Conserved Protein Domain Family
YceD

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COG1399: YceD (This model is not part of the current CDD release)
23S rRNA accumulation RNA-binding protein YceD (essential in plants) [Translation, ribosomal structure and biogenesis]
Statistics
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PSSM-Id: 512446
Aligned: 942 rows
Threshold Bit Score: 47.6613
Created: 24-Mar-2025
Updated: 26-Mar-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_136918452   4 IKIPVANI-D--TAGRSLEAEL-PVawldEQLa--dDDndLKGaAPGQVTARL--SRSG-TDVVVRGRVKASVRTPCARC 74 
WP_016339058   1 MIYKKADFiN--NPVINFTENLtTIe---N-LsnysPNi-REG-KNLIVVGVIkyNAEL-DIIEVKAKISGELLIEDSRT 71 
WP_025734373   1 --MNPQDFkN--QPKKHLVGQIeNLt---K-IkldnPLi-KEL-IKISYDVKLeyIYDV-DAIEVDGVIECELTAFDAND 69 
WP_023025822   1 --MNKQYFeK--QVHTELTEIInDLe---S-IklnnILv-KKV-KYLDYDIDVdwISSI-ETVAVNGIINFTLDAIDSRT 69 
WP_083540515   3 IKWALNELkKlnGDPLPLSGQV-DLt---KSLkdrnTSi-IDA-EPLLMDGIL--VVENtDEFLVDLNLSISLTLPSARS 74 
WP_040376810   3 IKWALNELrAklHEAIKLEGDLsELi---SSIkdrsDRi-LDI-ADIHINGWL--IVDSeDEFTVDATLTVEMTLPSTRS 75 
WP_062471290   1 MKWTLKEIkEhrDEPVYFSETV-NRe---ASLmkrdNEi-LAV-SDIKATGFL--LYEN-QSVLANFQIDYTITLPSSRS 71 
WP_020862817   3 LIFNQTDFkL--KKHYELQGQLtDLd---Q-IksnnILi-RSF-DFISYDLDLdyNETL-KMITVNGVINYTITGIDSRI 73 
WP_039848829   1 MKISVKQLqDsqGTPTYFDTEI-NVe---EALkqrdDSi-LAV-SPAYIKGFL--VYQS-QSVVAQFTCDVDITLPSSRS 71 
WP_013668711   1 MKWSFQELrIkaQDPLKVDKTL-DLk---DDLmnknQEv-LDL-SPVEVQGYL--IYDD-HTVLAQLEIALTITLPSSRS 71 
WP_136918452  75 LESTNIDVDTELSLLLKAAPgqaaqepgegrhshgkrSHaaikergaaagaaaagaaaagaagkpgatakKPAkeskdkd 154
WP_016339058  72 LKLFLYPIKLDWNDYYSFn------------------------------------------------------------- 90 
WP_025734373  70 GHEFLYSAEIEWNDEYSFd------------------------------------------------------------- 88 
WP_023025822  70 GEEFEYSDSIDWNDEYSFs------------------------------------------------------------- 88 
WP_083540515  75 LEPVKVDLRIPFSETYLAAG-----------------TV-------------------------------VDAek----- 101
WP_040376810  76 LEPVDITYEVALSETYISPG-----------------AN-------------------------------VVGds----- 102
WP_062471290  72 LEPVELALTVPIFETYVEDE-----------------ED-------------------------------IDGf------ 97 
WP_020862817  74 GNEIKYSNYIDWNDEYSFt------------------------------------------------------------- 92 
WP_039848829  72 LEPVVVPLHIDIVERYIPSH-----------------LS-------------------------------VDEk------ 97 
WP_013668711  72 LEPVDVAMQFPIRERYIESG-----------------WQ-------------------------------SELv------ 97 
WP_136918452 155 ppEyEfssEEaDLDTYDGETVVLDDFVREAILLEMPIFPLCSE-ScpGIRPspeagdGGD----TRp------------- 216
WP_016339058  91 -fY-Q---KT-DINYLKEQNFDIIKYAWDEIIINIPINLSENSdT----IIs----gDSSwqvlSEedfesy----lakq 152
WP_025734373  89 -qK-A---ND-QTNLILHNNFDLQAYVIEQINLNIPVNLSEKHaI----IYk----vGSNweflSEndhmkne--eiskd 152
WP_023025822  89 -dS-I---ND-QANIIVGEEFDVQNYVIEQININLPFNLSNNSdI----IKk----tGFGwtimSEeefhqn----eqnk 150
WP_083540515 102 -yG-N---DE-IVVELESDTLDLHKPLEDAVLAAIPTQVFTNEel-eNGDMp----rGSDwkvvSEdaygtgvrerlsee 170
WP_040376810 103 -qA-E---D--MSIELDRDILDLQKPIEDSILISLPTKVLTQDer-eSHIFp----qGDDwqvlEEgnekat----ssmn 166
WP_062471290  98 --D-N---PEdVIIPIENGEIDLVPAIEDMILLSIPVQVLTAEei-aSGRMp----qGESwsvvTEddyeqqrakekeeq 166
WP_020862817  93 -nS-S---DF-NTNIIINEEFNLKDYIIEQINLNIPFNLSLNNdI----LNk----yGLGwsleSEeefqks----qank 154
WP_039848829  98 --E-L---TE-IVMPLDGDWVDLEPAVEDHILLSIPLQVLSQEel-sEDKMp----sGNDwevvTQealeerrkqqkeqs 165
WP_013668711  98 -qD-E---DN-LVIELEDNTVDLGRAIVDNIITHIPLKRLTPDel-eATELp----sGDDwnlmTEasfqnee--kesnq 164
WP_136918452 217 vDPRLAPLGALRAGLE 232
WP_016339058 153 eDSRWNKLQELWEQKI 168
WP_025734373 153 lDPRWEKLNNFKSDK- 167
WP_023025822 151 vDHRWDKLNEFKKK-- 164
WP_083540515 171 eDPRFAALKGFFSEEN 186
WP_040376810 167 eDSPFSALRDLFPEAD 182
WP_062471290 167 dDPRFAGLKALLEDEE 182
WP_020862817 155 iDPRWEQLDNIKIDDN 170
WP_039848829 166 vDPRLASLQSFFEKDE 181
WP_013668711 165 iDPRFAKLKDLLSDDT 180
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