Conserved Protein Domain Family
YciV

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COG0613: YciV (This model is not part of the current CDD release)
5'-3' exoribonuclease/diribonuclease TrpH/YciV (RNase AM), contains PHP domain [Nucleotide transport and metabolism]
Statistics
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PSSM-Id: 512413
Aligned: 863 rows
Threshold Bit Score: 48.0364
Created: 24-Mar-2025
Updated: 26-Mar-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_122014398   31 IkngdIlrpqsgdCVNNHIHTCYS-FSPYSPTKAVWASYNAGLATCGIVDHDTVSG-----------------VREFIEA 92  
WP_095975701  542 T----V-------SADLHVHGTASfDSSLPDQDRVLSFDATDLQVIVASDHDVVYD-----------------YGQVVRS 593 
UCD01422      250 eddefL--------FDFHVHTTMS-DGWLTPEERVIWYINHGLDGAVFSDHGNMRG-----------------ALIARDY 303 
AWZ01195      506 F----I-------SADFHVHSGPSfDTVMPRAKRVATYLAEGAEVLVATEHETVFD-----------------FQPTIDR 557 
WP_133621814  628 Y----L-------NGDFHMHARGSiDSGLSFDDRVISIAAEGLETVVSSDHNHVSD-----------------YLPYIAR 679 
UCC38210      453 L----I-------SVDPHMHTQNS-DGRTRIPERIKSVVAEGVNVAISTDHNIITD-----------------YYPTLKK 503 
WP_160325589   36 V----L-------AVDFHIHTVFS-DGTVWPNIRVTEAMSEGLSAISLTEHIELTVqkkylakidglvdknqaHAIARDY 103 
WP_008240329   42 T----L-------KGDFHVHTVYS-DGRVWPDIRIQEAWHDGLDVIALTDHINYKGpvlkkamk--fedenlpHKDAEVI 107 
WP_141195765  615 Y----L-------SGDFHMHARGSiDSGLDFNSRVVSIAAEGVEVVASTDHNHVSD-----------------YRPYIYR 666 
WP_047010948  533 W----L-------SADLHVHSGASfDSTLPFSERLRSFVAQGAELLVASEHNRIVD-----------------YQDYPEK 584 
WP_122014398   93 -GKV-------IGM--ATTIGMECR-------------VDFSrtplkGrRInnpdqddiaYVTLHGIPHTQIdKVkafie 149 
WP_095975701  594 lGLQ-------ERM--SSVAGLETTghilwlkrpgydiPL-Vv----G------------HYNFWPLAYDPT-L------ 640 
UCD01422      304 v-EK-------NGLdfIVFIGQEWT-------------DH-E-----N-DI---------HINYFGLEEEIV-SLes--- 342 
AWZ01195      558 lEVG-------AYV--ATIAGTEITgevg-----sdrtPY-Tl----G------------HANAFPVDAQAL-A------ 599 
WP_133621814  680 nGLR-------PWL--NSVVGVELT-------------TF-Ef----G------------HFNAFPMNYDVG-S------ 713 
UCC38210      504 lGLN-------KYL--AVIAGSEVT-------------LS-------Gl-I---------HYNTFPLKYRPD-Eeyng-- 541 
WP_160325589  104 -SESrvlrdgqERV--NVIRGAEIT-------------RGF------G------------HFNCIYTTDNNR--Lhvpqr 147 
WP_008240329  108 -AER-------LGI--TLIRGLEIN-------------EPgQl---yG------------HFNILFLKDINE--Lk---- 143 
WP_141195765  667 nELH-------PWL--NSVVGVELT-------------TF-Ef----G------------HFNAFPLDYEVG-S------ 700 
WP_047010948  585 mALT-------DQV--QVVTGTELTglar-----sasaPF-Ti----G------------HSNVFPVKAEAK-E------ 626 
WP_122014398  150 pykeernkrnrlmvdkIndliaasgikldfdkdvvpisknneggsiterhilfalakklaekfgrglalldflkvemklp 229 
WP_095975701  641 ----------------Vrngap---------------------------------------------------------- 646 
UCD01422      343 ---------------yTpg------------------------------------------------------------- 346 
AWZ01195      600 ----------------Frrgaf---------------------------------------------------------- 605 
WP_133621814  714 ----------------Inggav---------------------------------------------------------- 719 
UCC38210          --------------------------------------------------------------------------------     
WP_160325589  148 eddp---------------------------------------------------------------------------- 151 
WP_008240329  144 ---------------pVq-------------------------------------------------------------- 146 
WP_141195765  701 ----------------Vnggav---------------------------------------------------------- 706 
WP_047010948  627 ----------------Ysggii---------------------------------------------------------- 632 
WP_122014398  230 vsdknekylqdteneyylydvlgvLKsdTSSfyidatsecpDV-KD---FIKLADEVG-------AISAYAYlgdvkdsv 298 
WP_095975701  647 --------------------dderVEp-----------------GE---LFDRVKASAppalrdqLIVQLNH-------- 678 
UCD01422      347 --------------------------gpKAM----------NA-SD---LISYVKTNG-------GYITVNHyn------ 373 
AWZ01195      606 --------------------anenRRw-----------------RE---VIADLKTRRa-----dSLIQLNH-------- 632 
WP_133621814  720 --------------------pwqsLPp-----------------QQ---IFDELRKHGtis-peeTIIQVNH-------- 750 
UCC38210      542 --------------------------------------aiyPLaEEvppLFKASRTKDp-----eAILQVNH-------- 570 
WP_160325589  152 -------------------avltdtdaaSYV----------ET-VN---SLAEANRQG-------AFCFWNH-------- 183 
WP_008240329  147 ----------------------------------------gDL-IQ---AFKKAKKQG-------AFIQLNH-------- 167 
WP_141195765  707 --------------------pwqrLPp-----------------QK---IFDELRSHGavs-eedTIIQINH-------- 737 
WP_047010948  633 --------------------pvenQRl-----------------RE---VIAGAKQHWp-----eAVFQLNH-------- 659 
WP_122014398  299 tgdKrTQKfe--------dDyl--eeL-------F---E-----------------VLK-E-------T----------- 322 
WP_095975701  679 ---Pw----------------------------aHq--EfgrdlgfpralalntleNLPaKddgtnagIyvrspr-ggfa 724 
UCD01422      374 -ydPnpngg-----ngvpyS--------------L---T-----------------QLM-Nw------------------ 394 
AWZ01195      633 ---A-RWDdrfapgspaweEdwsgdrAayfdhmgVg--Rsyn------------agEILgSdgn--rrLidpd------p 686 
WP_133621814  751 ---P-RDTi-----------------MgyfsqynVdpfTseatltfq-dpsvtgvdKIMaTistpsgpSfmrdcrseges 808 
UCC38210      571 ---P-RSEd-----------------LgyfnnykLd-kEs---------------aAFArEhf----dI----------- 598 
WP_160325589  184 ---PyAPGqn-------agS------Map---rkIh--R-----------------EMLdK------------------- 206 
WP_008240329  168 ---PlDGQg---------kD------Phw---reFh--Q-----------------KMFdE------------------- 188 
WP_141195765  738 ---P-RDSi-----------------LgyfgqynVdpfTtevtlpf---qeasgqdKLIaTlstssgnAymrdcrkedvd 793 
WP_047010948  660 ---P-Ramp-------gidAd-----LaffdhlsIg--Snyd------------pdQLLvAdin--rsLlevd------q 701 
WP_122014398  323 --G-----------FKAVTYMPTRN-Si---nQLTRl---KaLCK-K--YgffeisgedinS---------LRQSFICDa 370 
WP_095975701  725 nnGq-----------hTQEVMNGSSnDl---lPSYRafwfYvLGQ----------------Gq-------lVTGTANSD- 766 
UCD01422      395 --G-----------IDGFEIVNGDSygg--kyVQIR----Q-FCL-S--N-----------N---------LICIGGSD- 430 
AWZ01195      687 vtGrrd------idFDAMEVMNGISrEs---eRALRrdwlSlVSQ----------------Ge-------kIVATANSD- 733 
WP_133621814  809 crGtekfestlswdFDAIEVFNGKHl--------------ElLKHyRvpYp---------------------ASVGGADg 853 
UCC38210      599 --S-----------FDVLEVMNGPYfysssnyESIEdw-fHlLNR----------------Gy-------yFPLTGSSD- 640 
WP_160325589  207 --Kl----------IGGIEVANGGGi-----fYDAI----D-TAM-K--Y-----------D---------LAIIGGSD- 240 
WP_008240329  189 --Nl----------LDGLEIFNNKMl-----hKNAI----P-WAV-D--H-----------N---------LSITSSSD- 222 
WP_141195765  794 crGdkdfestfswdFDAIEIFNGKHl--------------EqLRHyRipYg---------aGewpeevsskIIETVCTDe 850 
WP_047010948  702 rsGfrd------idFDVIEVLNGSEfSv---yAQLRkdwfSlLNQ----------------Ga-------vRTATGNSD- 748 
WP_122014398  371 ykkpdfqnlidstwalighekAATK-----DI---------E----DgmfsqrtiqkypDLEERIQ 418 
WP_095975701  767 ---------------------SHGLtdntvGV---------Prnivyaatspgpgfdtarfnaalk 802 
UCD01422      431 ---------------------THINed--lNAfi--------------------------klELTD 447 
AWZ01195      734 ---------------------SHTAsq-qvGL---------Pr---Nmiaveedtieafdeaafvs 765 
WP_133621814  854 w-------------------pQHa----------------vD--------------------QIID 864 
UCC38210      641 ---------------------THSIdreepGYsrty--avyEgkkgDy----------lNWDALAR 673 
WP_160325589  241 ---------------------IHgparwregshrtvtlvlaqdlgdtamkeavearqtvalysntl 285 
WP_008240329  223 ---------------------IHYLv----GLshyewhrpmtllfaKe----------nSEESIKE 253 
WP_141195765  851 --------------------fADeletycddngidtdacehpldghsiddwcsfdldelharygkg 896 
WP_047010948  749 ---------------------SHDLhs-pvAA---------Pr---Ny---------------IYm 765 
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