Conserved Protein Domain Family
RsmA

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COG0030: RsmA (This model is not part of the current CDD release)
rRNA adenine N6-methylase, includes 16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM and 23S rRNA A2058 N6-methylase ErmO/TlrD (may also have DNA glycosylase/AP lyase activity) [Translation, ribosomal structure and biogenesis]
rRNA adenine N6-methylase, includes 16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM and 23S rRNA A2058 N6-methylase ErmO/TlrD (may also have DNA glycosylase/AP lyase activity); is part of the Pathway/BioSystem: 16S rRNA modification
Statistics
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PSSM-Id: 512390
Aligned: 862 rows
Threshold Bit Score: 161.451
Created: 24-Mar-2025
Updated: 26-Mar-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_246196326   1 Mpapar-----qtqsYLRGlf------------aRHGISPRHHLGQNFLIDLNIHELIVDS-AE---LAAG-DVVLEVGT 58 
WP_010256780   1 ---------------------------------mTKKKLPVRFTGQHFTIDKVLIKDAIRQ-AN---ISNQ-DTVLDIGA 42 
WP_174449051   1 ------------------------------------MSSRRRRLGQHFLRSERAALELLGPlED---AKPH-EVVAEIGT 40 
BCS90591       1 Md------------qKLYDyl-------------vRSFSSNKRYGQNFLISERIAEAEAAH-S------EG-KIVLEVGP 47 
WP_196817941   1 -------------------------------------MKKSTKLGQNFLIDHTITRKIIQE-SR---INID-DVIYEVGT 38 
UYP46952       1 Mpfl--------srtQLIKlf------------qSSKFIPESIKGQNYIADYALCRKIGNC-AKg--SEQY-KCILEIGP 56 
QQR93133       1 Mqe----------leSLHRdl------------lSANVFPEKRFSQNFLINPEILDLLVEK-AD---ISPK-DHVIEIGG 53 
WP_012186379   1 Mv-------------SLNDfyavdkwtliklaksALGLGIRVGGDVHFMVDPVYLNTIAQL-A------KD-EKVLEVGF 59 
AJF60014       1 Msl----------faELNNqm------------vNYHFRPNRKMAQCFIINGEVIHKMVSA-AQ---LKES-DKVLEVGA 53 
WP_010865830   1 MppgsgrggrrraesLVREvl------------gLAGLRPSDRLGQHFLIDDRAVGEFLKP-LEkaaAE-GiREALEIGP 66 
WP_246196326  59 GAGALTALMGSRGATVVAVEVDPGMAALTREAVAD---M--------------P----AVRVIHSDALANkntlspALIE 117
WP_010256780  43 GKGFLTVHLLKIANNVVAIENDTALVEHLRKLFs---dA--------------R----NVQVVGCDFRNF------AVPK 95 
WP_174449051  41 GRGALTRRLADGGSLVVSVELDRDLCAATAAVLGQg-rP--------------W----NLELVCGDAYRT------IRR- 94 
BCS90591      48 GLGFLTERLCKYSKKVIAIEKDKRLYSILKMYMSN---I--------------S----NLELIHGDIFEI------D-ES 99 
WP_196817941  39 GKGILTTELCKISKFVHSFELDSALYSHCKKNL-Kh---------------------aNLALNHLDGFNE------NLTI 90 
UYP46952      57 GFGAFTDFLFPLSEKVCVVEKDPKSSQYLMDYYKSripTqvinsreiqylgyvPlk-tQLTIVEDDFFSL------PTP- 128
QQR93133      54 GTGVVTQKIAETNARVTVLEVHPKLIPFLQKKFAS---H--------------K----NVDVIGKDFLHV------ELDS 106
WP_012186379  60 GLSYLTHYLAKYAQHVFACDVNPMMIKAIKa---------------------iGlsevNADLFICDALTY------KpP- 111
AJF60014      54 GTGFLTRELLK-HSKVIAVELDETLAALLREQFAN---Eik-----------sG----KLKLVEGSILSV------KVPK 108
WP_010865830  67 GAGSITLPAAEVLDRIVAVELDNRLASALSRLAP-------------------A----RVAVITGDGVSH------AAAS 117
WP_246196326 118 AVEeamarggaarpgdggrapassggtspsplvgegrgevaaravdegrargaeearpsevphpggggrplslalphggg 197
WP_010256780     --------------------------------------------------------------------------------    
WP_174449051     --------------------------------------------------------------------------------    
BCS90591     100 IIK----------------------------------------------------------------------------- 102
WP_196817941     --------------------------------------------------------------------------------    
UYP46952         --------------------------------------------------------------------------------    
QQR93133     107 I------------------------------------------------------------------------------- 107
WP_012186379 112 I------------------------------------------------------------------------------- 112
AJF60014         --------------------------------------------------------------------------------    
WP_010865830     --------------------------------------------------------------------------------    
WP_246196326 198 rgqepgsegrgegvgepptsQaplcPL-KLVANLPYSVATPVISNLLVSP-RlSPFLLVVTIQRELADRMLAAPSTPGYG 275
WP_010256780  96 --------------------F----PF-KVVSNIPYGITSDIFKILMFESlE-NFLGGSIVLQLEPTQKLFS-RK--LYN 146
WP_174449051  95 -------------------------FD-YLISSPPYSESSDTVEWLASK----DFRIASLVLQEDFVRKALSDPSDRRYG 144
BCS90591     103 --------------------E----VD-IVIANLPYNISSRFIEWLLEN-----NLRAVLCLQKDFVDRLIAKAGNRNYS 152
WP_196817941  91 --------------------P----FD-IFFSSLPYYESRNAVTWLCQK----NFKRGIILLQREFVEKLLSKPGEKNYR 141
UYP46952     129 --------------------D----AE-LIISNIPFTHVFEFILKLTESw---NSRRALLILQKEVMDHILARPNQSGYT 180
QQR93133     108 -------------------------PFtHVCCSPPYAIADDIMLGLFHHG----FKTASMVWQMEFAEKLIAPPGSQSYG 158
WP_012186379 113 -------------------------EL-TVVSNIPYSITSRLLLRLLTDY---GARKLILTLQREVALRLAAKPGSTDYG 163
AJF60014     109 --------------------------FnKVVALPPYTISSELAFWLLRHD----FELAVVGFQREFARKMLSVEGFKEYN 158
WP_010865830 118 --------------------Q----AP-LVFSNTPFNLSPAIVEALAVN--N-RVAAAVLGVQYEVARRMTARPGSRDYS 169
WP_246196326 276 SLAILVQALADVEL-VRVLQPQVFWPRPKVESAVVRIRPSAERR-A----SIDVPWFHDVVRKAFLHRRKNLRHVLAGMW 349
WP_010256780 147 PYTVFYHTFFDLKL-VYEVGPESFLPPPTVKSALLNIKRKH-LF-Fd---FKFKAKYLAFISCLLEKPDLSVKTALKSIF 220
WP_174449051 145 AISAFVQLAFRAEL-GSRVPSSAFSPPPKVDSRVVLLRPRV-AM-Se---REAR-WALSRLRALFSHRKNALSRLCRELG 217
BCS90591     153 RISILSNLNFRIIK-IMDVDESAFYPKPKVKSSIIYIEPLGKD--I------D-KETYHIIELIMQHKKKKLRNAIIDSN 222
WP_196817941 142 AISILSQYRFSINK-LLDVPRTSFSPMPKVDSVLIEISPKT-LP-Lt---NK----VIKDIHFLLSFRKKTTSFIVNYFR 211
UYP46952     181 ILSVICGFFFDSQI-LLEIPSKSFYPKPKVSSLLIELLPNKNlN-LelisKEERKNFLVFLKTVMQFKEKHLQNTFLLI- 257
QQR93133     159 PLSVICQYFYDGTI-AKKISPQSFYPSPQQFSAILVLKARKKV--Vk---LSDYDLFVLFLRTLFRFKNKTVLNAVQHTI 232
WP_012186379 164 RLSVITQCLSLVKV-IKHVPPWAFWPRPKVYSAIVELKPlPKP-------CVDVRALESLTSKLFTQPNKKAIKVIKQFY 235
AJF60014     159 SLSVLVNYHFSGEVlIENLSPENFYPKPNSFSSLVVLRRKEPE--Ik---VKDEEKFRRFLKELFRLKNKNLSNALQKSF 233
WP_010865830 170 RLSVLVSLVFHAEL-AGVVRPQAYYPRPQVLTAVVTLRRRRRwRsL-------YARALELAGCAFTQRNKKASKVLRRC- 240
WP_246196326 350 P----Drwtk------pdvdAFLAP-LS------IEG---SLR-AEALTVPQFLALAA-A------LK----G-R---WS 393
WP_010256780 221 R----Ksq----------vrSISEK-FG------LNL---NAQ-IVCLSPSQWVNCFL-E------ML----E-V---VP 260
WP_174449051 218 c-------------------GWIQE-----------E---NIR-VRELAPKEALAVAA-A------IP----A-E---R- 247
BCS90591     223 Hilk--------------isN-ITKlADs-----IREnlrDQR-VFKLEPDALVEVAR-Y------IK----D-N---AE 266
WP_196817941 212 k-------------------NYAQD-LNsfd-hnGFG---KNK-LIKLSPEEIVRFSS-Y------LN----N-T---FN 251
UYP46952     258 -----QaqnplffenfphfkDALRE-LN------L-----NRSvLREMTPAAIFHLMQkSrkkmndLRa---NcepigS- 316
QQR93133     233 KhlkaEknee-------kilKIVKE---------MDWe--DLK-VFLLEPEELVELFE-E------VApllpSmK---R- 282
WP_012186379 236 Glreg-----------eapsYLL-----------------NKR-VRELSVNEVAELVN-Vl-----I-----N-M---GK 271
AJF60014     234 PflreElglse-----ekfrEKCSK---------LKEt--EKK-VCFFSAEEFAGIFN-E------LY------------ 277
WP_010865830 241 ----------------------LEA-AGcapppwLDSl-gDAR-VWMLRPEDFVGLAE-A------CR----G------- 277
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