Conserved Protein Domain Family
YicC

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COG1561: YicC (This model is not part of the current CDD release)
Endoribonuclease YloC, YicC family [Translation, ribosomal structure and biogenesis]
Statistics
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PSSM-Id: 512461
Aligned: 993 rows
Threshold Bit Score: 200.316
Created: 24-Mar-2025
Updated: 26-Mar-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_164922036   1 MTGQGRGETSTAAGSVVTEIRSVNNRGLKIILRTSDSVSEFEPKMEALVR-QHLHRGSVTVQVRFTPPPG-ADLPRINAD 78 
WP_024268971   5 MTGYASREYSSENLTLSIEIKGYNNRYLDPQISLPSTLGRLEQELRDELK-THISRGRVEVYLRLQSGAE-QTRVRIDDS 82 
WP_149569172   4 MTGYGTSEYSDENIRISVDLKAYNNKYLDISLNMPSWLGPLEGRVRDIVKnKRIFRGRIEFNIRIKELVE-NIKINIDET 82 
QJR22638       5 MTGFASAFLTYDDFDIEVEIKSVNSRYFEFRLLGTPLPVEWENEFRQQVF-EVLKRGKIDLLIRVVEKSAkNTRVVVNTE 83 
WP_271435370   5 MTGYARSFVTYEDFDVEIELKSVNSRYFEFRLLGTALPAEWENEFRQQVF-AVLKRGKIDLFMRVVEKSAkNSKVVLNME 83 
WP_014271812   4 MTGYGSAETMNEKFQLSVEIKSYNNRFLDINHNIPFFLSPFEMDIDKAVA-TVASRGHVEVNVRVKSLVS-DMEIVVDTQ 81 
WP_002682397   4 MTGYALTEKTEPNSFISLELKSYNSRYLDLNLNFPFWLSALEPIFRAYFS-EKIARGKVEVSLHVKDADI-DVDILTNTK 81 
WP_014456440   4 MTGYGIQEYQDEQLILSVELKSYNNRYLDITMNMPGMLNPLEEELRTLLK-GTARRGKLELYIRFRRMEQ-DTRVRLDAG 81 
WP_013739527   4 MTGYGFSELHEDDLHVSVEIKAYNNRFLDIVHNIPYFLAPFEQEIDAMVK-DVSSRGRIEVTVRLRQSSE-DLTLEVDKD 81 
WP_149486286   4 MTGYGYKEFQNEKVRFSLEMKSYNNRYLDLILNLPGPLSPLEGQIRALVS-GRLSRGRVEVYLRMKELEE-DLSLAVDKT 81 
WP_164922036  79 VVRSYAEQLAQVADSLA------MgdavtSTNIDLAHLMQMPGVLESPSagsQnrssDEqalAAKWSLVQESIESALDRF 152
WP_024268971  83 QAEALVDAMNQLKRRYR------L-----KNRPSLSDLMAFDGIIKLEKq--R----DQ---EDVLPIIRSTFSQALTEF 142
WP_149569172  83 LVESVVSSLNSVIKKSS------L-----KSEIQLSDILNFEGVIKTDKt--R----DL---EGIWELLSPEIEAVLDQF 142
QJR22638      84 LAKQYLDALRTLSHDLG------I-----PGDITIPHLLSLGPIIEVEKl-dA----D----VTLFERLREVVSDVLQRT 143
WP_271435370  84 LAQQYYEALLSLSKKLG------I-----ATELTLRDLLSLGLIVEVEKl-dA----D----VYLFERLKVILDDVLTKI 143
WP_014271812  82 AVERYRDAFAQIAALSG------K-----ALKPELSDFLAAEGVMTSVRq--G----DS---EMYRQPLFSVLDEALAQF 141
WP_002682397  82 VAKAYAKAMREVAEAAG------I-----NPEIDINRFSEKDGVIIIERn--I----DI---SAWENTLLPIFEETFTKY 141
WP_014456440  82 LLQGYLSALQDARRLSAegdvavA-----ADRLQAADLLSIEGLFSVESs--R----DV---EELRKPLFDAVTAALQQW 147
WP_013739527  82 AVARYADAFSAIAREAG------T-----SFEPTLADFLEREGVLTATRd--T----DV---EVWHPTLFAVLGKALEQF 141
WP_149486286  82 AVMAYAETLREVQALAG------I-----DGDITLEQLLGMEGIIKTDKk--R----DL---EGLYELIESLFQDVLAQL 141
WP_164922036 153 KQMRSDEAIAMAESIEQDMTLIQARCEEIAKRSPQVVARYQERLRERIEKALSen---glSVgDPVDLIREVQLFADRSD 229
WP_024268971 143 NESRQREGESTARDIMEQLQRFGNSFQVIRNEESRIESHINTQLRSRFQEVLGd------RI-EEDRILTELASLLVKHS 215
WP_149569172 143 IFEKEREGILLKEDIFSSLDLITLDLKNITKYIPLVEEKIKNNFREKFTEVLGn------EI-DENRILSELGVLLVKYD 215
QJR22638     144 ENMMRLEGQKTIADIRKSLSIIEKALSLIEQRYPESLARYQQELQKKLVEFASslgestrEI-VQNRILLEVELVSSRVA 222
WP_271435370 144 TEMMRIEGQKTVQDIQQSLGKIQQALEVIETRYPESLSRYQQELQKKLLEFSQslgestlEL-LQNRLLLEMELVASRVA 222
WP_014271812 142 AQSKEREGNSTKADLTAMGKIVEEGLSVVSAHAGELEELVKTNLRNRFEEMLGd-----qNY-DENRILQEVAVMLVKYS 215
WP_002682397 142 DKTRLDEGDVLKKDILSNLDRIYASLKVIKKYAPQMEEIFCQNIKERFTELLGs------EI-NEQRIMQEVAVMLVKYT 214
WP_014456440 148 HAARVREGAATRDNIRAQMQRIQAAYQTVAKRAPELEQRIREMLHERFTELMGd------QI-DLQRVYAETAALLVKYS 220
WP_013739527 142 SRSKEREGEATRRDLERLGTRLTEGLETVETYAEEMERMIRASLTERFNEMLGe-----kGY-DENRFLQEVAVMLVRYS 215
WP_149486286 142 IEARQTEGAETTKDIMGQIDFMEDCVNQITAFAPRMQEQITTNLKEKFDEIVQg------KA-DESRILAEIAIQLVRFD 214
WP_164922036 230 ISEELTRLGSHLGLMRGVLAgdsaetassesgsRG-EAVGRKLDFIIQELNRETNTIGSKAGDAEIAEHVVEIKCAIERM 308
WP_024268971 216 INEEISRLQAHIQQFTDEFN-------------RG-GAVGKRLDFLCQEMNRETNTIGSKNLLKEISAAVIDMKDALENI 281
WP_149569172 216 INEEIVRLKSHIENFK-LSS-------------RE-IPCGKKLDFICQEMNREINTIGSKSPIIEISKLVVNMKNSLEQI 280
QJR22638     223 INEEIVRLRSHLHQFDQIIE-------------GKlPGDGKKLDFISQEMNRETNTIASKSQDYEIIQATIDIKGEIEKI 289
WP_271435370 223 INEEIVRLKSHLHQFLLILE-------------GKlIGDGKKLDFIAQEMNRETNTIASKSQDYEIAQATIEIKGEIEKI 289
WP_014271812 216 VNEEIKRLAVHLKEYFKLLN-------------QN-EPVGKRLDFLCQEMNREINTIGSKSQMVEMNLQVVRMKDGLENI 281
WP_002682397 215 INEEIVRLEAHCNSLSHELK-------------KN-EPIGKKLDFICQEINREINTIGSKNQMIEMAQSIIEVKDALENI 280
WP_014456440 221 VNEELARLGAHIEEFLRLAD-------------SG-GSIGKRMDFLCQEMHREMNTIGSKSALLEISRSVIDMKDALENI 286
WP_013739527 216 INEEIVRLRTHLKEYRSLIA-------------SS-QPVGKRLDFLCQEINREINTIGSKSQLVDVNLRVVDMKACLENI 281
WP_149486286 215 INEELQRLNTHLEGFRNIAA-------------LD-EPVGKKLDFLCQEINREVNTIGSKNTLVEIGRIVVDMKDSLEKV 280
WP_164922036 309 RELVQNLE 316
WP_024268971 282 REQLRNIE 289
WP_149569172 281 REQARNVE 288
QJR22638     290 REHLRNLE 297
WP_271435370 290 REQLRNLE 297
WP_014271812 282 REQIRNIE 289
WP_002682397 281 REQSRNVE 288
WP_014456440 287 REQARNIE 294
WP_013739527 282 REQIRNIE 289
WP_149486286 281 REQLKNVE 288
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