CDD Conserved Protein Domain Family: RpoC

Sequence Alignment

include consensus sequence

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NP_661062       1 MIfsqgssplkGDfskikfsIASP--ESIL----A-HS---RGEVL--KPETinyrtfKPERDGLMCEKIFGPTkdWECY 68  
WP_011810016  842 TAa--------EE-------VLHPenRMVLvpvgVmLDedlIEELEaaGVDE------VKVRTALTCETRYGLC--AKCY 898 
WP_011485317  842 TAv--------ED-------VLHPenRSVLakagAmLDedlIDELEaaGVDE------VKVRTALTCETRFGLC--AKCY 898 
WP_012547665  815 FAa--------ED-------VYNd-kGELIiaknEyIDvekAKLVEkfGIKR------VKIRSPMTCKSEKGIC--QKCY 870 
WP_013330987  844 VVa--------QD-------VIDPntEEVLiprgTlLDekwCAELDtmGVDE------IVVRSAISCQTPHGVC--SACY 900 
WP_013902914  842 tAa--------ED-------VLHPetRATLvpagNmLDedaIEELEaaGVDE------VKVRTALTCATRFGLC--ARCY 898 
WP_076346405  818 gekvevslaqsirgrvsrvnildpisdtvvvresEmITlaaARKLEdmQIEK------IQVRSPMTCEAPLGVC--RRCY 889 
WP_011485317  842 TAv--------ED-------VLHPenRSVLakagAmLDedlIDELEaaGVDE------VKVRTALTCETRFGLC--AKCY 898 
WP_013902914  842 tAa--------ED-------VLHPetRATLvpagNmLDedaIEELEaaGVDE------VKVRTALTCATRFGLC--ARCY 898 
WP_013330987  844 VVa--------QD-------VIDPntEEVLiprgTlLDekwCAELDtmGVDE------IVVRSAISCQTPHGVC--SACY 900

NP_661062      69 CGKYK--RVRYK----GIicdrcgvevttksVRRERMGH--ISLAVPVVHTWFFRSV-----------------PSKIGA 123 
WP_011810016  899 GRDLGrgGLINLgeavGV-------------IAAQSIGEpgTQLTMRTFHIGGAASRaviasrveaksngvigfSSTMRY 965 
WP_011485317  899 GRDLGrgGLINIgeavGI-------------IAAQSIGEpgTQLTMRTFHIGGAASRaaiassveaksngvigfNAPMRY 965 
WP_012547665  871 GEDLAthRLVNIgeavGV-------------IAAQSIGEpgTQLTMRTFHTGGVALTslnyqniqf-rvtgkvdfVDLKF 936 
WP_013330987  901 GRDLArgHQVNVgesvGV-------------IAAQSIGEpgTQLTMRTFHIGGAASRasavdsvqv-khggkvrlHNIKH 966 
WP_013902914  899 GRDLGrgGLVNVgeavGV-------------IAAQSIGEpgTQLTMRTFHIGGAASRaaiassveaksngvigfNSTMRY 965 
WP_076346405  890 GMDLAtgQLVEIgmavGI-------------IAAQSIGEpgTQLTMRTFHIGGVATRavedkdvks-kregkikfVGLNI 955 
WP_011485317  899 GRDLGrgGLINIgeavGI-------------IAAQSIGEpgTQLTMRTFHIGGAASRaaiassveaksngvigfNAPMRY 965 
WP_013902914  899 GRDLGrgGLVNVgeavGV-------------IAAQSIGEpgTQLTMRTFHIGGAASRaaiassveaksngvigfNSTMRY 965 
WP_013330987  901 GRDLArgHQVNVgesvGV-------------IAAQSIGEpgTQLTMRTFHIGGAASRasavdsvqv-khggkvrlHNIKH 966

NP_661062     124 L-----------LDLStKElERIIYY-------EVYVV-------INPGEpgekqgIKKFdRLTE-EQYF-QIITEYEdn 176 
WP_011810016  966 Vsntk----gelVVIA-RS-GEIVIHdeygrerERHKVpygatltVNADQn-----VKAGtVLAKwEPLTrPIITEFA-- 1032
WP_011485317  966 Vtngk----gelVVIA-RS-GEIVIHdehgrerERHKVpygatltVKADQt-----IKAGaILANwDPLTrPIITEFA-- 1032
WP_012547665  937 RdrfevlgkrekMVVG-RN-GKVVVKgdg--qeEEIIIppgaiisIEPGSd-----VTKGmSLGYiDPNLrYITSPYS-- 1005
WP_013330987  967 Verad----gklVVVS-RS-SALAVAdehgrerEYYKLpygaelsVKDGEa-----VEAGqAVAKwDPHThPIVAEAE-- 1033
WP_013902914  966 Vtnsk----gelVVIA-RS-GEVVIHdehgrerERHKVpygatltVKADQq-----VKAGtILANwDPLTrPIITEFA-- 1032
WP_076346405  956 Vinde----gkqIALS-RN-GEIQILdpkgrelEKYDVpdgammiVEDGQq-----INRGqMLCEwDPHNiPILAEVG-- 1022
WP_011485317  966 Vtngk----gelVVIA-RS-GEIVIHdehgrerERHKVpygatltVKADQt-----IKAGaILANwDPLTrPIITEFA-- 1032
WP_013902914  966 Vtnsk----gelVVIA-RS-GEVVIHdehgrerERHKVpygatltVKADQq-----VKAGtILANwDPLTrPIITEFA-- 1032
WP_013330987  967 Verad----gklVVVS-RS-SALAVAdehgrerEYYKLpygaelsVKDGEa-----VEAGqAVAKwDPHThPIVAEAE-- 1033

NP_661062     177 qdledndpakfvakmGGE-AIHMLL-K-------------------GLNLdeiALNLR--------KVLkesGS-EQKRA 226 
WP_011810016 1033 ---------------GRT-KFENVEeG--------------------LTV---ARQLD---------EV---TGlSTL-- 1059
WP_011485317 1033 ---------------GKV-LFENVEeG--------------------VTV---AKQVD---------DV---TGlSTL-- 1059
WP_012547665 1006 ---------------GKVvRVEKVLeNrskrfnlvnvrynrdinkyELSF---NEETHtvfcsvvlLDQ---SGnEHRIE 1064
WP_013330987 1034 ---------------GQV-QYADMDeG--------------------VTI---HRSVD---------EM---TGlSSI-- 1060
WP_013902914 1033 ---------------GKV-KFENVEeG--------------------LTV---AKQVD---------EV---TGlSTL-- 1059
WP_076346405 1023 ---------------GKI-RFDDIVeG--------------------ETM---KAEAD---------PS---GHiRR--- 1048
WP_011485317 1033 ---------------GKV-LFENVEeG--------------------VTV---AKQVD---------DV---TGlSTL-- 1059
WP_013902914 1033 ---------------GKV-KFENVEeG--------------------LTV---AKQVD---------EV---TGlSTL-- 1059
WP_013330987 1034 ---------------GQV-QYADMDeG--------------------VTI---HRSVD---------EM---TGlSSI-- 1060

NP_661062     227 DAL-------------KRLKVVEAFR-------------------KSYepqkrtrkkstglfpeedspelyiyegNKPEY 274 
WP_011810016 1060 -------------------VVIDPKRrg----------------aAKVv---------------------------RPQV 1077
WP_011485317 1060 -------------------VVIDPKRrg----------------aTKVi---------------------------RPQV 1077
WP_012547665 1065 LPEgatflfrigdlidEGDLIAEYSRetmkiqscedgkvvnilernGEiidk-------------------ivatGEAVV 1125
WP_013330987 1061 -------------------EVIESAArp---------------maGRDk---------------------------RPMI 1079
WP_013902914 1060 -------------------VVIDPKRrg----------------sAKVv---------------------------RPQV 1077
WP_076346405 1049 -------------------TIIEHKG---------------------Dl---------------------------HPQI 1061
WP_011485317 1060 -------------------VVIDPKRrg----------------aTKVi---------------------------RPQV 1077
WP_013902914 1060 -------------------VVIDPKRrg----------------sAKVv---------------------------RPQV 1077
WP_013330987 1061 -------------------EVIESAArp---------------maGRDk---------------------------RPMI 1079

NP_661062     275 MVMevv--------------pvIPPELRPLvpLEGG----------------RFA--TSDLNDLYRRVIIRNNrlKKlid 322 
WP_011810016 1078 KLIdaqgnevkipgtdhsvtigFQVGALIQ--VRDGqdvgpge---vlaripVEGqkTRDITGGLPRVAELFE--AR--- 1147
WP_011485317 1078 KLIdatgnevkipgtdhsvtigFQVGALVQ--VRDGqdvgpge---vlaripVEGqkTRDITGGLPRVAELFE--AR--- 1147
WP_012547665 1126 VVRnndgk---------eieyrIPRGLKLH--VNVGdhvefgtilayfpsyqQRTakTEDIVQGLPRVEELFE--AR--- 1189
WP_013330987 1080 LLAdetgkpvtvtgsdtpvqylLPGKAVVT--VDNGsrigvge---vvaripVEAtgNKDITGGLPRVADLFE--AR--- 1149
WP_013902914 1078 KLVdasgnevkipgtdhsvtigFQVGALIQ--VRDGqdvggge---vlaripIEGqkTRDITGGLPRVAELFE--AR--- 1147
WP_076346405 1062 VIVdaegkt--------ldykyIPERATIE--VDDGqmitagt---lvaktpREVggTQDITGGLPRVTELFE--AR--- 1123
WP_011485317 1078 KLIdatgnevkipgtdhsvtigFQVGALVQ--VRDGqdvgpge---vlaripVEGqkTRDITGGLPRVAELFE--AR--- 1147
WP_013902914 1078 KLVdasgnevkipgtdhsvtigFQVGALIQ--VRDGqdvggge---vlaripIEGqkTRDITGGLPRVAELFE--AR--- 1147
WP_013330987 1080 LLAdetgkpvtvtgsdtpvqylLPGKAVVT--VDNGsrigvge---vvaripVEAtgNKDITGGLPRVADLFE--AR--- 1149

NP_661062     323 iRaPEvilrnekrmlqeavdalfdnsrkanavktgesnrplKSLSDALKGkqgrfRQnLLG-KrvdySGRSVIVVGpelk 401 
WP_011810016 1148 -T-PKd-----------------------------------KGTLAEMTGt----VS-FGKeTk---GKVRLQITD---- 1178
WP_011485317 1148 -T-PKd-----------------------------------KGTLAEMTGt----VS-FGKeTk---GKVRLQITD---- 1178
WP_012547665 1190 -R-PKg-----------------------------------KSIIAGVSGi----VR-ITRtK----SGEKIIIEG---- 1219
WP_013330987 1150 -K-PKe-----------------------------------PAILAEVSGv----IS-FGKeTk---GKRRLTITP---- 1180
WP_013902914 1148 -S-PKd-----------------------------------KGVLAEMTGt----VS-FGKeTk---GKIRLQITD---- 1178
WP_076346405 1124 -R-PKe-----------------------------------PAVIAEIDGr----VE-LLEeKr--rGKRTIIVRN---- 1155
WP_011485317 1148 -T-PKd-----------------------------------KGTLAEMTGt----VS-FGKeTk---GKVRLQITD---- 1178
WP_013902914 1148 -S-PKd-----------------------------------KGVLAEMTGt----VS-FGKeTk---GKIRLQITD---- 1178
WP_013330987 1150 -K-PKe-----------------------------------PAILAEVSGv----IS-FGKeTk---GKRRLTITP---- 1180

NP_661062     402 lHQcGlpksmaielfqpfvirrlvergiaksvksakkliDKKDpvvwdvlekvidghpvlLnRAPTLHRLGiqafqptLI 481 
WP_011810016 1179 -PE-G----------------------------------HVFE-----------------E-LVPKEKNIL-------VH 1197
WP_011485317 1179 -PD-G----------------------------------KVWE-----------------D-LVPKEKNIL-------VH 1197
WP_012547665 1220 -ED-G----------------------------------SKDE-----------------H-ILPPNAQLL-------VK 1238
WP_013330987 1181 -ED-G----------------------------------DPFE-----------------M-LIPKWRQIA-------VF 1199
WP_013902914 1179 -PE-G----------------------------------GVHE-----------------E-LVPKEKNIL-------VH 1197
WP_076346405 1156 -ES-G----------------------------------IERE-----------------H-LVPHGKYLR-------VH 1174
WP_011485317 1179 -PD-G----------------------------------KVWE-----------------D-LVPKEKNIL-------VH 1197
WP_013902914 1179 -PE-G----------------------------------GVHE-----------------E-LVPKEKNIL-------VH 1197
WP_013330987 1181 -ED-G----------------------------------DPFE-----------------M-LIPKWRQIA-------VF 1199

NP_661062     482 EGKAiqlhplvctafnadfDGDQMAvhvplspeaqleasllmlsshnlilpqsgkpvtvpsqdmvlgmyyltkaRfgdvg 561 
WP_011810016 1198 EGQVv-------------nKGESIV-------------------------------------------------D----- 1210
WP_011485317 1198 EGQVv-------------nKGESIV-------------------------------------------------D----- 1210
WP_012547665 1239 EGDYv-------------tVGQELT-------------------------------------------------K----- 1251
WP_013330987 1200 EGETv-------------eKGEVIS-------------------------------------------------D----- 1212
WP_013902914 1198 EGQVv-------------nKGESVV-------------------------------------------------D----- 1210
WP_076346405 1175 GSDRv-------------rAGDPLV-------------------------------------------------E----- 1187
WP_011485317 1198 EGQVv-------------nKGESIV-------------------------------------------------D----- 1210
WP_013902914 1198 EGQVv-------------nKGESVV-------------------------------------------------D----- 1210
WP_013330987 1200 EGETv-------------eKGEVIS-------------------------------------------------D----- 1212

NP_661062     562 qGqlFYSMEEVIIAyneervglhaqifvkydgkvdqvsdpvrlvdtlvpeeqaerrawlksqieqkkllvttVG-----R 636 
WP_011810016 1211 -G--PADPQDILRL----------------------------------------------------------LGieelsR 1229
WP_011485317 1211 -G--PADPQDILRL----------------------------------------------------------LGmeelaR 1229
WP_012547665 1252 -G--YRNPAEILAN----------------------------------------------------------EGlaavqR 1270
WP_013330987 1213 -G--PSNPHDILRL----------------------------------------------------------LGiaelaK 1231
WP_013902914 1211 -G--PADPQDILRL----------------------------------------------------------LGmeelaR 1229
WP_076346405 1188 -G--PLVPHDILRI----------------------------------------------------------SGeevvqR 1206
WP_011485317 1211 -G--PADPQDILRL----------------------------------------------------------LGmeelaR 1229
WP_013902914 1211 -G--PADPQDILRL----------------------------------------------------------LGmeelaR 1229
WP_013330987 1213 -G--PSNPHDILRL----------------------------------------------------------LGiaelaK 1231

NP_661062     637 VIFNQhmpEEIgfIN-K-L-INKKVAKELIAQLssevgnvetarfldnIKEVGFdyaMRGGLSIGLSDAIVPETkvkhIK 713 
WP_011810016 1230 YIVDEv--QDV--YRlQgVkINDKHIEVIVRQM---------------LRRVVV---EDAGESNYISGEQVERSe---IL 1284
WP_011485317 1230 YIVDEv--QDV--YRlQgVkINDKHIEVIVRQM---------------LRRVVV---ENVGDSSYIAGEQVERSa---ML 1284
WP_012547665 1271 YIVDEv--QKV--YLkQgAeINDKHIEVIVRQM---------------TNRVRI---EDPGDSNFLFGQLVNKVt---FE 1325
WP_013330987 1232 YIVAEv--QDV--YRlQgVgINDKHIEVIVRQM---------------LRKVEI---TDAGDSDFIPGDQVELVr---VL 1286
WP_013902914 1230 YIVDEv--QDV--YRlQgVkINDKHIEVIVRQM---------------LRRVVV---ENPGESGYIAGEQVERSe---ML 1284
WP_076346405 1207 YLLREi--QNV--YRsQrVeIDDKHLEIIIAQM---------------LRKVRV---DSLGDTGLLPGSVIDKFe---FR 1261
WP_011485317 1230 YIVDEv--QDV--YRlQgVkINDKHIEVIVRQM---------------LRRVVV---ENVGDSSYIAGEQVERSa---ML 1284
WP_013902914 1230 YIVDEv--QDV--YRlQgVkINDKHIEVIVRQM---------------LRRVVV---ENPGESGYIAGEQVERSe---ML 1284
WP_013330987 1232 YIVAEv--QDV--YRlQgVgINDKHIEVIVRQM---------------LRKVEI---TDAGDSDFIPGDQVELVr---VL 1286

NP_661062     714 NAQRDSA-----------------------------KI-IKE----YNRGTltDNERYNQIVDVWQKTSNLVADESYEK- 758 
WP_011810016 1285 NTNEALR----------------------------------------AAGK--IPAVYSNLLLGITKASLSTDSFISAAs 1322
WP_011485317 1285 DANDALR----------------------------------------AEGK--IPATFSNLLLGITKASLSTDSFISAAs 1322
WP_012547665 1326 KVKQKLE----------------------------------------EEGK--RPPVAREVVLGITKAALTTESVISAAs 1363
WP_013330987 1287 EENARLA----------------------------------------NEDK--FPAKYQRLLLGITKASLATESFISAAs 1324
WP_013902914 1285 DTNDRLR----------------------------------------SEDK--IPATYSNLLLGITKASLSTDSFISAAs 1322
WP_076346405 1262 RVNNELTacvkikdpgdseyrvgdivprdhfeqenlRVeAGGgkkaEWLRT--KPAAASTQLLGITKAAVQSESFISAAs 1339
WP_011485317 1285 DANDALR----------------------------------------AEGK--IPATFSNLLLGITKASLSTDSFISAAs 1322
WP_013902914 1285 DTNDRLR----------------------------------------SEDK--IPATYSNLLLGITKASLSTDSFISAAs 1322
WP_013330987 1287 EENARLA----------------------------------------NEDK--FPAKYQRLLLGITKASLATESFISAAs 1324

NP_661062     759 LkkdrdgFNPLYMMLDSGARGSREQVRqltgmrgliarpqksmsgqpG---EIIenpIISNLKEGLTVLEYFISthgark 835 
WP_011810016 1323 F------QETTRVLTEAAIMGKRDELR--------------------GlkeNVI---VGRLIPAGTGLAYHQAR------ 1367
WP_011485317 1323 F------QETTRVLTEAAIMGKRDELR--------------------GlkeNVI---VGRLIPAGTGMAYHEAR------ 1367
WP_012547665 1364 F------QETTRVLAEAAVKGKEDYLE--------------------GlkeNVI---IGRLIPAGTGLFKRIVP------ 1408
WP_013330987 1325 F------QETTRVLTEAAVTGKRDYLR--------------------GlkeNVV---VGRLIPAGTGLTHHAER------ 1369
WP_013902914 1323 F------QETTRVLTEAAIMGKRDELR--------------------GlkeNVI---VGRLIPAGTGMAYHQAR------ 1367
WP_076346405 1340 F------QETTKVLTEAALAGKSDYLV--------------------GlkeNVI---LGHLVPAGTGFKAHLEA------ 1384
WP_011485317 1323 F------QETTRVLTEAAIMGKRDELR--------------------GlkeNVI---VGRLIPAGTGMAYHEAR------ 1367
WP_013902914 1323 F------QETTRVLTEAAIMGKRDELR--------------------GlkeNVI---VGRLIPAGTGMAYHQAR------ 1367
WP_013330987 1325 F------QETTRVLTEAAVTGKRDYLR--------------------GlkeNVV---VGRLIPAGTGLTHHAER------ 1369

NP_661062     836 glsdtslKTaDAgylTRRlHDVAQDvivTidDCGtT--RglhvernieeeTSGq-------iKFRE 892 
WP_011810016 1368 -------KA-KD---AMDdAERRAI-------------------------ADAeaaemaaqaEVPE 1397
WP_011485317 1368 -------KA-KD---LMDdAERRAI-------------------------AEAeaae---leaATA 1394
WP_012547665 1409 -------QK-RT---AKK-VEVLED---G---------------------GEV---------EINS 1429
WP_013330987 1370 -------RR-KR---EDA-ERMLHP-------------Sa----------QDVeqe---lgaQLTA 1397
WP_013902914 1368 -------KA-KD---AMDeAERRAI-------------------------ADAeaae---laaVGE 1394
WP_076346405 1385 -------EV-RI---HPD-ALEALA------EKG-SpySr---------yRDEapa---tagAAKE 1419
WP_011485317 1368 -------KA-KD---LMDdAERRAI-------------------------AEAeaae---leaATA 1394
WP_013902914 1368 -------KA-KD---AMDeAERRAI-------------------------ADAeaae---laaVGE 1394
WP_013330987 1370 -------RR-KR---EDA-ERMLHP-------------Sa----------QDVeqe---lgaQLTA 1397

Conserved Protein Domain FamilyRpoC

Conserved Protein Domain Family
RpoC