Conserved Protein Domain Family
YlmH

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COG2302: YlmH (This model is not part of the current CDD release)
Ribosome-associated quality control (RQC) protein YlmH, contains S4-like domain [Translation, ribosomal structure and biogenesis]
Statistics
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PSSM-Id: 512502
Aligned: 385 rows
Threshold Bit Score: 146.814
Created: 24-Mar-2025
Updated: 26-Mar-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
UWP25860       1 M-----------ADRELVKDIQNAARDCLDRSRPYFTRFLSESELAQIRAVG---IpKGLTALLCAGTGNADPlrCCLGL 66 
WP_075573526   1 Mvdels-flyndDEKIKYSRIEEKALIALNNFRAEPVDFLDPFWQEMSVSIAq-kY-DDLKAIFFGGMDNAEN--KYLVF 75 
WP_003144752   1 MkninflqqapaEQREVAEKLLQSISFVENR--NTVTKFLTNFEQIVLSQIVaynY-SDFKVEFFGGFDDAER--KKAKI 75 
WP_002608796   1 Msvai---ehyrGNEEFVRRLQDQIDRMERWNRVVVTPFFSPDQIQIAERFCg----hRILYRKDGGYAQAER--CRLAF 71 
WP_003536564   1 Mieh------fkGEEVFVKKVLEFKDQALYKQRLVLTKFLNPYHQSIVYSIVg-nQ-NDLIVIEDGGMVDSEM--KRLII 70 
WP_207300100   1 Mkk-------ydEESL---KVKNVCDLAQKDASSFWTEFFDPTQQKKLASALf---kQGVEHSFFGGHEDAER--KILFV 65 
WP_238928384   1 Mkt--------rDFDTLVAHLRDLQLKSELWNTCICSNFLEEAEQTKLLPLFp---eS-SCLYYFGGYKGAMK--KKVIF 66 
WP_008687965   1 Mpihf---ehyrGNEKFVKRIYDLIDLMERRRRIVVTPFFAPDECNICDAILg----hQIPYGKSGGYQGAER--CRYAL 71 
WP_006505099   1 Mleh------fkGDEEFVSKILDYKDQALYSQRMILTQFLDPHQQSIVESVIg----hELKVEADGGFDGAEN--KRVLI 68 
WP_125119295   1 Mleh------fkGEEAFVRKILDYQNQAEN-GKMVLTKFLDPHKREIIHDVIg-qR---AAIYEEGGFVGAEN--KRVII 67 
UWP25860      67 FPSYYfdgsaisdasyavvsdENTA-EQF-PIKAVTFTFR-KeDSVTHRDVLGSLMALGIERDTVGDIFVTDGKAAVFVY 143
WP_075573526  76 CPWYM----------------DLEA-KDF----ISIICFDnPyDDIKHSDVLGKLLSLGIDRRTLGDIFVGE-KVYIVVS 133
WP_003144752  76 ISNEY------------------YD-VDY-DIVCLKAKFNnKfNRVEHRNILGAVHNLGINFNRFGDIIVIENEVYIFVD 135
WP_002608796  72 LPWE-------------------EE-VQI-PVLHLKAKISySfGKLAHRDVLGALMNLGIERDKTGDLIVEQDAVHMFVD 130
WP_003536564  71 APSFY----------------QIEK-EDF-EIVLAKISYAkPfGTLNHRDILGALMSLGVKRELFGDIYEYEDNFYVAMD 132
WP_207300100  66 KASWD----------------ELE--ESA-PLVLLQMDVP---EKTTHRDVLGSLLSTGIKRDQVGDILVSSGKAYVFVL 123
WP_238928384  67 SPMG-------------------E--DGFsDIVCLKAKIDqRfRKIGHKDVLGALMSLQVERSSFGDFWIENDAIYLYTS 125
WP_008687965  72 LPYE-------------------DElADL-KITILKATYSpQfGKLAHPDVLGAILNLGIEREKIGDLIVKDNELIIFVD 131
WP_006505099  69 APDFY----------------EFEP-EDF-KVTVFRVDYNdTfGKLKHSDVLGALMHLGIKRQCIGDI--NEEPLSFACI 128
WP_125119295  68 CPDYY----------------EIVP-EDF-KIHVYEVGYSeKfDHLAHKDVLGALMHLGIERACIGDIC--KQPLAFAIT 127
UWP25860     144 EKVAPLISDSITKIGRVGVQVDIGITAGFTLPARKYEEMRFSVASMRLDNIVRCVACTSRTGAvEKYITPQLVTLNGTVC 223
WP_075573526 134 KSVESFLLTEFRDIRRHGIIPYTVDKAPSII-KDSYKETSVIVPSLRLDAIVSKVYNISRSQA-QGKIENGLLKLNYRVV 211
WP_003144752 136 EEIADYIAMEFTKAGRVNLDFQRVDLAEVGI-EKKYEDFEIVSSSFRIDSIVAKITNKSRSKV-KEFLEQDFIKLNHVVL 213
WP_002608796 131 PDIGNYLIANLTQIKRCAVHLEPSE--ESVSYEPDIAYKSLIVSSLRLDTLVAALARLSRAKA-ADLIRSKQVKVDHVIL 207
WP_003536564 133 AKIYEYVKNNLIKIKRSKVKILESE--EIITIKHQYISKTFIVSSFRLDKVVSTLYGVPRSKA-VSYIQSGFVKVNHKEV 209
WP_207300100 124 ENMANYIRTNVEHIRNQQANVTICSMEDVELPKPEFKIEHCVLTSFRLDNVVAKACKMSRSAT-GELVSKGLVKVDHEVA 202
WP_238928384 126 EDMVSFFEQHLTQVNQLRIHWERLT--DYPVYERAFREFEVIVASYRIDAMVSALMKTSREKA-KHQIQAGQVSVNHEMI 202
WP_008687965 132 EEIENYIVCNLTRIKRSNVHFKRYE--GEVTYEPKIRYEHKIVSSLRLDVLVSSFANISRKKA-QELIRAGLVKVNHVIL 208
WP_006505099 129 KENSDYIRMNLTRIKRSSIHLVEME--ERLSIHADTYTKTVIVSSLRLDKMVAALFGISRNKA-VDAIHGQYVKLNYKVI 205
WP_125119295 128 AENSDYVVMALKKIKRSSIRLIPHDF--SLTIVNDFKKKEFVATSLRLDKLISVMFGLSRAKA-MDAIHMGSVKVNHKVI 204
UWP25860     224 TDVSKQLSEGDVFSVRGKGKFILQCIGETGRKGNIHITIKKYI 266
WP_075573526 212 DKPATELKEDSLISLRSFGRVKVKEVVGQTQKGNLRLKVERLI 254
WP_003144752 214 RNGEKTCTSEDTISIRKYGRFVVKGYTQNKKSLKYRITISKLV 256
WP_002608796 208 EQTSYLCDNTCVISIRGHGRFQLKEVVKETKKGNLVIEVGMYQ 250
WP_003536564 210 EEINYLCNNSDIISLRRHGRVKFVDTKRRTKQDNYVVEGYFYK 252
WP_207300100 203 DKGTQNVSDGTLVSVRGYGRFIFRSLEGSTRKGNQKAEIHWYK 245
WP_238928384 203 EDAGKLCHNGTTISIRGCGRFQFIEIIRRTKSGRLVAHMKQYI 245
WP_008687965 209 EETSYLCNNNSAISIRGHGRFYFKEIVKTTKKDHLVILAGKYQ 251
WP_006505099 206 EDISKICDNNAIISLRHHGRVKIFITDRRTKQDNYVIEGQYYR 248
WP_125119295 205 EQTDYLCNNNDIISFRRHGRVKLQVTARTTKAGNYIVEGLFYL 247
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