Conserved Protein Domain Family
RFA1

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COG1599: RFA1 
ssDNA-binding replication factor A, large subunit [Replication, recombination and repair]
Statistics
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PSSM-Id: 441207
Aligned: 123 rows
Threshold Bit Score: 106.297
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011013165   5 TKEEIIKRILEeveGITLEEIenqirqimrennisehaaa---------------------------------------- 44 
WP_004044405   3 VIREVYDDLDT---DVEFEEFeaavndkveqmggladeetaamliahelrdeevngiadiepgmedvkflakvvsigevr 79 
WP_006056307   3 AIEDVYDDLDT---DVPFEEFeaavndkveqmggladeetaamliahelrdeevegiadiepgmddvkflgkvmsigelr 79 
WP_014052833   3 AIEDVHEELDA---DVTSEEFaemvaekveemggladdetaamlvaheledeggevegiadiepgmdevkfvakiisige 79 
WP_014555311   3 SLTDIYDELDT---DVSREEFesavedkveqmggladeetaakliahelrneevegvadiepgmdeakflakvlqigdcr 79 
WP_096390595   3 VIEDVYEDLET---DVEFDAFeaavedkveqmggladeetaamliahelrdeevetiadiepgmddvkflgkvtsigevr 79 
WP_089671261   3 VIADVYDDLDT---DVPLEEFreavedkveqmggladeetaamliahelkdeevngiadidpgmdevkflgkivsvgelr 79 
WP_103424198   3 VIEDVYEDVSP---DVDFEEFeaavqekveqmggladeetaamlvaheledaggevsgiadiepgmdevkfvakvvsige 79 
WP_119818000   3 VIEDVYEDLET---DVPLEEFraaveekveqmggladeetaamliahdlrdeevsgiadiepgmdevkflgkvvsigdvr 79 
WP_121921358   3 VIEDVYEDLDT---DVEFEEFeaavhdkveqmggladeetaamliaheledeevsgvadiepgmdevkflakvvgvgdlr 79 
WP_011013165  45 ------------------------------------------------------------------------lllaerlg 52 
WP_004044405  80 tferdgededg---------rvvnievadetgrirvslwdemaagakenlevgtvlriggrpkdgyngvevsaskveedl 150
WP_006056307  80 tferddededg---------rvvnvevadetgririslwdgmaeeatenlevgqvlriagrpkdgyngvevsvnkvepda 150
WP_014052833  80 rrtferdgdqed-------gqvvnaevadetgrirlslwdemaegaietleegevlriagrpkegyngvevsadkaevep 152
WP_014555311  80 tferdgdaedgr-------vinievadasgqirvtmwddmaddainqlevgqvlriggrpkdgydgveidvdtvepapda 152
WP_096390595  80 tferdddddree-------grvcnveiadesgsvrvalwdematgaaeeletgdvlrvmgrpkegynglevsankvepda 152
WP_089671261  80 tferdgedeedgyvvnmevadstgrirismwdqlavsavgdpegeqhgqldvgdvlriagrpkdgyngvevsvdkaepds 159
WP_103424198  80 iktferdgeded-------gkvvnvevadetgriraalwddaaeaavdelevgqvlriagrpkdgyngvevnvdrvepds 152
WP_119818000  80 tferdgedepdg--------rvcnvevadetgririslwdeaagaaedqlevgqvlriagrptdgydgvevsvdkvepde 151
WP_121921358  80 tferegdgdddeeev-degrvinvevadetgqvrisfwdrmaqsvadgeldvgdvlrikgrpqegysgvevsvdqaevde 158
WP_011013165  53 vevtkreeqpLMKISDLYPGMdpHEVNIVGRILKK-YPPREYTKKDGSIGRVASLVIYDDTGRARVVLWDSKvLEYysKL 131
WP_004044405 151 daevdvqvldSYRVEDLALGL--SDVNLEGKILDA-GTVRTFDRDDGTEGRVSNLSVGDPTGRVRVTLWDER-ADLaeEL 226
WP_006056307 151 daeidvqtqdSYRVEDLSLGL--SDVNLKGRVLST-DSVRTFDRDDGSEGRVANLTLGDSTGRIRVTLWDDK-ADLaaEF 226
WP_014052833 153 gmeievslsdSYTVEALSMGL--SDVTLVGELLDVdDDYRTFDRDDGSEGRVANVAIGDETGRIRVTLWDEG-TDLleVL 229
WP_014555311 153 eidvdihtvnTHRVEDLSLGL--SDVNLRGRVLST-DKIRTFDRDDGSEGRVANLSVGDPTGRIRVTLWDGS-ASLvdSV 228
WP_096390595 153 daevdvqlldAYRVEDLTLGA--SDVTLVGTVLEA-GDVRTFSRDDGTEGRVANLTLGDETGRVRVTMWDDR-ADLaeEF 228
WP_089671261 160 eaevdvevldVHRVEDLSLGL--SDVNLKGRILDV-GTVRTFDRNDGSEGRVSNLAVGDPTGRIRVTLWDEK-ADLvdEL 235
WP_103424198 153 etavdvqvldTYRVEDLSLGL--SDVNLSGRVLAT-DSVRTFDRDDGSEGKVANLVLGDPTGRVRVTLWDER-ADLatEF 228
WP_119818000 152 daevdvevldTYRVEDLALGR--SDVDLVGTVLDT-DSVRTFDRDDGSEGKVANITLGDETGRVRVTLWDEQ-ADLadEF 227
WP_121921358 159 dadvdvqvqdTYRIDDLSLGL--SDVNLQGRVLAT-DSVRTFDRDDGSEGRVANLTLGDETGRVRVTLWDEK-ADRaeEL 234
WP_011013165 132 EVGDVIKVLDAQVREsLSGLPELHINFRARIIKNpDDpRVQDippleevrvaTYTRKKISEVEPGDRfVELRGTIAKVYR 211
WP_004044405 227 EPGQSVEVVDGYVRE-RDGSLELHVGSRGAVEPI-DE-DIEY----------VPETTDIGSLELGQT-VDIAGGVIEADG 292
WP_006056307 227 DTDITVEVVDGYVRE-RDGSLELHVGNRGTLEEI-DE-NVEY----------VPETADIASLELGQT-VDIAGGVIETDP 292
WP_014052833 230 DAGEVVEVVDGYVRE-REGDLELHVGSRGTIEEV-DE-DVQF----------VPDTSDIADVEMGDT-VDIAGGIIETDE 295
WP_014555311 229 DPDDSIEIVDGYVRE-QDGALELHVGDRGTIESI-DE-DVEY----------VPDTDPIETVVIDET-ADIAGGVIETDT 294
WP_096390595 229 EAGEVVEVVDGYVRE-RDDDLELHVGNRGSIERV-DE-TVEY----------VPETTDIADLEIGET-VDLAGGVIETDP 294
WP_089671261 236 TADQSVEIVDGYVKE-RDGSLELHVGSRGAVEPL-DE-EIEY----------VPETTDIGSVEIGQT-VDISGGVIEDDG 301
WP_103424198 229 AVGESVEVVDGYVRE-RDGDLELHVGNRGGVEPI-DE-DVEY----------VPETDPIAGLEIGQT-VDVAGGVIELDE 294
WP_119818000 228 DPGETVEVVDGYVRE-RDGDLELHVGSRGDVERV-DE-DVEY----------VPETTDIADLEIDQT-ADIAGGVVETDP 293
WP_121921358 235 DSGTSVEVVDGYVRE-RDGDLELHVGSRGAVEEI-DD-DISY----------DPETDDISSLELGQT-ADLAGGVIETDP 300
WP_011013165 212 -VLVYDacpeckkkvdyDPGmdvwicpEHGEVEpikITIldfgLDDGSGYIRITLFGDDAEEllGVGPEEIAQKLKEMES 290
WP_004044405 293 kRTFDR-----------DDG-------SEGQVR---NIR----VKDGTGDIRVALWGEKADA--DVDLADYVVITDAEIK 345
WP_006056307 293 kRTFDR-----------DDG-------SEGQVR---NIR----VKDDTGDIRVALWGEKADT--DVDLADYVVITDAEIK 345
WP_014052833 296 kRTFDR-----------DDG-------SQGQVR---NVR----VRDETGDIRVALWGGKADR--DIELADRVAFTDVEIQ 348
WP_014555311 295 kRTFDR-----------DDG-------SKGQVR---NVR----IRDDTGDIRVALWGDKADL--DIDLADYVVCTDVEIQ 347
WP_096390595 295 kRTFDR-----------DDG-------SEGQVR---NVR----IRDDTGEIRVALWGEKADA--GIeladevlftdveis 347
WP_089671261 302 kRTFDR-----------DDG-------SEGQVR---NVR----LKDETGDIRVALWGDkadkdieladhvlvtdaeiqdg 356
WP_103424198 295 kRTFDR-----------DDG-------SQGQVR---NVR----IKDDTGDIRVALWGDKADT--EMDLGQYAVFTDVQVK 347
WP_119818000 294 kRTFDR-----------DDG-------SQGQVR---NVR----IKDETGEIRVALWGekadadveladhllvtdaeiqdg 348
WP_121921358 301 kRTFDR-----------DDG-------SEGQVR---NVR----IKDETGDIRVALWGEKADL--DIDLADYVVVTDAEIQ 353
WP_011013165 291 mgmtlkeaarklaeeefyniigkeiivRGnviedrfLGlilraSSWEEV------------------------DYKREIE 346
WP_004044405 346 ---------------------------EG-------WQ-----EDLEASagwrssvavmdeapegaagtdaggSAPTPPs 386
WP_006056307 346 ---------------------------EG-------WQ-----EDLEASagwrstitvmdespagaagtdadaDAGTSAD 386
WP_014052833 349 ---------------------------DG-------WQ-----DELEASagwqstvsllegtadvsggdsgseGGQQEKT 389
WP_014555311 348 ---------------------------EG-------WQ-----DDHEASagwrsavyrlderpedatttvessSNQQQTE 388
WP_096390595 348 dgwqddleasanwrstvsvletgnatdgrrsegstaddptesaekrpesegldafangadgategaraqsdggpaaaaaa 427
WP_089671261 357 wqdeleasagwqstvsilesgvstdksddepteatdreaeaaaaagglsafedggsggasesaataetdanddsestktt 436
WP_103424198 348 ---------------------------Egwqddlecsvnwrstvsvlderpddapthdapaaatatsggsaegqgslssf 400
WP_119818000 349 wqddleasanwrstvtvldeeaaagdataggspageakaaagdapssggglsafadgdatsegttsgdatsegttddetg 428
WP_121921358 354 ---------------------------EG-------WQ-----DDLEASagwratvtvtdppsdapgtdasgsGDTANAG 394
WP_011013165 347 RI-------KRELE 353
WP_004044405 387 d------egLGAFS 394
WP_006056307 387 Sqa----qgLGAFE 396
WP_014052833 390 PAgq---ggLSSFG 400
WP_014555311 389 TGka---sgLDAFA 399
WP_096390595 428 tadasesagtdeat 441
WP_089671261 437 sdsgeiveftgtvv 450
WP_103424198 401 dssagssstsssss 414
WP_119818000 429 eaavettetveftg 442
WP_121921358 395 GVsgsgspgLDAFG 408
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