Conserved Protein Domain Family
TnpB

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COG0675: TnpB (This model is not part of the current CDD release)
RNA-guided endonuclease of RuvC-like superfamily, non-autonomous transposon IS1341, or accessory protein of IS605 and IS607 transposable elements [Mobilome: prophages, transposons]
Statistics
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PSSM-Id: 512419
Aligned: 746 rows
Threshold Bit Score: 89.2229
Created: 24-Mar-2025
Updated: 26-Mar-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_013075289 107 PTELRRAAINQAIGKVR-SWWSHLKTweettpdrrmrepqlgapnepvtfyaGMVEHP--AY-------------DLN-P 169
WP_048831345  70 YSKVLQGTLKCLDNDYR-SFFNlrknk---------------------dvkaRPPGFK--GKkyfttm------------ 113
WP_013195202  71 YSKTCQGVLQKLDANYK-SFFglrkn---------------------gdknaKPPRFK--KSvyffti---pynqsGF-K 122
WP_015617911  74 YSLVAQEVLRLVNKDYR-SFWGRLKNqrlng----------------devtaRPPWFK--SAlkyftl------------ 122
WP_013077074  80 YSSVLKNAALRLSGA-IrKYQKARREkga--------------------ssvGWPKFR--SWkrewfslqydepwKGY-R 135
WP_013809499  74 HSSPLKNVALRLKDAYMrSFkq----------------------------gnGLPKFRawKKkwfsll--ydepnKGF-R 122
WP_241421717  70 SSQVLQEVVKSLNANWQ-MYFTKHKKgdp---------------------gvKPPRFK--SYkyfftq-kypqqgVSF-E 123
WP_218282259  81 YAKYLHAVCMDLAVDYD-NCVKKRSRge----------------------ktRLPRYK--DKdyfyp----lktpKQYvK 131
WP_070391746 104 PYQIKSIAIKDACTAVR-EAKKKYKKts----------------------qiTRVRFR--SRknpiqs--cyipkSAV-S 155
WP_062263198  76 YSKVLQTTLKSLDDNFK-SFFAlrqng---------------------dedaNPPGFK--GKdhfctl---rynqsGF-A 127
WP_013075289 170 QkKKrHTfISLK------LHt------------------------G--Qkwe-kvsLP------Vvvharaeallagsal 210
WP_048831345 114 iynqsG--FEISdtkgniLVsksmdtrihkqeveysdvdkifiglS--HkhpsgipLI------Fe-------------- 169
WP_013195202 123 Ie-N-GK-IIFS------------------------------------Hkyn-nrpIS------Fn-------------- 142
WP_015617911 123 pyiqsG--FELDge--ylVVsgg--------------------meS--YktskgktKR------Rq-------------- 156
WP_013077074 136 Le-G-RK-PEVS------LGkvl--------------------deGtgKe------kQaqvtahLa-------------- 166
WP_013809499 123 In---GReLKLS------LGtn---------------------keGk-Rl-----yIT------Laleda---------- 150
WP_241421717 124 Ih--cGi-LRLAy--------------------------------GknKss----wIE------I--------------- 143
WP_218282259 132 Ik-E-DR-IKLGf----------------------------------yE-------IK------V--------------- 146
WP_070391746 156 ---E-TG--IYHt----kL--------------------------G--K-------LT------Y--------------- 169
WP_062263198 128 I-AG-GR-IRFS------------------------------------Hfyn-evpLE------Fdlp------------ 149
WP_013075289 211 ekeriarerkrskatqagsgEEK---GDR----Tw-V-AKSLTVYgkrdkR--YP-GGvR-YAIHIPMEK---SVDkprk 274
WP_048831345 170 -------------------lPATlleERIfs-tAt-D-IVQISVY-----Q--K--DN-D-FYISITYEIp--AVK---- 210
WP_013195202 143 -------------------iPQEl--ENY-------D-VKHTEIFns-epY--Kg-KG-D-FFVSVVYETf-pQTN---- 182
WP_015617911 157 -------------------yKERikiEGYrn-lPd-N-IHSLTIS-----Y--E--KG-K-YYANLVYEItpaKLG---- 199
WP_013077074 167 --------------------------EPlpdwfEpgM-VRQLRIV-----K--EG----KlFYAVFTVRR---PV----- 200
WP_013809499 151 -----------------------------paspEs-T-IKNLRIT-----K--D--HK-A-YYAVFCIEK---PDKk--- 182
WP_241421717 144 --------------------KLPq--REY----Df-QaVKNVVVS-----YdqR--DK-K-WYVSLNRHV---QL----- 179
WP_218282259 147 --------------------DVNei---------ptN-YGEVwIV-----K--A--RN-K-YLISVSYEA---NKK---- 178
WP_070391746 170 ----------------------A---EDlpv------diCDCRLT-----S--N--NG-D-YYLVVPhKV---AVS---- 200
WP_062263198 150 ------------------------evQTFl------N-VKQVDLF-----Y--DDlKK-V-YYVSIVHEVq-pDQK---- 184
WP_013075289 275 aeeqrrAnp--qmPVVAVDLGVGR-LAV--MgafvE-G--RLA-----ATRF--VDgRAl---NPRR---HRLLTA---- 329
WP_048831345 211 ------Hsn--ndCYLAIDIGTIKqT-M--Vn--sY-G--QFNe----lVN----R-RPdkywEPKI---QQIQSR---- 258
WP_013195202 183 ------Ykd--neKNQAIDLGITKtITA--Vn--tD-G--KILei-tnP--------RFdkywDKKI---NQAKSR---- 231
WP_015617911 200 ------Ser--plKVVAFDPGVKTfLTG--At--dS-G--CLIe----vHST--VN-RStryfDKEI---DLVKSK---- 250
WP_013077074 201 ------ParrpvgRVIAIDPNHKNlGYGvgT----D-GvaTEIq---nP-WF--LK-IL----DRRIdelKSLRDR---- 254
WP_013809499 183 ------Pak--rlKWIALDPNHKNlMVG--In--qD-G----Vsy---eFKN--LT-QIky-wDKVI---DRLKSKrdvc 235
WP_241421717 180 ------PekrvnaHTIYFDPGCKmtLTGikT----DyS---VVeydinP-----LR-ELn--lKHYLl-iDHLKSL---- 233
WP_218282259 179 ------Enn--nnNILAIDLGISKfATG--In--qN-G--EVIei-inP-RYd--Ky-----wNKKI---DKVRSM---- 227
WP_070391746 201 ------Yten-qgRVVALDPGVRTfITF--F----S-E--TSVgki-ghGDFsrIQ-RL----CQHL---DNLLSK---- 251
WP_062263198 185 ------Yvd--ngFYQAWDLGVTKhVAVn-----tS-G--KFLe----vRNA-----RPdrywNPKI---DAVQAR---- 232
WP_013075289 330 IHRKrkqs------------grlQPGVQDNANLWNKIRNLDENAAKQTAVAIVRFArehgaRVIVFEH--LRr-Y----R 390
WP_048831345 259 RDHCkkns------------rkwKRLHNNLGRMKRKSSNQLKDNQHKITRNIVENTd---aNTIIIGK--LD--V----K 315
WP_013195202 232 RDHCkkys------------hrwFRINDAIRVMTKKKNNQIKDWQHKLSRKMVDNTr---lNTIIVGD--LD--V----K 288
WP_015617911 251 LDRCkkgs------------rrwRRLKKALSTLYQRRAGQINGTLHA-TAKLLANSr---hDIISVGS--PN--K----L 306
WP_013077074 255 CKRKsvrvvredgteawlpsrrwRKLNERLDELWRVRREQTKTYLRTVANRLYREY-----DGVFVGD--YTp------H 321
WP_013809499 236 LRKAkfietyegr-gywqpskrwLRINKALDKAYNARREQIKQGLYAIANRLAKTY-----DLVLMGD--YTptL----- 302
WP_241421717 234 RDTKqkhs------------grwRRLNKKISGLYSKIRTQTKHYLHKLANQILQDHp----------DtnFK--IgnwnK 289
WP_218282259 228 RDTKkkgs------------gryKKLTKALKRLYEKRRKQQEHFIHTITKYLVLNN-----KELILGD--LSq------E 282
WP_070391746 252 ISKAkrg--------------qkRRMRKAARRMVIKIQNLINELHHKTARFLVDNF-----DVILLPT--FE--T----S 304
WP_062263198 233 RDHCkkks------------rkwQRLNRAKRTMERKRSNQLNDFQHKLSRNLVENTr---aATILVGD--LS--V----K 289
WP_013075289 391 ppkEKmSRsg--------rKNHKR-AY-WLRGQIMKWVRDLAFREGILTVERNPAYTSQVCPHCKVLGERkg--prFTCK 458
WP_048831345 316 ---QM-ASskpktskkdrsTNRGT-HNsGHIGRFAQFLTYKAESLGKRVIRIDESYTSKKCCVCGTIKNMsl--ndRTYE 388
WP_013195202 289 ---DM-TNskklpksrqksLNRST-QNnGYISRFIEFLTYKSEFAGKQLTKIDESYTSKICYVCGKVHDMpl--ykRNLS 361
WP_015617911 307 ---GM-VSsdpakgkgnqrINRAV-QNnWPHKKFLGYLGYKTESRGKYTHKADERYSTQTCSNCGNRQKLkp--tiRTYK 379
WP_013077074 322 ---GG-GIsr--------gMRRAM-NNqSLIGRFKKTLKWTATRSGKVYGEWDEDGSTRSCHACHYEVPGgippevREWT 388
WP_013809499 303 ---ET-AKyd--------nMHRSMlNR-TAIAKARKIIAWVMEKSGKHFKEVAEEGTTKTCSFCGHEEKKdp--tvRVFT 367
WP_241421717 290 ---GQtLAatgiv-ivdkrINRQVqNN-NPVKKLIGYLRYKAIMNAQQVEEFDERGTTRTCSGCGSQQQMpp--nkRVYL 362
WP_218282259 283 ---QM-IKksn-----ltkLNRSIkEN-WGLGKFKTFLTYKAKLHDVKVVYINEAYTSKTCSNCGNRKSMel--skRVYK 350
WP_070391746 305 ---KM-SKkgnrk--irskTVRNM-LT-FAHYRFKEFLKHKTQETGKTVVDVCEAYTSKTVSWTGEL-VNig--gsKTIK 373
WP_062263198 290 ---QM-PKskqa----tpgLNRAT-QNaGHLSRFIGFLTYKAALAGKRVIKVDEQYTTKTCCVCGAVHEMpl--wkRVMD 358
WP_013075289 459 NpNHRYSADADFVGMMNLYRK-------Wtktfvy---------------------------------prrgdDPKP 495
WP_048831345 389 CsYCGNILDRDCNSSVNILLR-------Yfkhnalwtsy---------------------------qniidnlrqTG 431
WP_013195202 362 C-DCGNEIDRDKNSAINIMIR-------Ylsqnaiwtgy---------------------------rqfacnlrqtG 403
WP_015617911 380 CpKCTMVLGRDDNAAINLLnnlltsfyrp----------------------------------kvnyrdyrkkIYSR 422
WP_013077074 389 CpECGTHHIRDENSATNGLEQ-------VlnnlevpgsgrlgdkivvttrrawrfdglgiqeipgivggrvgdHAAG 458
WP_013809499 368 CpNCQTTLSRDINSAINIAKKenllpclGyvedlsrttytvawdytrcdlmvqmn---------------------- 422
WP_241421717 363 CpKCGFKVERDINTVLNFLKNdnyamwhGlgevlsivsyrfnpvt------------ganqriesrsvilnyqDARG 427
WP_218282259 351 C-MCGMTLDRDINSSINIFNKhnk--nkAlnykninq-------------------------------vttlhfhfG 393
WP_070391746 374 SkVDGFVMDRDINGARGIFLR-------Algdtpwlr----------------------------kqlalvsqNPPL 415
WP_062263198 359 Ca-CGNCIDRDHNSAVNIMVR-------Flsqnalwagyrqfagnlrqtgpripvvpghsqeapcasgg-------- 419
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