Conserved Protein Domain Family
RqcU

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COG1193: RqcU (This model is not part of the current CDD release)
Bacterial ribosome collision sensor RqcU, MutS2 ATPase family [Translation, ribosomal structure and biogenesis]
Bacterial ribosome collision sensor RqcU, MutS2 ATPase family; is part of the Pathway/BioSystem: Translation factors
Statistics
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PSSM-Id: 512435
Aligned: 754 rows
Threshold Bit Score: 406.044
Created: 24-Mar-2025
Updated: 26-Mar-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_224343335   2 IQ-----AETLE----LLEWSRLCQYLSTFAATKLGAIAAR-H-L---KI-PATLDETQNLLAQTQEVYQLEnRLTR--- 63 
WP_013756111   1 MS--------FKfdadDLDYKDVLKIICKKAFLPFVKENIL-N-I---KPl--EIFELKIRQKCINDAINIIw------- 58 
WP_013681509   1 M------KDTLE----ILQYNKLKDLIQKHIQTEYGKEQLK-K-L---KP-IFDIELAKSNFQMLNEFFEHF-TKWG--- 60 
WP_014242833   3 LNlldnnSSFLE----YLDWDEILIKLSSHSYFQHTKDVVP-R-LlnyKP----NQIINRDLTYLDLYNDDF-ESFNtsl 71 
WP_013010451   1 MIh-------LE----TLEFGLFKEYMMRGFTSSFSKKRLE-A-L---KP-YYALEKIEKYKNELSEAIGYV-RNSD--- 59 
WP_128466494   1 MT-----DSHIE----SLEFPLFRQYLRGSFISSLSAAVLE-K-L---EP-FGDYGTVKMRQDVMEEALSLV-KSIN--- 61 
WP_014295759   1 MN-----SKTYK----DLEIDKILNLISSKASSRYGKRYILeE-F---EY-FQDYEKIEEEYKIIDEINNYI-YEYG--- 62 
WP_102241918   3 LNllngnSEALE----LLDWSMLVSSISSLSHFELTKTKLE-A-----PPaARSIAMIQGDLNLLESYLANY-DDYSlsf 71 
WP_109604452   1 MK-----KEFL-----DLELNKTLEKISEYTHTKYGKDYLK-NeI---KF-YDDYKILKREIEISRSFFILY-QQGF--- 61 
WP_155811060   1 ML-----EKTYK----DLEIEKILNLISTYSHTDYGKGYFSkN-V---KM-YKDLTELDREVNISRVFFDMA-IKGT--- 62 
WP_224343335  64 -G-LS-FDGISDI--GASLERAGS-KGIL--------SGEELFAIATTLAGARTLRRVIDD-H--P-DL--PVLNEL-VE 122
WP_013756111  59 -Ky-------SDP--RERLQEIAI-DSLVnyknhlpfSFKNYFGLLLFLKAVSSIREFFLK-Te--lNF--NFFYDS-SL 121
WP_013681509  61 -A-LVl----DDVfiKSIIEDSF--NGML--------DEKELKSIGNFISLLLYIKEEIEQ-Nn-------PELYEE-YI 115
WP_014242833  72 gDiFStLPRTDEL--EKHLASIEK-DLVL--------DLSELNTICKLLEGYPSVERLFEHfn-iDhNY--P-DQSI-KS 135
WP_013010451  60 ---MH-IPADYEF--IALYPRFDDpLLFL--------EPEELIVFSHFFKNVKEIKKSLID-A----GV--SALKVY-LS 117
WP_128466494  62 ---IS-IQRDEDY--LAVYPRINDpLAFF--------EPQELMEIRKFLLSAAALKTALID-A----GA--VHMKAY-LK 119
WP_014295759  63 -E-FD-IRGIPII--YDEIKKVEN-GTYL--------DPIEYKRIADFLSQTQNLYKEnRK-Nl--iKY--THLQDL-IF 122
WP_102241918  72 nSkLRlLPESETF--FKLIPDIKR-EKFF--------EARELHFLAQIAECYIECLPLFSNlVfeE-NY--A-IERDkLS 136
WP_109604452  62 ---LD-LRGTDYI--KEIIENIKN-NLNI--------EIRDYRIIANFHSK---IKIFIKE-Nk-N--YldPITEEI-LS 118
WP_155811060  63 -L-KD-LYGLSYI--PSIIEKIGN-KESV--------EGREFRKIGEFLQDGYAIHKHYNG-In-D--L----LTDK-IS 119
WP_224343335 123 DLRTYPELEQEIHRCIDERGQVTDRATPKLSNIREQQRQLRDRVYNTLQNILQRK--ANAVQEQLITQREGRFVIPVKAP 200
WP_013756111 122 KLNFPQKFFNLLINIFDDEGNIKDSASEKLGEIRKNIKKLEKELNSLLNDYIRGEn-KKYFQESIILERNGFYLLPVKIE 200
WP_013681509 116 NFDIPLSLLDEINKTIDDYGFLKDSATAHLFEIRQQKQQISQNITRILKNLMHGRl-RDILLDTAIFLKRSRYTLLLKPN 194
WP_014242833 136 KIR--NKFINKFRNLVSKDGSESLENHPQLSPLYRELRELEKGLRNSINISARKEtyKKVLQHSEYDVINDRYVLAIRSD 213
WP_013010451 118 DIYTLSEITDDIDDTVNDKGEIKDSASVKLLNVRTELKTVRKQIQKELSGVFAHSssTKFIQENVITERSGRFTIPCKTN 197
WP_128466494 120 GMSALTDITAAIGEVLNDKGDIRDDASARLREIRNELQSVRKKIHNALNSVLYSLnaEKFIQELVITERSGRFTLPCKSN 199
WP_014295759 123 SIPETDNFIDIVYKAIDEDGNVKDSASDLLRRIRKRIENNKKSISVTLRRIIGKY--QKYVSIQQPTVKNNRYCIVIRSE 200
WP_102241918 137 KIK--RYFTNPLRDFVDHSGSVSYERHPVLKKLYAEVLALENDLRITVQKAAKSDlySSKLQLDNFDIINDRYVLAVRSD 214
WP_109604452 119 KLNPMDEFVNYIYGIINEDDQIDDNATSTLSSIRKNLNKTKSRIIQNYNKLKNQy--SKYLSLDQPIYKNGRLCLCVSST 196
WP_155811060 120 DYKPLLELKDQIFKVFTPEGEIKDNASIELKRIRNGIDTVKRQLNIEFNKIKSKy--IKYLSLDQPVERNGRLCIALKSE 197
WP_224343335 201 QKDAIPGIVHDTSMSGATLYVEPQATVNLNNQLRQLQRQEEAEAEAVRQALSEQVAAVKDDLERLMAIATTLDLATARAR 280
WP_013756111 201 YLDKIPGTIRDTSASGLTAYVEPYISAQIVSKIRLKREEELNELKLILKNLDKNFSDNKAIIQECVDFYETVDFFFSLGI 280
WP_013681509 195 YKEYISGRIIDIGKSG-GFFVEPDAVFKENSHLEDITAQEEAERRRILTNLTHQVRENANRLRHNEKKLGVFDVIVAKYH 273
WP_014242833 214 SYNSKLGVIIAKSSTGMTLFVEPYELREKSNQRIQIMAQIDAIINEICRNFCTTLLEFERAPLNELHYLYKIDLIKTKAN 293
WP_013010451 198 FKQYIQGIVHDRSASGQTLFVEPSNTVGMNNTQQELLAAEREESVRILKELSVRIFESLYEINTTIEAYTELAFHLETAK 277
WP_128466494 200 FRQYIDGIVHDRSASGQTLFVEPESTVSMNNTHHELKAEERKEIFRILSSIIRSIYEKRREIRSTTENYGEVAFLLETAR 279
WP_014295759 201 YKNKINGSIIAYSDRGVSVYIEPYEVGKLNAELSDLFAQEKAEISRILGEIYLKLVKILPKVKKTISIVEYIDSLQARIK 280
WP_102241918 215 SYNSDLGPIVARSQSGMTLFVEPYEVREKGNKRIHLLSEIESTILKLTIELSKVVHSYSDEFKLMSEWSLALDWLNTKAT 294
WP_109604452 197 YRRNVNGIVVGRSDSGNSLYIEPSIIAQLNEEIIILENEEKAEISRILSELRFKINKKMKTIENNIFWISYIDYQITKTR 276
WP_155811060 198 SRNVIKGITVGRSDSGATLFVEPDTIIELNEKLTDLFSQEKNEINRILSNLTFELQKNKFKIEKNIEIIEYIDANIAKAR 277
WP_224343335 281 YSLWLEANPPRFVEwgekqrdegggrgdekknssliphssslsT-EPIVLRRLRHPLLVwqhqheqGKSVVPIDLVIQPH 359
WP_013756111 281 YAKENNCIKPEYVD-----------------------------E-MVIDFKNAKHPLL---------KNPIGQDFLLNKN 321
WP_013681509 274 YSKNLPECDIEFSS-----------------------------D-PIIKAKRAKHPILAa-----iKEKTIPVDIDLSTN 318
WP_014242833 294 FSAELGLKRPQLNE-----------------------------S-KEVYIKDFFHPLI---------ENCVLNTLHLDPL 334
WP_013010451 278 FYKGKPYVFPEFTD--------------------------------SIEFRNIHHPVIYle----kGEESVPLDFSLSSA 321
WP_128466494 280 FYKPKPHCMPVFGD--------------------------------VLEFDRVHHPIILle----kKGESVPLNIRMEKG 323
WP_014295759 281 YAKENRYVFSKPEK-----------------------------NkKYIYLSDIRHPLIE-------KEKVVPVTLKLPKD 324
WP_102241918 295 YTQKLGLSKPTLNE-----------------------------K-FYFEFNGLYHPLL---------KAPIKNNVLLDSG 335
WP_109604452 277 YALDNYGDFFLPSE-----------------------------KtRNIKFSELKHPLIS-------KNDMIPINIDLKK- 319
WP_155811060 278 YAKDMNAVFTLPHT-----------------------------T-KKILLKELKHPLIP-------KEKIVPIDVELDK- 319
WP_224343335 360 IRVVAITGPNTGGKTVTLKTLGLAILMAKVGLFIPAREPVELPWFDQVLADIGDEQSLQQSLSTFSGHIRRISRILTALE 439
WP_013756111 322 LRGFILTGPNGGGKSVALKNLGLNVFLALSGLFVHAS-SAKIGPFKGLYSDLCDIQDLSLGLSSFTYHIDRLKHFLENDL 400
WP_013681509 319 -RKLIITGPNTGGKTVFLKTIGLLIVGIFSAIPPNAE-QLTIGSFDNVFAIIGDEQDIFESLSGFSSKIVAFREAFKKAT 396
WP_014242833 335 TKGLIISGPNTGGKTVTLKSVTLCYLLAAMGLYVPAG-ECNIFLPDGIYYFSHDQQDLSSGLSSFASEAKNYLQLLDEIS 413
WP_013010451 322 ELTAVVTGPNTGGKTAALKSIGLNHVLGKCGLPLIGK-SARLVNFKNILADIGDKQSLVMDLSTFSAHMVNIRDIIKKAD 400
WP_128466494 324 ERIGVISGPNTGGKTAALKSMGLNHIIASCGLPLMG-KSAKLYSVKKVLADIGDHQSLVMDLSTFSSHMVNIRDIINAAD 402
WP_014295759 325 KSGMIITGPNTGGKTVVLKSVGISVVFSHAVYPVPA-EMANIPYITNIFTDIGDEQSIEQTLSTFSSHLKNIKNILDNAH 403
WP_102241918 336 HKGLIISGPNTGGKTVALKSITLSLLMVHLGLYVPAV-HADIHPVSDLFYFSHDHQNLSEGLSSFASESKYYLELLQSLG 414
WP_109604452 320 -NGIIITGPNTGGKTVTLKSIGLAFIMAHMSLPVLSV-KAEMPFIKNIFTDIGDEQSISQNLSTFSSHLKNLKIILEEAD 397
WP_155811060 320 -NGMIITGPNTGGKTVSLKSIGLAFFMAHSALPVLAL-KAEIPFIEEIYTDIGDQQDISQNLSTFSAHLLNLKNILESVS 397
WP_224343335 440 ggsqesgvrsqkvegagdrgdggdgeggedagtrrcgdtetmereqrinsspsslpqdspnppphplhptlnpnlklktq 519
WP_013756111     --------------------------------------------------------------------------------    
WP_013681509     --------------------------------------------------------------------------------    
WP_014242833     --------------------------------------------------------------------------------    
WP_013010451     --------------------------------------------------------------------------------    
WP_128466494     --------------------------------------------------------------------------------    
WP_014295759     --------------------------------------------------------------------------------    
WP_102241918     --------------------------------------------------------------------------------    
WP_109604452     --------------------------------------------------------------------------------    
WP_155811060     --------------------------------------------------------------------------------    
WP_224343335 520 nssptPLSLVLLDEVGAGTDPSEGSALAIALLKYLAEH-AGLTVATTHFGELKALKYEDERFENASVEFDDVSLSPTYRL 598
WP_013756111 401 -----KNVIILIDELGSGTDPKEGYALAKSIIKYLLTK-GAFVCITTHIAELKITNIEGFQIAIGAMEYDKNSNLPTYRL 474
WP_013681509 397 -----SNTMMLIDEIGSGTSPDEGEAVAYSIIKNTAKK--CPVCATTHYKKLA-YILESEGFRVAAFEFNTKTLKPTYKL 468
WP_014242833 414 -----ENSLIVVDEIFNSTSSEEASALAISFLEQIHSRsNSLVIISTHHQFFKTYIHASKEYISSHVGFDMETSKPTYKL 488
WP_013010451 401 -----SDTLVLLDEAGTGTEPQEGAALAVAVCTTLADK-RTKSVVTTHFGEMKNYALSTDSALIYAVDFDYKDFSPKYRL 474
WP_128466494 403 -----EKSLVLMDELGTGTEPREGAAIAVAVCESLAEK-GAVTFITTHFAEIKNFALSRTDSAIFAVEFDYKTFEPKYSL 476
WP_014295759 404 -----EKTLVLIDELGTGTDPIEGSALAIAIIEKLLEL-NSTFFITSHLSAVKMYSIENERLLSASMGFDKNTLSPTYRL 477
WP_102241918 415 -----PLNLIIIDEIFNSTSSEEASALAIAFLDEVHRRsNSKVVLSTHHQVLKTFMHSRGDYVSAHVGYDFDLNRPTYKL 489
WP_109604452 398 -----EKSIVIIDELGTGTDPIEGAALGISIIKNLIEK-NSLIFITSHLSEIKTYSLNQENLISASMSFDINSLKPTYVL 471
WP_155811060 398 -----EKSLVLIDELGTGTDPIEGAALSKAILKYLLMK-GPIIFATSHLSEIKTFSLEEEKLLAASMSFDIETLKPTYKL 471
WP_224343335 599 LWGIPGRSNALAI----AGRLGLSQEIVQQAQSYVGGASEDVNQVIAGLEAQRRRQETKSQEAAELLESAERLHRQVAQK 674
WP_013756111 475 VWNSVGNSHALDV----AKKMGLPLEIISDAKEYLIGDRVYNE--MIKLNELTEFYYKKVEELNNKEKILENERKFLKEK 548
WP_013681509 469 TYDRIGKSYGIEI----LKTLNVDKQITNEAHEFYSNQASIFNKLEGQLQKTIEHYTKAKNALAKTKERYINLIENEKKE 544
WP_014242833 489 NYGSPGSSMAFKIfdilAEKFGLSNTISSKAEHILDKKQLSYEQLLQELSQKKSELDKKLIENRQLNINLKNQKKSMD-- 566
WP_013010451 475 LKGVTGKSDPLVI----ARRLNFPEDVVRLASSMIDKKKSQADLSVEEISRMQADLEGRLKDYEERMASLQELEQRYKEK 550
WP_128466494 477 QKGIAGKSDPLVI----SKRLGFPEAVVRRAEELIEEAKNSLEIGIEEVNRLKSELIKEKETYRGRRLELLERQAVFEEK 552
WP_014295759 478 LIGVPGASHAIDI----AERLGLPHDVLVKANNFLSKEQVYDEKIIENLSQIYEELEKEKELHKQKHKEVIQLQRNLEEQ 553
WP_102241918 490 ILGEPGSSLAFKIfenlSEKFGLKTGISERAKDLLDKKQVTYETLLQELSQKKIDLDKLLAQNRTLNIELKNQKSSME-- 567
WP_109604452 472 QVGVPGASHAIEI----AQRMGFPDEVIEQAKNNLGNEYKQTENVYKELGDIYSEIEQARKLKNEELKELSKLKEEYEEK 547
WP_155811060 472 IVGVPGASHAIEI----AERLGIDPKIIEESKINLNEEFSQSEKILSRLTSIHNEYEESLERIKKKEEEIDKTKKEYEEK 547
WP_224343335 675 AATLQERERSLQLAQEQAVQEAIAQAKREIAQVIRQLQQGPMTAQ--AAQQ----ATDELNQIS----ARq--L--P-SR 739
WP_013756111 549 FEQLERDMKEQYEEKISQLNKLLSSVNLVAKELKRNLNQPKKDLvl--------eSLKKWEELSslinEKv--L----KR 614
WP_013681509 545 KEELIQKLKEEQYQKQKEYEKLLESLKNEISQLLK-TKNis-------------kAHKKINQIK----QQsknLf-KdEK 605
WP_014242833 567 -GLVLLEKERITSEYKKKLDKIISQA----ENLLVETKKGKIDSRkqFEKKvi-nLTDSIPDPKk---QK---FneRvKQ 634
WP_013010451 551 EERLKERLAKKETELLEDTVRMYNRAKRLA-----E-----------KPQKvkesVEEEIKRAS----DK---Lv-KtKK 606
WP_128466494 553 EKALKQRLDKKETELLEEAMRLFERAKRLA-----G--EKQG-----KIDKt--eALEGMEKSA----EK---Lt-VlK- 609
WP_014295759 554 LEIIKKRELEKIDEEIKEYKEYLKNLKKDVENYISILKNEKNID---KIKD----LNKKIEKKK----RE---Le-KtKI 618
WP_102241918 568 -GTLYLERERIITDYTKKIKSLFDQA----ETLLSDVKSGKMANRrtLNNEig-gIQSALIREAp---EKkn---kEdPE 635
WP_109604452 548 YEKVKNKEIEKIDKEIKNSKQILKETKNEIEKILSNIKKYKEK----DYQEvk-nKLKEIEKMN----EN---Ln-KiGK 614
WP_155811060 548 LQKLKKKEIESLEPELYQLKEQIKNMRNQIQTVLKEIKQKKDQI---DSQEis-kKLKESENMA----SQ---Le-EmRK 615
WP_224343335 740 Q-Q----KP--K-PKP-GfQpQVGDRIRIP-RLGQTAEVLTAPneDNELTVRF--G-LMKMTVALADI--E-Sldgekal 803
WP_013756111 615 E-------E--T-SKD-KiEiNIGDYVNIS-TMNISGKVIKKQ--GKRSLVQT--D-KSKIWVDNSLLvfdknesdkkls 677
WP_013681509 606 -----------Q-KQEvPl-fRVGEAVLFN---GLKGTITSIK--SDKATVEIe-G--KLLNVKLSSL--S-Kiehkkee 661
WP_014242833 635 Tt-----AE--K-KISi-dQlKENDYVFSP-TFNKNLKIVSINqrKKEVQVLN--G-KMSLWMSIKNL--TwPtnkqppk 699
WP_013010451 607 -----------Ki-KPv-eGiRAGDLIHLE-RYGKNAKILEVE--GNSARMDI--G-GMKISMKLSEIvgK-Kvtdseki 666
WP_128466494 610 KkL-----------KP-VrDiQVGDIIFLE-KYEKSGKITAIE--GSTVSLDL--G-GLKIKMKRADIigK-Klqeeerv 670
WP_014295759 619 K------NN--N-KKN-EnNiNIGDVVLIG---GEKAKVIKIl--KDKIQVKFieK-PFELTVSPDEI--Klekskdekn 680
WP_102241918 636 Ni-----YAhmR-PIEf-eEiKTNDTVFSV-VIRKNVKVLNTNprKKEIQIQH--G-ALSVWVSPSTL--RyPsgskppa 702
WP_109604452 615 -------KE--KiENK-KySfK-ENMIVLApG-NNKAKIVKIE--KNKARLKFf-NlPVEMTYDLNEL--K-Pikkeeks 676
WP_155811060 616 A-LsqnqKG--R-KIE-KsKiKVGMKVKAS-N-NIQGTVKRIT--NSKITVQId-GsPIEITYSPTEI--E-Piinsdke 682
WP_224343335 804 stqagkgvrsqeetqnsk------------------------------lkpqtaapetptptphpsyshlaqyP 847
WP_013756111 678 keysntfsvlsnlknmgpnveisvrglraeeaiqrvekfidkslisnvpyvrivhgkgegilrkiiheilekhP 751
WP_013681509 662 kqikvntklsdvslelnligkrrdeayfdl------vkfidslslqsiktarivhgigngilkdmvretlkqlP 729
WP_014242833 700 qsiqvnftksvsgkleidgrgmrlddfqrlv-----edsihelingdipflniihghgegilkkwlrtflksyT 768
WP_013010451 667 qqdvrvskevqtegrselvlvgkrveegldl----ldrklddsllaghsklfvvhgrgsgqlrkavheylrtdQ 736
WP_128466494 671 rdvklstdaapavrreillvgrrveeaidel-----dkfmdesllsgfdkiyivhgrgtgqlrrglheymrndR 739
WP_014295759 681 knqknsmhipvlkpikneidirgytvedaip---eiekfisdliasnmkggyiihgkgtgklamgiwaylrknR 751
WP_102241918 703 pkvsiniqksvrgeievdcrgmrleefqkia-----eqsidevitgeipfvtiihghgdgvlknwlrsylrkeH 771
WP_109604452 677 keytssistnvktfkpeidirgytvldaipe----ienlisdlltyrmehgyiihgkgtgklaegiweylrkcK 746
WP_155811060 683 kseekriyvkidqkksvkseldirgytvneaip-eiekfisdlissgikegriihgkgtgklamgiwdylrksS 755
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