NCBI C++ Toolkit Cross Reference

  C++/include/objects/seqalign/Std_seg.hpp


/* $Id: Std_seg.hpp 47385 2010-10-04 15:26:24Z grichenk $ * =========================================================================== * * PUBLIC DOMAIN NOTICE * National Center for Biotechnology Information * * This software/database is a "United States Government Work" under the * terms of the United States Copyright Act. It was written as part of * the author's official duties as a United States Government employee and * thus cannot be copyrighted. This software/database is freely available * to the public for use. The National Library of Medicine and the U.S. * Government have not placed any restriction on its use or reproduction. * * Although all reasonable efforts have been taken to ensure the accuracy * and reliability of the software and data, the NLM and the U.S. * Government do not and cannot warrant the performance or results that * may be obtained by using this software or data. The NLM and the U.S. * Government disclaim all warranties, express or implied, including * warranties of performance, merchantability or fitness for any particular * purpose. * * Please cite the author in any work or product based on this material. * * =========================================================================== * * Author: ....... * * File Description: * ....... * * Remark: * This code was originally generated by application DATATOOL * using specifications from the data definition file * 'seqalign.asn'. */ #ifndef OBJECTS_SEQALIGN_STD_SEG_HPP #define OBJECTS_SEQALIGN_STD_SEG_HPP // generated includes #include <objects/seqalign/Std_seg_.hpp> #include <util/range.hpp> // generated classes BEGIN_NCBI_SCOPE BEGIN_objects_SCOPE // namespace ncbi::objects:: class CSeq_interval; class NCBI_SEQALIGN_EXPORT CStd_seg : public CStd_seg_Base { typedef CStd_seg_Base Tparent; public: // constructor CStd_seg(void); // destructor ~CStd_seg(void); // Validators TDim CheckNumRows(void) const; void Validate (bool full_test = false) const; // GetSeqRange TSignedSeqPos GetSeqStart(TDim row) const; TSignedSeqPos GetSeqStop (TDim row) const; CRange<TSignedSeqPos> GetSeqRange(TDim row) const; /// Swap two rows (changing *order*, not content) void SwapRows(TDim row1, TDim row2); /// Offset row's coords void OffsetRow(TDim row, TSignedSeqPos offset); /// @deprecated NCBI_DEPRECATED void RemapToLoc(TDim row, const CSeq_loc& dst_loc, bool ignore_strand = false); CRef<CSeq_loc> CreateRowSeq_loc(TDim row) const; private: // Prohibit copy constructor and assignment operator CStd_seg(const CStd_seg& value); CStd_seg& operator=(const CStd_seg& value); }; /////////////////// CStd_seg inline methods // constructor inline CStd_seg::CStd_seg(void) { } /////////////////// end of CStd_seg inline methods END_objects_SCOPE // namespace ncbi::objects:: END_NCBI_SCOPE #endif // OBJECTS_SEQALIGN_STD_SEG_HPP /* Original file checksum: lines: 93, chars: 2392, CRC32: 7f149965 */

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