Conserved Protein Domain Family
SmrB

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COG2840: SmrB (This model is not part of the current CDD release)
Stalled ribosome-rescuing mRNA endonuclease or DNA-nicking endonuclease, Smr domain [Translation, ribosomal structure and biogenesis, Replication, recombination and repair]
Statistics
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PSSM-Id: 512527
Aligned: 906 rows
Threshold Bit Score: 58.6782
Created: 24-Mar-2025
Updated: 26-Mar-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_014746896  86 RG---ISR-GE-LDLFGSAMSDVKPlsghapvvpppppppppvp------------elpaaamaaslpapagrrPTap-- 146
WP_111336646 211 REa--VGQaRE-MRLFEKTVGKVDKvmrsdkyrlpsepdpvkdaer--------rtapavyssespeslitpplPKs--- 276
WP_012030894   1 ------mtdkKtPS-FAELIGAVQKihkppqspdfgrvaktl--------------------------qplrlqaqhkre 47 
WP_141198080 145 RQd--LDMlRE-MRQFEKAVGPVDKlvrndkyrrksspdpkkda------------eralsyrsespdmitpalPKs--- 206
WP_146960792  46 epaepspeplnpedlsdealfaaaldeidkgaiyagkfgnlndewrpkssevvetvtvedvrkkqddlyfermigqlqkr 125
WP_004513482  49 RA---AEP-DD-LSLFLREMADVRRirpaaepspkkggekapeprelaeaaeirrqqeaeehrvfanaisnlrlDV---- 119
WP_011940688  44 PVv--KEL-DD-AELFLREFSDVRRlhppastpgkapkpaapiar----------kideeerrlflqaleklemDV---- 105
WP_235064942   1 ------mskrDt---FAELIGNVDNvkrsdthpnfqrqakvr-----------------------------------irk 36 
WP_183345029  48 PAnaaQEL-SD-EMLFFEAVAGIKRisgttppaqvkaqqtakar------------rdeedqevflkalealrlDV---- 109
WP_269039969   1 -------------------------------------------------maptadpqlpaagpvvppspagpasPVaalq 31 
WP_014746896 147 epL--Qa------lTGKA--FDGLDRRSQARLRRGAMPVEAMLDLHGHGREVARGMLVDFIARSHARGLRCVLVITGKGG 216
WP_111336646 277 -----GeglhkvgaFDPA--QRDLYDRYKKRSRQHE---VPELNVRGDVVEDALRQVELFVHLQCKEKRRFVRIIHGRGL 346
WP_012030894  48 ipqyfEq------eIDEN--YD-ITARAYQKMLRPDLYFAREIDCHGKYVDDALRYIQDALNFRKNKCLCYWLIIHGKGR 118
WP_141198080 207 -----GdglnnvgpLDAA--QKEMLDRYKKRSRRHD---VPEINFRGDSVEDALRQLELFAHQHWKGGARFVRIIHGRGL 276
WP_146960792 126 fedgkyytpehygseESL--RRAANHRYEKARRIGP---IPVLDLHDVTLKEVFEIMEAFVLKRQKEGAKFVRIIHGKGK 200
WP_004513482 120 --TfsDh------lPEEKg-EAPRPTSRLKQLKSGQIRVGLELDLHGLTKEEALESLESFIAAAHRRDQKAVLVITGKGN 190
WP_011940688 106 --VfqDe------lPEDVspLRPLPSNRLRQLRRGTIRIDFQLDLHGLTRDEALENLARFIGGAYNRGQKGVLVITGKGN 177
WP_235064942  37 rrhrdpivhrsfqrISHN--FDRIDPRLFHAMQYNRITADRVIDLHGLHVDHALRVLQDALNERRNRHLSCWQIVHGKGN 114
WP_183345029 110 --RfsDq------vQEEEaaPRPAAVNRLRQVRRGGIRIDLQLDLHGLTRDEALENLERFVKAAYNRGQKGVLVITGKGN 181
WP_269039969  32 krAwaGsgwrdepgRTHE--HARAAAELVARARRGR---LPTLRLRGLRREPAVEALTAFVARERAAHARYVRIVTGKGL 106
WP_014746896 217 PRPqpvvrrrgmavpetpepprepwatnpAGVIRSELPRWLNEPEtrsKVL--AFtqARQMHGGFGAAYILLKRER 290
WP_111336646 347 QSDg-------------------------LPVLKPAILHWLEGPGf-rYVR--GYvpERNSAGDYGSLIVELEREA 394
WP_012030894 119 NSLig-----------------------dRAPVKFAVIGHLRCHP---AIS--AIraLRDGRGESGAVVVAVKAQT 166
WP_141198080 277 QSDg-------------------------DPVLKPAILRWLEGPgf-rYVR--GYvpEVNSAGDYGSLIVELERRD 324
WP_146960792 201 NSAd-------------------------GPVLRPLVSQWVEAS-----VRciGCfpEIDVDGDHGVTVVELKRPS 246
WP_004513482 191 NSPg-------------------------EPVLQGAVLSWLRERGk-gKVA--EFapAPRELGGSGAIVVFLRTPG 238
WP_011940688 178 NSPg-------------------------EPVLQTAVAGWLRDKGk-gMVA--EFspAPRQMGGAGAFVVFLKDKE 225
WP_235064942 115 NSPhy-----------------------dRAPLKHAVIELILNHS---DIA--AVceIIDTDGRSGALVIALHPA- 161
WP_183345029 182 NSPg-------------------------EPVLKVAVANWLREHGk-gMVA--EFvqAPSDMGGSGAFVVFFKEKK 229
WP_269039969 107 GSPg-------------------------DPVLKEALAEWCASPAgeaDVA--AWapELDVRGEYGSVILQLRPRA 155
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