3IEK


Conserved Protein Domain Family
YSH1

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COG1236: YSH1 
RNA processing exonuclease, beta-lactamase fold, Cft2 family [Translation, ribosomal structure and biogenesis]
Statistics
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PSSM-Id: 440849
Aligned: 582 rows
Threshold Bit Score: 183.85
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3IEK_A         1 M---R--IVPf--GaarevtgsahlLla--gGrrVLLDcgmfqgkeearnhapfGfdPkeVDAVLLTHAHLDHVGRLPkl 71 
WP_013419704   1 MihpRewMEVrseG-----------LyckagG--FFID----------------PvrP--VDAAIVTHGHSDHARSGH-- 47 
WP_041693872   1 Mh-pStwLKAddtG-----------LycepgQ--FYID----------------PmnE--VSTALVTHGHADHARAGH-- 46 
WP_014132283   1 M------AQVldrN-----------LhikriD--TYVD----------------PtlP--RERAIITHGHADHARSGH-- 41 
WP_055046245   1 Ma-----SSFldrD-----------LyvrpiD--AYID----------------PpvP--RARAIITHGHADHARSGH-- 42 
WP_066847390   1 Mr-dFgwIRAephG-----------IhvvpcN--AWID----------------PakP--VERALITHGHADHARGGH-- 46 
WP_069049962   1 MssaPhwIEPhphG-----------IfvrpaN--AWID----------------PsrP--VSRALITHGHADHARGGH-- 47 
WP_069708638   1 MprdFswIRPepwG-----------IhvvpaD--CWID----------------ParP--VDRALVTHGHADHARGGH-- 47 
WP_117318230   1 -------MSVaspG-----------LycrpaD--LYID----------------PmeP--VAQAVVTHGHADHARSGH-- 40 
WP_121050855   1 MafrSswIEAhptG-----------IylpsaD--AWID----------------PaaP--VDRAIITHGHSDHARGGH-- 47 
3IEK_A        72 fregyrGPVYATRATVLLMEIVLedalkvmdepffgpEDVeeaLGHLRPLEYGEWLRL-G-A----LSLAFGQAGHLPGS 145
WP_013419704  48 ------AKVAATPDTLAIMACRYg-------------EGF---ACQRVDLPYRQPIHW-G-E----ARVTLYPAGHILGA 99 
WP_041693872  47 ------HSVYASAETLAIMKTRYg-------------DDM---ASQHHAVTLGESVTF-N-D----VKVTFFPAGHILGS 98 
WP_014132283  42 ------GKVLATPDTIAIMKTRYg-------------ADC---AGSFQAASFGEKVRI-D-D----VTITLYPAGHILGS 93 
WP_055046245  43 ------GAVLATPDTIAIMKARYg-------------EDS---ARQFQPLEFDTPLQV-D-D----VTITLKPAGHILGS 94 
WP_066847390  47 ------GEVFATPETLAIMGLRYn-------------TGE-----EGVGVPLREPLDL-GcG----VTASWHPAGHVLGS 97 
WP_069049962  48 ------DAVWATPETLAIINLRYg-------------RYP-----GENAIGYGDALDL-N-G----VKVSFHPAGHVLGS 97 
WP_069708638  48 ------GATFATPETLAIMKLRYa-------------TEE-----GAVPVPYGTRIALpG-K----VHATWIPAGHVLGS 98 
WP_117318230  41 ------QHVYATHQTLAIMTTRYg-------------EEM---AQHTTGVDYAQSVTL-G-EpddpVVMTLYPAGHILGS 96 
WP_121050855  48 ------RAVLATRETLAIMECRYg-------------PQT------GQALAYGEAVRI-G-D----VDLRLVPAGHVLGS 96 
3IEK_A       146 AFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPpLADLVLAEGTYGDRPH--RPYRETVREFLEILEKtlSQGGKVLIPTF 223
WP_013419704 100 AQVLIEHGGARLVVSGDYKRTADPTARPFELV-PCDVFVTEATFGLPVFchPDPQREVEKLLNSLAI--FPQSCHAIGCY 176
WP_041693872  99 TQILIEYAGYRVVVSGDYKRRHDPTCPPFEVV-PCDVLITEATFGLPVFkhPPIEHEIDKLLHSLRV--FPERCHLVGAY 175
WP_014132283  94 AQVLIEQDGQRVVVTGDYKRLPEKTAQPFELV-ACDLLVTEATFGLPVFqhPHPTEEIARLFKSLAA--HPERAHVIGAY 170
WP_055046245  95 AQVLMEHKGHRIVVTGDYKRLPDRTSQPFELA-ECDLLVTEATFGLPVFqhPDPLDEIARLLRSAAA--FPDRAHVIGCY 171
WP_066847390  98 AQILLEHAGERVVVTGDYKRRPDPTCPPFEVV-PCDIFITEATFGLPVFrhPPIEEEIAKLTNALAA--APDRCVAVGAY 174
WP_069049962  98 AQIRMEYQGETVVVTGDFKRRPDPSCAPFELV-PCDIFITEATFGLPVFrhPPTSEEIGKLLAMRDA--HPEGCVLVGAY 174
WP_069708638  99 AQILLEHAGERIIVTGDFKRRADPTCPPFEVT-PCDVLVTEATFGLPVFrhPPVEEEIAKLLSALAA--NPERCVLVGAY 175
WP_117318230  97 AQVLLEYRGARLVISGDYKRRADPTCPPFEIV-PCDVFITEATFGLPVFthPPIEHEVDKLINSLQV--FPHRCHLVGSY 173
WP_121050855  97 AQAVLECRGERVVVSGDYKRRPDPTCAPFEPV-PCDVFVTEATFALPVFrhPPIGDEIGRLLAARQA--QPDRAILIGAY 173
3IEK_A       224 AVERAQEILYVLYTHghrlpRAPIYLdSPMAGRVLSLYPRLvryfseevqahflqgknpFRPAGLEVVEHtEaSKA-Lnr 302
WP_013419704 177 ALGKTQRLIAELRRAg---yDRPIYL-HGALMKLTELYEARg-----------------VALGPYEPVTPa--NRKaL-- 231
WP_041693872 176 ALGKCQRVILALREAg---yEKPIYL-HGAQLKLCDLYEQLg-----------------ISLGALIPVSD-VaDKKaL-- 231
WP_014132283 171 ALGKAQRVIALLRDGg---yDAPIYL-HGAMQRLCDLYVERg-----------------IALGDLRHATDa--TKDdL-- 225
WP_055046245 172 ALGKAQRVIALLRDAg---yDAPIYL-HGAMIRLCELYIARg-----------------IPLGELKPTLGt--SKAeL-- 226
WP_066847390 175 ALGKAQRVIAELRRLg---hHDPIYL-HGALEKMCALYEEHg-----------------ISLGELRPATGa--AKDeM-- 229
WP_069049962 175 ALGKAQRVITELRALg---yDEPIYL-HGALEKMCALYADHg-----------------VAMGPLLPVAGt--DKAdL-- 229
WP_069708638 176 ALGKAQRLIAELRRAg---hQDTIWL-HGAMERMCRLYEEWg-----------------VDLGDLRLVSDa--SKEqL-- 230
WP_117318230 174 ALGKCQRVILALRQAg---yTKPIYL-HGALIRLCQLYQQQg-----------------IELGELIAVND-VeDKAtL-- 229
WP_121050855 174 ALGKAQRVIAELRRHg---yERPLFI-HGALQRLCDLYRELg-----------------VALGELLPISDl--KPAaL-- 228
3IEK_A       303 ApGpMVVLAGSGMLaggrILHHLKHGlsDPRNALVFVGYQPQgglgaeiiArPpavrilgeevPLRASVHTLgGFSGHAG 382
WP_013419704 232 A-G-EIVLCPPLAL----ADRWSRSL--PDVIPAAASGWMQI--------RaR----------AKQQRVELPlIISDHCD 285
WP_041693872 232 A-G-EIVLAPPSAL----ADRWSRSL--PNVRPVMASGWMQI--------RaR----------AKQRNAELPlIISDHCD 285
WP_014132283 226 A-G-AIVIAPPSAL----KDRWSRRL--PDPVLAMASGWMSV--------KqR----------ARQRGIELPlVISDHVD 279
WP_055046245 227 A-G-QIVIAPPSAI----KDRWSRRL--PDPVLAVASGWMSV--------KqR----------ARQSGVELPlVISDHAD 280
WP_066847390 230 R-G-HVVVCPPSAL----NDRWSRRL--PDPITAMASGWMRV--------RqR----------ARQRNVELPlIISDHAD 283
WP_069049962 230 R-G-TIVLAPPSAL----ADRWSRRL--PDPVTSMASGWMRV--------RaR----------AQQRGVELPlIISDHAD 283
WP_069708638 231 T-G-AVIVAPPSAL----NDRWSRRL--PDPITAMASGWMRV--------RqR----------ARQRMVELPlVISDHAD 284
WP_117318230 230 A-G-EIVIAPPSAL----ADRWSRAL--PDVRTVNASGWMQI--------RaR----------ARQKQVELPmIISDHCD 283
WP_121050855 229 A-G-EIVLAPPSAL----NDRWSRRL--PDPITAMASGWMRV--------RqR----------ARQRGVEMPlVISDHAD 282
3IEK_A       383 QDELLDWL--QGeP-RVVLVHGEE 403
WP_013419704 286 WPELIDTIreTG-AeEIWVTHGRE 308
WP_041693872 286 WPELLQTIeeVN-PkEVWVTHGRE 308
WP_014132283 280 WPELTRTVtdTG-AqTIWVTHGRE 302
WP_055046245 281 WNELRQTIaeTR-AgKVWVTHGRE 303
WP_066847390 284 WDELTATIqeVD-PqESWITHGRE 306
WP_069049962 284 WDELTTTIreVA-PkQVWVTHGRE 306
WP_069708638 285 WDELTQTVvdVN-PaETWITHGRE 307
WP_117318230 284 WPELIQTIeeVN-PaEVWVTHGRE 306
WP_121050855 283 WDELTATIreIA-PgEVWVTHGRE 305
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