NCBI C++ Toolkit Cross Reference

  C++/src/objtools/format/ctrl_items.cpp


/* $Id: ctrl_items.cpp 68046 2015-07-06 19:29:12Z gotvyans $ * =========================================================================== * * PUBLIC DOMAIN NOTICE * National Center for Biotechnology Information * * This software/database is a "United States Government Work" under the * terms of the United States Copyright Act. It was written as part of * the author's official duties as a United States Government employee and * thus cannot be copyrighted. This software/database is freely available * to the public for use. The National Library of Medicine and the U.S. * Government have not placed any restriction on its use or reproduction. * * Although all reasonable efforts have been taken to ensure the accuracy * and reliability of the software and data, the NLM and the U.S. * Government do not and cannot warrant the performance or results that * may be obtained by using this software or data. The NLM and the U.S. * Government disclaim all warranties, express or implied, including * warranties of performance, merchantability or fitness for any particular * purpose. * * Please cite the author in any work or product based on this material. * * =========================================================================== * * Author: Frank Ludwig, NCBI * * File Description: * flat-file generator -- control item implementation * */ #include <ncbi_pch.hpp> #include <corelib/ncbistd.hpp> #include <objects/general/Date.hpp> #include <objects/seq/Bioseq.hpp> #include <objects/seq/MolInfo.hpp> #include <objects/seqloc/Textseq_id.hpp> #include <objects/seqblock/GB_block.hpp> #include <objects/seqblock/EMBL_block.hpp> #include <objects/seqblock/SP_block.hpp> #include <objects/seqblock/PDB_block.hpp> #include <objects/seqblock/PDB_replace.hpp> #include <objects/seqfeat/BioSource.hpp> #include <objects/seqfeat/Org_ref.hpp> #include <objects/seqfeat/OrgName.hpp> #include <objects/seqfeat/SubSource.hpp> #include <objmgr/scope.hpp> #include <objmgr/seqdesc_ci.hpp> #include <objmgr/feat_ci.hpp> #include <objmgr/bioseq_handle.hpp> #include <objmgr/util/sequence.hpp> #include <objtools/format/formatter.hpp> #include <objtools/format/text_ostream.hpp> #include <objtools/format/items/ctrl_items.hpp> #include <objtools/format/context.hpp> #include <objmgr/util/objutil.hpp> BEGIN_NCBI_SCOPE BEGIN_SCOPE(objects) USING_SCOPE(sequence); // ---------------------------------------------------------------------------- CStartItem::CStartItem( CSeq_entry_Handle seh ) // ---------------------------------------------------------------------------- : CCtrlItem(0) { x_SetDate( seh ); } // ---------------------------------------------------------------------------- void CStartItem::x_SetDate( CSeq_entry_Handle seh ) // ---------------------------------------------------------------------------- { if ( ! seh.IsSetDescr() ) { m_Date = CurrentTime().AsString("Y-M-D"); return; } const list< CRef< CSeqdesc > > lsd = seh.GetDescr().Get(); if ( lsd.empty() ) { m_Date = CurrentTime().AsString("Y-M-D"); return; } for ( list< CRef< CSeqdesc > >::const_iterator cit = lsd.begin(); cit != lsd.end(); ++cit ) { const CSeqdesc& sd = **cit; switch( sd.Which() ) { default: break; case CSeqdesc::e_Create_date: sd.GetCreate_date().GetDate( &m_Date, "%Y-%2M-%2D" ); break; case CSeqdesc::e_Update_date: sd.GetUpdate_date().GetDate( &m_Date, "%Y-%2M-%2D" ); return; } } if ( m_Date.empty() ) { m_Date = CurrentTime().AsString("Y-M-D"); } } END_SCOPE(objects) END_NCBI_SCOPE

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