NCBI C++ Toolkit Cross Reference

  C++/src/objects/genomecoll/GC_Replicon.cpp


/* $Id: GC_Replicon.cpp 56418 2012-11-29 20:08:33Z smithrg $ * =========================================================================== * * PUBLIC DOMAIN NOTICE * National Center for Biotechnology Information * * This software/database is a "United States Government Work" under the * terms of the United States Copyright Act. It was written as part of * the author's official duties as a United States Government employee and * thus cannot be copyrighted. This software/database is freely available * to the public for use. The National Library of Medicine and the U.S. * Government have not placed any restriction on its use or reproduction. * * Although all reasonable efforts have been taken to ensure the accuracy * and reliability of the software and data, the NLM and the U.S. * Government do not and cannot warrant the performance or results that * may be obtained by using this software or data. The NLM and the U.S. * Government disclaim all warranties, express or implied, including * warranties of performance, merchantability or fitness for any particular * purpose. * * Please cite the author in any work or product based on this material. * * =========================================================================== * * Author: ....... * * File Description: * ....... * * Remark: * This code was originally generated by application DATATOOL * using the following specifications: * 'genome_collection.asn'. */ // standard includes #include <ncbi_pch.hpp> // generated includes #include <objects/general/User_field.hpp> #include <objects/general/User_object.hpp> #include <objects/genomecoll/GC_Replicon.hpp> #include <objects/genomecoll/GC_AssemblyUnit.hpp> #include <objects/genomecoll/GC_Assembly.hpp> // generated classes BEGIN_NCBI_SCOPE BEGIN_objects_SCOPE // namespace ncbi::objects:: // constructor CGC_Replicon::CGC_Replicon(void) : m_Assembly(NULL) , m_AssemblyUnit(NULL) { } // destructor CGC_Replicon::~CGC_Replicon(void) { } /// Access the assembly unit the sequence belongs to CConstRef<CGC_AssemblyUnit> CGC_Replicon::GetAssemblyUnit() const { return CConstRef<CGC_AssemblyUnit>(m_AssemblyUnit); } /// Access the assembly the sequence belongs to CConstRef<CGC_Assembly> CGC_Replicon::GetFullAssembly() const { return CConstRef<CGC_Assembly>(m_Assembly); } static CConstRef<CUser_object> x_GetMolLocTypeUserObj(const CGC_Replicon& rep) { const CGC_Sequence& seq = rep.GetSequence().GetSingle(); if (seq.IsSetDescr()) { ITERATE(CSeq_descr::Tdata, dit, seq.GetDescr().Get()) { if ((*dit)->IsUser()) { const CUser_object& uo = (*dit)->GetUser(); if ( uo.GetType().IsStr() && uo.GetType().GetStr() == "molecule-location-type") { return CConstRef<CUser_object>(&uo); } } } } return CConstRef<CUser_object>(); } string CGC_Replicon::GetMoleculeLocation() const { CConstRef<CUser_object> uo = x_GetMolLocTypeUserObj(*this); if (uo) { return uo->GetField("location").GetData().GetStr(); } return kEmptyStr; } string CGC_Replicon::GetMoleculeType() const { CConstRef<CUser_object> uo = x_GetMolLocTypeUserObj(*this); if (uo) { return uo->GetField("type").GetData().GetStr(); } return kEmptyStr; } string CGC_Replicon::GetMoleculeLabel() const { CConstRef<CUser_object> uo = x_GetMolLocTypeUserObj(*this); if (uo) { return uo->GetField("label").GetData().GetStr(); } return kEmptyStr; } END_objects_SCOPE // namespace ncbi::objects:: END_NCBI_SCOPE /* Original file checksum: lines: 57, chars: 1758, CRC32: 4b99539e */

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