Name Size Date (UTC) Description
folder Parent directory - 2021-09-19 21:39:18  
folder agp_validate/ - 2021-09-19 21:38:56  
folder agpconvert/ - 2021-09-19 21:38:58  
folder annotwriter/ - 2021-09-19 21:38:54  
folder asn2asn/ - 2021-09-19 21:38:56  
folder asn2fasta/ - 2021-09-19 21:38:55  
folder asn2flat/ - 2021-09-19 21:38:55  
folder asn_cache/ - 2021-09-19 21:38:53  
folder asn_cleanup/ - 2021-09-19 21:38:55  
folder asnval/ - 2021-09-19 21:38:56  
folder bdb_env_keeper/ - 2021-09-19 21:38:58  
folder biosample_chk/ - 2021-09-19 21:38:53  
folder blast/ - 2021-09-19 21:38:55  
folder blastdb/ - 2021-09-19 21:38:57  
folder blastfmt/ - 2021-09-19 21:38:58  
folder blastvdb/ - 2021-09-19 21:38:56  
folder bsdiff/ - 2021-09-19 21:38:53  
folder cn3d/ - 2021-09-19 21:38:55  
folder compart/ - 2021-09-19 21:38:58  
folder convert_seq/ - 2021-09-19 21:38:53  
folder dblb/ - 2021-09-19 21:38:58  
folder discrepancy_report/ - 2021-09-19 21:38:55  
folder dustmasker/ - 2021-09-19 21:38:57

ABSTRACT
DustMasker is a program that identifies and masks out low complexity parts of a genome using a new and improved DUST algorithm. The main advantages of the new algorithm are symmetry with respect to taking reverse complements, context insensitivity, and much better performance. The new DUST algorithm is described in [1]. Please cite this paper in any publication that uses DustMasker.


SEE ALSO: README

folder feat_import/ - 2021-09-19 21:38:58  
folder flat2asn/ - 2021-09-19 21:38:55  
folder formatguess/ - 2021-09-19 21:38:57  
folder gap_stats/ - 2021-09-19 21:38:58  
folder gff_deconcat/ - 2021-09-19 21:38:58  
folder gi2taxid/ - 2021-09-19 21:38:58  
folder grid/ - 2021-09-19 21:38:56  
folder hfilter/ - 2021-09-19 21:38:56  
folder hgvsreader/ - 2021-09-19 21:38:54  
folder id1_fetch/ - 2021-09-19 21:38:58  
folder id2_fetch/ - 2021-09-19 21:38:55  
folder idfetch/ - 2021-09-19 21:38:58  
folder idmapper/ - 2021-09-19 21:38:58  
folder igblast/ - 2021-09-19 21:38:53  
folder lds2_indexer/ - 2021-09-19 21:38:58  
folder magicblast/ - 2021-09-19 21:38:52  
folder multipattern/ - 2021-09-19 21:38:58  
folder multireader/ - 2021-09-19 21:38:55  
folder ncbi_encrypt/ - 2021-09-19 21:38:58  
folder netcache/ - 2021-09-19 21:38:54  
folder netschedule/ - 2021-09-19 21:38:57  
folder netstorage/ - 2021-09-19 21:38:58  
folder nmer_repeats/ - 2021-09-19 21:38:58  
folder nw_aligner/ - 2021-09-19 21:38:56  
folder objextract/ - 2021-09-19 21:38:58  
folder objmgr/ - 2021-09-19 21:38:57  
folder oligofar/ - 2021-09-19 21:38:59

oligoFAR 3.101 03-NOV-2009 1-NCBI
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! This file may be obsolete and will be removed - see man/oligofar.* for documentation !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
NAME oligoFAR version 3.101 - global alignment of single or paired short reads


SEE ALSO: README.txt

folder prt2fsm/ - 2021-09-19 21:38:56  
folder pub_report/ - 2021-09-19 21:38:58  
folder pubseq_gateway/ - 2021-09-19 21:38:54  
folder read_blast_result/ - 2021-09-19 21:38:57

Author: Azat Badretdinov (NCBI)
frameshift+ tool is intended *) to assist GenBank group to analyze bacterial genome submissions *) to annotate better submitted WGS projects


SEE ALSO: README

folder rmblastn/ - 2021-09-19 21:38:58  
folder segmasker/ - 2021-09-19 21:38:58  
folder speedtest/ - 2021-09-19 21:38:58  
folder splign/ - 2021-09-19 21:38:56  
folder split_cache/ - 2021-09-19 21:38:58  
folder srcchk/ - 2021-09-19 21:38:56  
folder ssub_fork/ - 2021-09-19 21:38:58  
folder streamtest/ - 2021-09-19 21:38:52  
folder sub_fuse/ - 2021-09-19 21:38:58  
folder table2asn/ - 2021-09-19 21:38:54  
folder tableval/ - 2021-09-19 21:38:58  
folder tls/ - 2021-09-19 21:38:58  
folder vecscreen/ - 2021-09-19 21:38:54  
folder wig2table/ - 2021-09-19 21:38:54  
folder winmasker/ - 2021-09-19 21:38:58

ABSTRACT
WindowMasker is a program that identifies and masks out highly repetitive DNA sequences and DNA sequences with low complexity in a genome using only the sequence of the genome itself. WindowMasker is described in [1]. Please cite this paper in any publication that uses WindowMasker.


SEE ALSO: README

CMakeLists.txt 885 2021-07-19 21:26:33  
Makefile.in 1025 2021-07-19 21:26:33