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To fasta reader, add support for setting flags using flag names rather than numeric values.
xobjread: remove trailing whitespace; JIRA:RW-1283
JIRA: RW-958 Some cleanup. Marked some CFastaReader flags as deprecated.
JIRA: RW-709 RW-710 Updated test code support reading of Bioseq sets. Added test case involving the id strings listed in RW-710 that the code parses without complaint
JIRA: RW-910 Added test case involving excluded mods
JIRA: RW-910 Bug fix
JIRA: RW-910 Bug fix and new test cases
JIRA: RW-910 Bug fix
JIRA: RW-910 Now read FASTA reader flags from config file
JIRA: RW-910 Updated unit test source code
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