NCBI C++ Toolkit Cross Reference

  C++/src/objects/seqfeat/Gene_ref.cpp


/* $Id: Gene_ref.cpp 67142 2015-04-21 14:47:55Z bollin@NCBI.NLM.NIH.GOV $ * =========================================================================== * * PUBLIC DOMAIN NOTICE * National Center for Biotechnology Information * * This software/database is a "United States Government Work" under the * terms of the United States Copyright Act. It was written as part of * the author's official duties as a United States Government employee and * thus cannot be copyrighted. This software/database is freely available * to the public for use. The National Library of Medicine and the U.S. * Government have not placed any restriction on its use or reproduction. * * Although all reasonable efforts have been taken to ensure the accuracy * and reliability of the software and data, the NLM and the U.S. * Government do not and cannot warrant the performance or results that * may be obtained by using this software or data. The NLM and the U.S. * Government disclaim all warranties, express or implied, including * warranties of performance, merchantability or fitness for any particular * purpose. * * Please cite the author in any work or product based on this material. * * =========================================================================== * * Author: ....... * * File Description: * ....... * * Remark: * This code was originally generated by application DATATOOL * using specifications from the ASN data definition file * 'seqfeat.asn'. */ // standard includes // generated includes #include <ncbi_pch.hpp> #include <objects/seqfeat/Gene_ref.hpp> #include <objects/general/Dbtag.hpp> // generated classes BEGIN_NCBI_SCOPE BEGIN_objects_SCOPE // namespace ncbi::objects:: // destructor CGene_ref::~CGene_ref(void) { } // Appends a label to "label" based on content void CGene_ref::GetLabel(string* label) const { if (IsSetLocus()) { *label += GetLocus(); } else if (IsSetDesc()) { *label += GetDesc(); } else if (IsSetLocus_tag()) { *label += GetLocus_tag(); } else if (IsSetSyn() && !GetSyn().empty()) { *label += *GetSyn().begin(); } else if (IsSetDb() && GetDb().size() > 0) { GetDb().front()->GetLabel(label); } else if (IsSetMaploc()) { *label += GetMaploc(); } } // Checks for an emtpy Gene-ref used for suppressing /gene by overlap bool CGene_ref::IsSuppressed(void) const { if ((IsSetLocus() && GetLocus().size() > 0) || (IsSetDesc() && GetDesc().size() > 0) || (IsSetSyn() && ! GetSyn().empty()) || (IsSetLocus_tag() && GetLocus_tag().size() > 0) || (IsSetDb() && GetDb().size() > 0) || (IsSetAllele() && GetAllele().size() > 0) || (IsSetMaploc() && GetMaploc().size() > 0)) { return false; } return true; } // Examines criteria to determine if this gene is referred to by another gene xref bool CGene_ref::RefersToSameGene(const CGene_ref& xref) const { if (IsSetLocus_tag() && !NStr::IsBlank(GetLocus_tag()) && xref.IsSetLocus_tag() && !NStr::IsBlank(xref.GetLocus_tag())) { return NStr::Equal(GetLocus_tag(), xref.GetLocus_tag()); } if (IsSetLocus() && !NStr::IsBlank(GetLocus()) && xref.IsSetLocus() && !NStr::IsBlank(xref.GetLocus())) { return NStr::Equal(GetLocus(), xref.GetLocus()); } if (IsSetSyn() && GetSyn().size() > 0 && !NStr::IsBlank(GetSyn().front()) && xref.IsSetSyn() && xref.GetSyn().size() > 0 && !NStr::IsBlank(xref.GetSyn().front())) { return NStr::Equal(GetSyn().front(), xref.GetSyn().front()); } return false; } END_objects_SCOPE // namespace ncbi::objects:: END_NCBI_SCOPE /* Original file checksum: lines: 61, chars: 1885, CRC32: 1a0ef8cd */

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