Conserved Protein Domain Family
RlmE

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COG0293: RlmE (This model is not part of the current CDD release)
23S rRNA U2552 or 16S rRNA-U1369 or eukaryotic tRNA-C32/G34 (ribose-2'-O)-methylase RlmE/FtsJ/TRM7 [Translation, ribosomal structure and biogenesis]
23S rRNA U2552 or 16S rRNA-U1369 or eukaryotic tRNA-C32/G34 (ribose-2'-O)-methylase RlmE/FtsJ/TRM7; is part of the Pathway/BioSystem: 23S rRNA modification
Statistics
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PSSM-Id: 512400
Aligned: 802 rows
Threshold Bit Score: 182.55
Created: 24-Mar-2025
Updated: 26-Mar-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_045531005   1 MKvk---------------tqSKKVNKAWLNQHANDPWVKLAQKEGYRARAAFKLQEIDQTLH-------L---VRPG-Q 54 
WP_038539060   1 MKdksfrntk---qklktakgRKIGSINWLQRHINDPYVNLCKKKGYRSRAAFKLLEIDEKFK-------I---LNNV-K 66 
WP_100277553   1 MSfss-------------kskAARKTSAWYQRHANDPHVKQAQKEGKRSRAAFKLTEILDQHK-------Le--IKKN-A 57 
WP_011451935   1 MKnklh-----------rvgrCTASSSRWLYRHVNDPFVKKAKAEQYRSRAAYKLLEIDEKFN-------L---IRKG-F 58 
WP_236865341   1 MIklketk-------flrnknMKSSSARWISRHIKDEYVIAAKREKYRSRSAFKLIEIHEKEN-------I---FSRKcL 63 
WP_148952201   1 MKnkk--------------rgITASSRRWVERHDSDLYVRLAKQDGYRSRAAYKLLDIQKSFS-------V---INVD-N 55 
WP_011714571   1 MAk------------------QRPSSKRWLREHHNDPYVQQARREGYRSRAAYKLMELQEVVKedgksllL---IPVG-A 58 
WP_013951328   1 MTqevirryrtkkqqvktargRANSSVDWLRRHINDPYVHLAKKQGFVSRAAFKLIEIEEKYK-------L---INRS-S 69 
WP_231158774   1 MQkvv-------------nknFKTSSKKWMLRHINDPYVHKAKLMHYRSRAAFKLIQIDDKFK-------I---FSKKnM 57 
WP_108673516   1 MLkk----------------kFSYSSQKWLKRRKKDQYVHMAKELNYRSRAAFKLIEILDKFH-------IiktVKNG-E 56 
WP_045531005  55 CIVDLGCAPGAWCQYLRRRLa---PdgaaagalKGRIIGIDLLPME-PIEGVQFIQGDFGDAQLLAQLQQAL-------A 123
WP_038539060  67 CIIDLGAAPGGWLQIAKEKA----N--------KAKIIGIDLKEIK-PVEGVLLIEGDFLELIDNNEFQGAL-------P 126
WP_100277553  58 VVVDLGCAPGSWSVELAKKVg---P--------DGLVIGIDLLELN-QITGVTLIKGDFDSPEGQAALKNAL-------N 118
WP_011451935  59 VVLELGSAPGGWSQVIADILn---G--------TGRLIAVDLADMD-PISGVEVVKLDIELQR--KELYEYI-------S 117
WP_236865341  64 SVLDLGCSPGGWSQVATRILenniN--------NVTIVGVDLIGME-PIEGVNFIAGDFCDLTIQKSIVSF--------K 126
WP_148952201  56 VVLDLGSSPGSWSQVAINIA----K--------RGVVVAVDILPMK-KLSGVYFYQNDCLSKAFGIKVQELLfdvtgqkN 122
WP_011714571  59 NVVELGAAPGGWTQVAVKLAg---V--------EGSVVGIDLLAMD-PVPGAEILVGDFLDDAMLAQLQGLL-------H 119
WP_013951328  70 SIIDIGAAPGGWLQVIMSKKk---N--------NVCLIGTDLLKIAlDIPGLILIQGNFLEAPIQDQIKTSL-------S 131
WP_231158774  58 VIVDLGCSPGGWTQVVRQNS----E--------SHKIVGVDLIDMK-PIHNVTFINGDFCTQETQERIKSVL-------N 117
WP_108673516  57 VILDLGAAPGGWSQVISERLkkasV--------RASIIGIDLLHVM-PVSGVHFIQHDFLASDLMQKIQEIL-------S 120
WP_045531005 124 -QpmpavggaesaeaaptraaeaalrPVDLVLSDMAPNLSGIEGVDAARITHLVELALDFARSQLKPEGALVAKVFHGSG 202
WP_038539060 127 -D------------------------KVDVVLSDMAANACGDRQIDHLRLVELVGFALEFAFKKLNKGGCFVAKLLKGKE 181
WP_100277553 119 -Gr-----------------------QVDVVVSDMAPEMSGNKLVDQMRMIGLNEMTLHFARQYLKPGGDILMKTFMGEG 174
WP_011451935 118 -Gv-----------------------ELDVIVSDLAPSASGSRVTDSISSIRLAELVLHYAKNSLKKFGTVVTKILRGSE 173
WP_236865341 127 -N------------------------KFDIIMSDMAPNTIGHKSTDMIRSAALIEQVCEFADKYLSEGGTLVFKSFCQNI 181
WP_148952201 123 -G------------------------CVDVILSDMSPNSSGFGDIDHVRSLLLCEACMKVAHDRLRKNGNLVMKCLQGAE 177
WP_011714571 120 eG------------------------RVDVVLSDMAPNMCGVKSADQLRGEALAEAAFQFVEENLKTGGNFAVKLFNGPG 175
WP_013951328 132 -K------------------------KPDLILSDMAAESCGDRSLDHLRSAELVNSAIEFAQTILDKGGNLVFKLIRGKE 186
WP_231158774 118 -L------------------------KANLVLSDIAPPLSGNKQCDVFKIEDIACQVLEFCIKNLKIGGIAIVKQFQFGN 172
WP_108673516 121 -Qfdetseaaqdre-vekssdilenfSAALIVSDMLPNASGDKTADHLRFAALLNESLLFAIKYLKKGGFFVTKVIRCGK 198
WP_045531005 203 YQ-EQVQAFRAAFRQVKAIKPKASRDKSSETFLIGLGL-----KA 241
WP_038539060 182 EK-FLLDEAKKHFQTVKYFKPDASYDDSSEVYLIALKF-----KN 220
WP_100277553 175 YD-TFRRELGQSFKRIKNIKPAASRKTSPEFFLLGLDF-----KG 213
WP_011451935 174 DEyRFVNSLRKQFKKIEYFKPDASRKASREIYLILLGKl----S- 213
WP_236865341 182 SQ-NSQQFLKSNFAYFKRIKPKSSRKESIEVYFVAKNF-----NG 220
WP_148952201 178 QD-NFISHIRTFFSKVTLFKPKASRKESREIYIVAQGKl------ 215
WP_011714571 176 FH-DMVKQARAMFTVVKVVKPDSSRSRSPEHYLVGMGF-----KG 214
WP_013951328 187 EA-DILKMCKKLFSVVKIFKPKSSYSDSAEIYTICLNRl------ 224
WP_231158774 173 N--RVVMQYRKYFRSVKLFKPDASRPESSEVYIVADGFfdndiiG 215
WP_108673516 199 ES-AVIKKHSEHFDNFQFFKPHSSYSDSAEIFVVLKKK------- 235
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