTSSELWAKGGELQFVRQMIFESKRYQDQCLWFSSLISNKDHLFPLKKQLRKVGVEDFEIIQMAQGNKV 291
WP_062054115 215 ----HLALNFGGQANELWCNGGESLFIKRMIKESVGFKNQVGWFTTLVSKKEHLPKIYKQLQKLKA-QYSTVTMEQGNKQ 289
WP_066215065 204 ----LKDRNFGGLKNELWVKGGELQFIKNMMKESVNYKDQVVWFTTLVSQQAHVSELNKTIRKLKA-NIRIVDMNQGQKK 278
WP_102242806 205 ----KERLNFAGQAQELWCEGGEGEFIRKMILESVLFKDQVKWFSTLVSSKENLSGIYGELKRNKALKVETVEMSQGQKI 280
WP_118501363 201 ----DLQLNFGGQSNELWCNGGEALFIKRMIKQSISFANQVGVFTCLVSKKENLPKIEKQLNKIKA-DHTIIEMSQGNKK 275
WP_014950285 319 SRFVAWTF 326
WP_011043082 290 SRFIAWSF 297
WP_013752198 272 SRFLAWRF 279
WP_052236752 299 SRFIAWSF 306
WP_045750861 284 SRFVAWSY 291
WP_060689386 292 SRFIAWTF 299
WP_062054115 290 SRFVAWNF 297
WP_066215065 279 SRFIAWSF 286
WP_102242806 281 SRFVAWSF 288
WP_118501363 276 SRCITWKF 283
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