NCBI C++ Toolkit Cross Reference

  C++/include/objects/entrezgene/Gene_commentary_.hpp


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/* $Id$ * =========================================================================== * * PUBLIC DOMAIN NOTICE * National Center for Biotechnology Information * * This software/database is a "United States Government Work" under the * terms of the United States Copyright Act. It was written as part of * the author's official duties as a United States Government employee and * thus cannot be copyrighted. This software/database is freely available * to the public for use. The National Library of Medicine and the U.S. * Government have not placed any restriction on its use or reproduction. * * Although all reasonable efforts have been taken to ensure the accuracy * and reliability of the software and data, the NLM and the U.S. * Government do not and cannot warrant the performance or results that * may be obtained by using this software or data. The NLM and the U.S. * Government disclaim all warranties, express or implied, including * warranties of performance, merchantability or fitness for any particular * purpose. * * Please cite the author in any work or product based on this material. * * =========================================================================== * */ /// @file Gene_commentary_.hpp /// Data storage class. /// /// This file was generated by application DATATOOL /// using the following specifications: /// 'entrezgene.asn'. /// /// ATTENTION: /// Don't edit or commit this file into CVS as this file will /// be overridden (by DATATOOL) without warning! #ifndef OBJECTS_ENTREZGENE_GENE_COMMENTARY_BASE_HPP #define OBJECTS_ENTREZGENE_GENE_COMMENTARY_BASE_HPP // standard includes #include <serial/serialbase.hpp> // generated includes #include <list> #include <string> BEGIN_NCBI_SCOPE #ifndef BEGIN_objects_SCOPE # define BEGIN_objects_SCOPE BEGIN_SCOPE(objects) # define END_objects_SCOPE END_SCOPE(objects) #endif BEGIN_objects_SCOPE // namespace ncbi::objects:: // forward declarations class CDate; class CGene_commentary; class COther_source; class CPub; class CRNA_ref; class CSeq_loc; class CXtra_Terms; // generated classes ///////////////////////////////////////////////////////////////////////////// class NCBI_ENTREZGENE_EXPORT CGene_commentary_Base : public CSerialObject { typedef CSerialObject Tparent; public: // constructor CGene_commentary_Base(void); // destructor virtual ~CGene_commentary_Base(void); // type info DECLARE_INTERNAL_TYPE_INFO(); /// type of Gene Commentary enum EType { eType_genomic = 1, eType_pre_RNA = 2, eType_mRNA = 3, eType_rRNA = 4, eType_tRNA = 5, eType_snRNA = 6, eType_scRNA = 7, eType_peptide = 8, eType_other_genetic = 9, eType_genomic_mRNA = 10, eType_cRNA = 11, eType_mature_peptide = 12, eType_pre_protein = 13, eType_miscRNA = 14, eType_snoRNA = 15, eType_property = 16, ///< used to display tag/value pair for this type label is used as property tag, text is used as property value, other fields are not used. eType_reference = 17, ///< currently not used eType_generif = 18, ///< to include generif in the main blob eType_phenotype = 19, ///< to display phenotype information eType_complex = 20, ///< used (but not limited) to identify resulting interaction complexes eType_compound = 21, ///< pubchem entities eType_ncRNA = 22, eType_gene_group = 23, ///< for relationship sets (such as pseudogene / parent gene) eType_assembly = 24, ///< for full assembly accession eType_assembly_unit = 25, ///< for the assembly unit corresponding to the refseq eType_c_region = 26, eType_d_segment = 27, eType_j_segment = 28, eType_v_segment = 29, eType_comment = 254, eType_other = 255 }; /// Access to EType's attributes (values, names) as defined in spec static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME(EType)(void); // types typedef int TType; typedef string THeading; typedef string TLabel; typedef string TText; typedef string TAccession; typedef int TVersion; typedef list< CRef< CXtra_Terms > > TXtra_properties; typedef list< CRef< CPub > > TRefs; typedef list< CRef< COther_source > > TSource; typedef list< CRef< CSeq_loc > > TGenomic_coords; typedef list< CRef< CSeq_loc > > TSeqs; typedef list< CRef< CGene_commentary > > TProducts; typedef list< CRef< CGene_commentary > > TProperties; typedef list< CRef< CGene_commentary > > TComment; typedef CDate TCreate_date; typedef CDate TUpdate_date; typedef CRNA_ref TRna; // getters // setters /// mandatory /// typedef int TType /// Check whether the Type data member has been assigned a value. bool IsSetType(void) const; /// Check whether it is safe or not to call GetType method. bool CanGetType(void) const; void ResetType(void); TType GetType(void) const; void SetType(TType value); TType& SetType(void); /// appears above text /// optional /// typedef string THeading /// Check whether the Heading data member has been assigned a value. bool IsSetHeading(void) const; /// Check whether it is safe or not to call GetHeading method. bool CanGetHeading(void) const; void ResetHeading(void); const THeading& GetHeading(void) const; void SetHeading(const THeading& value); THeading& SetHeading(void); /// occurs to left of text /// for protein and RNA types it is a name /// for property type it is a property tag /// optional /// typedef string TLabel /// Check whether the Label data member has been assigned a value. bool IsSetLabel(void) const; /// Check whether it is safe or not to call GetLabel method. bool CanGetLabel(void) const; void ResetLabel(void); const TLabel& GetLabel(void) const; void SetLabel(const TLabel& value); TLabel& SetLabel(void); /// block of text /// for property type it is a property value /// optional /// typedef string TText /// Check whether the Text data member has been assigned a value. bool IsSetText(void) const; /// Check whether it is safe or not to call GetText method. bool CanGetText(void) const; void ResetText(void); const TText& GetText(void) const; void SetText(const TText& value); TText& SetText(void); /// accession for the gi in the seqloc, see note 3 /// optional /// typedef string TAccession /// Check whether the Accession data member has been assigned a value. bool IsSetAccession(void) const; /// Check whether it is safe or not to call GetAccession method. bool CanGetAccession(void) const; void ResetAccession(void); const TAccession& GetAccession(void) const; void SetAccession(const TAccession& value); TAccession& SetAccession(void); /// version for the accession above /// optional /// typedef int TVersion /// Check whether the Version data member has been assigned a value. bool IsSetVersion(void) const; /// Check whether it is safe or not to call GetVersion method. bool CanGetVersion(void) const; void ResetVersion(void); TVersion GetVersion(void) const; void SetVersion(TVersion value); TVersion& SetVersion(void); /// see note 2 /// optional /// typedef list< CRef< CXtra_Terms > > TXtra_properties /// Check whether the Xtra_properties data member has been assigned a value. bool IsSetXtra_properties(void) const; /// Check whether it is safe or not to call GetXtra_properties method. bool CanGetXtra_properties(void) const; void ResetXtra_properties(void); const TXtra_properties& GetXtra_properties(void) const; TXtra_properties& SetXtra_properties(void); /// refs for this /// optional /// typedef list< CRef< CPub > > TRefs /// Check whether the Refs data member has been assigned a value. bool IsSetRefs(void) const; /// Check whether it is safe or not to call GetRefs method. bool CanGetRefs(void) const; void ResetRefs(void); const TRefs& GetRefs(void) const; TRefs& SetRefs(void); /// links and refs /// optional /// typedef list< CRef< COther_source > > TSource /// Check whether the Source data member has been assigned a value. bool IsSetSource(void) const; /// Check whether it is safe or not to call GetSource method. bool CanGetSource(void) const; void ResetSource(void); const TSource& GetSource(void) const; TSource& SetSource(void); /// referenced sequences in genomic coords /// optional /// typedef list< CRef< CSeq_loc > > TGenomic_coords /// Check whether the Genomic_coords data member has been assigned a value. bool IsSetGenomic_coords(void) const; /// Check whether it is safe or not to call GetGenomic_coords method. bool CanGetGenomic_coords(void) const; void ResetGenomic_coords(void); const TGenomic_coords& GetGenomic_coords(void) const; TGenomic_coords& SetGenomic_coords(void); /// referenced sequences in non-genomic coords /// optional /// typedef list< CRef< CSeq_loc > > TSeqs /// Check whether the Seqs data member has been assigned a value. bool IsSetSeqs(void) const; /// Check whether it is safe or not to call GetSeqs method. bool CanGetSeqs(void) const; void ResetSeqs(void); const TSeqs& GetSeqs(void) const; TSeqs& SetSeqs(void); /// optional /// typedef list< CRef< CGene_commentary > > TProducts /// Check whether the Products data member has been assigned a value. bool IsSetProducts(void) const; /// Check whether it is safe or not to call GetProducts method. bool CanGetProducts(void) const; void ResetProducts(void); const TProducts& GetProducts(void) const; TProducts& SetProducts(void); /// optional /// typedef list< CRef< CGene_commentary > > TProperties /// Check whether the Properties data member has been assigned a value. bool IsSetProperties(void) const; /// Check whether it is safe or not to call GetProperties method. bool CanGetProperties(void) const; void ResetProperties(void); const TProperties& GetProperties(void) const; TProperties& SetProperties(void); /// optional /// typedef list< CRef< CGene_commentary > > TComment /// Check whether the Comment data member has been assigned a value. bool IsSetComment(void) const; /// Check whether it is safe or not to call GetComment method. bool CanGetComment(void) const; void ResetComment(void); const TComment& GetComment(void) const; TComment& SetComment(void); /// optional /// typedef CDate TCreate_date /// Check whether the Create_date data member has been assigned a value. bool IsSetCreate_date(void) const; /// Check whether it is safe or not to call GetCreate_date method. bool CanGetCreate_date(void) const; void ResetCreate_date(void); const TCreate_date& GetCreate_date(void) const; void SetCreate_date(TCreate_date& value); TCreate_date& SetCreate_date(void); /// optional /// typedef CDate TUpdate_date /// Check whether the Update_date data member has been assigned a value. bool IsSetUpdate_date(void) const; /// Check whether it is safe or not to call GetUpdate_date method. bool CanGetUpdate_date(void) const; void ResetUpdate_date(void); const TUpdate_date& GetUpdate_date(void) const; void SetUpdate_date(TUpdate_date& value); TUpdate_date& SetUpdate_date(void); /// optional /// typedef CRNA_ref TRna /// Check whether the Rna data member has been assigned a value. bool IsSetRna(void) const; /// Check whether it is safe or not to call GetRna method. bool CanGetRna(void) const; void ResetRna(void); const TRna& GetRna(void) const; void SetRna(TRna& value); TRna& SetRna(void); /// Reset the whole object virtual void Reset(void); private: // Prohibit copy constructor and assignment operator CGene_commentary_Base(const CGene_commentary_Base&); CGene_commentary_Base& operator=(const CGene_commentary_Base&); // data Uint4 m_set_State[2]; int m_Type; string m_Heading; string m_Label; string m_Text; string m_Accession; int m_Version; list< CRef< CXtra_Terms > > m_Xtra_properties; list< CRef< CPub > > m_Refs; list< CRef< COther_source > > m_Source; list< CRef< CSeq_loc > > m_Genomic_coords; list< CRef< CSeq_loc > > m_Seqs; list< CRef< CGene_commentary > > m_Products; list< CRef< CGene_commentary > > m_Properties; list< CRef< CGene_commentary > > m_Comment; CRef< TCreate_date > m_Create_date; CRef< TUpdate_date > m_Update_date; CRef< TRna > m_Rna; }; /////////////////////////////////////////////////////////// ///////////////////// inline methods ////////////////////// /////////////////////////////////////////////////////////// inline bool CGene_commentary_Base::IsSetType(void) const { return ((m_set_State[0] & 0x3) != 0); } inline bool CGene_commentary_Base::CanGetType(void) const { return IsSetType(); } inline void CGene_commentary_Base::ResetType(void) { m_Type = (EType)(0); m_set_State[0] &= ~0x3; } inline CGene_commentary_Base::TType CGene_commentary_Base::GetType(void) const { if (!CanGetType()) { ThrowUnassigned(0); } return m_Type; } inline void CGene_commentary_Base::SetType(CGene_commentary_Base::TType value) { m_Type = value; m_set_State[0] |= 0x3; } inline CGene_commentary_Base::TType& CGene_commentary_Base::SetType(void) { #ifdef _DEBUG if (!IsSetType()) { memset(&m_Type,UnassignedByte(),sizeof(m_Type)); } #endif m_set_State[0] |= 0x1; return m_Type; } inline bool CGene_commentary_Base::IsSetHeading(void) const { return ((m_set_State[0] & 0xc) != 0); } inline bool CGene_commentary_Base::CanGetHeading(void) const { return IsSetHeading(); } inline const CGene_commentary_Base::THeading& CGene_commentary_Base::GetHeading(void) const { if (!CanGetHeading()) { ThrowUnassigned(1); } return m_Heading; } inline void CGene_commentary_Base::SetHeading(const CGene_commentary_Base::THeading& value) { m_Heading = value; m_set_State[0] |= 0xc; } inline CGene_commentary_Base::THeading& CGene_commentary_Base::SetHeading(void) { #ifdef _DEBUG if (!IsSetHeading()) { m_Heading = UnassignedString(); } #endif m_set_State[0] |= 0x4; return m_Heading; } inline bool CGene_commentary_Base::IsSetLabel(void) const { return ((m_set_State[0] & 0x30) != 0); } inline bool CGene_commentary_Base::CanGetLabel(void) const { return IsSetLabel(); } inline const CGene_commentary_Base::TLabel& CGene_commentary_Base::GetLabel(void) const { if (!CanGetLabel()) { ThrowUnassigned(2); } return m_Label; } inline void CGene_commentary_Base::SetLabel(const CGene_commentary_Base::TLabel& value) { m_Label = value; m_set_State[0] |= 0x30; } inline CGene_commentary_Base::TLabel& CGene_commentary_Base::SetLabel(void) { #ifdef _DEBUG if (!IsSetLabel()) { m_Label = UnassignedString(); } #endif m_set_State[0] |= 0x10; return m_Label; } inline bool CGene_commentary_Base::IsSetText(void) const { return ((m_set_State[0] & 0xc0) != 0); } inline bool CGene_commentary_Base::CanGetText(void) const { return IsSetText(); } inline const CGene_commentary_Base::TText& CGene_commentary_Base::GetText(void) const { if (!CanGetText()) { ThrowUnassigned(3); } return m_Text; } inline void CGene_commentary_Base::SetText(const CGene_commentary_Base::TText& value) { m_Text = value; m_set_State[0] |= 0xc0; } inline CGene_commentary_Base::TText& CGene_commentary_Base::SetText(void) { #ifdef _DEBUG if (!IsSetText()) { m_Text = UnassignedString(); } #endif m_set_State[0] |= 0x40; return m_Text; } inline bool CGene_commentary_Base::IsSetAccession(void) const { return ((m_set_State[0] & 0x300) != 0); } inline bool CGene_commentary_Base::CanGetAccession(void) const { return IsSetAccession(); } inline const CGene_commentary_Base::TAccession& CGene_commentary_Base::GetAccession(void) const { if (!CanGetAccession()) { ThrowUnassigned(4); } return m_Accession; } inline void CGene_commentary_Base::SetAccession(const CGene_commentary_Base::TAccession& value) { m_Accession = value; m_set_State[0] |= 0x300; } inline CGene_commentary_Base::TAccession& CGene_commentary_Base::SetAccession(void) { #ifdef _DEBUG if (!IsSetAccession()) { m_Accession = UnassignedString(); } #endif m_set_State[0] |= 0x100; return m_Accession; } inline bool CGene_commentary_Base::IsSetVersion(void) const { return ((m_set_State[0] & 0xc00) != 0); } inline bool CGene_commentary_Base::CanGetVersion(void) const { return IsSetVersion(); } inline void CGene_commentary_Base::ResetVersion(void) { m_Version = 0; m_set_State[0] &= ~0xc00; } inline CGene_commentary_Base::TVersion CGene_commentary_Base::GetVersion(void) const { if (!CanGetVersion()) { ThrowUnassigned(5); } return m_Version; } inline void CGene_commentary_Base::SetVersion(CGene_commentary_Base::TVersion value) { m_Version = value; m_set_State[0] |= 0xc00; } inline CGene_commentary_Base::TVersion& CGene_commentary_Base::SetVersion(void) { #ifdef _DEBUG if (!IsSetVersion()) { memset(&m_Version,UnassignedByte(),sizeof(m_Version)); } #endif m_set_State[0] |= 0x400; return m_Version; } inline bool CGene_commentary_Base::IsSetXtra_properties(void) const { return ((m_set_State[0] & 0x3000) != 0); } inline bool CGene_commentary_Base::CanGetXtra_properties(void) const { return true; } inline const CGene_commentary_Base::TXtra_properties& CGene_commentary_Base::GetXtra_properties(void) const { return m_Xtra_properties; } inline CGene_commentary_Base::TXtra_properties& CGene_commentary_Base::SetXtra_properties(void) { m_set_State[0] |= 0x1000; return m_Xtra_properties; } inline bool CGene_commentary_Base::IsSetRefs(void) const { return ((m_set_State[0] & 0xc000) != 0); } inline bool CGene_commentary_Base::CanGetRefs(void) const { return true; } inline const CGene_commentary_Base::TRefs& CGene_commentary_Base::GetRefs(void) const { return m_Refs; } inline CGene_commentary_Base::TRefs& CGene_commentary_Base::SetRefs(void) { m_set_State[0] |= 0x4000; return m_Refs; } inline bool CGene_commentary_Base::IsSetSource(void) const { return ((m_set_State[0] & 0x30000) != 0); } inline bool CGene_commentary_Base::CanGetSource(void) const { return true; } inline const CGene_commentary_Base::TSource& CGene_commentary_Base::GetSource(void) const { return m_Source; } inline CGene_commentary_Base::TSource& CGene_commentary_Base::SetSource(void) { m_set_State[0] |= 0x10000; return m_Source; } inline bool CGene_commentary_Base::IsSetGenomic_coords(void) const { return ((m_set_State[0] & 0xc0000) != 0); } inline bool CGene_commentary_Base::CanGetGenomic_coords(void) const { return true; } inline const CGene_commentary_Base::TGenomic_coords& CGene_commentary_Base::GetGenomic_coords(void) const { return m_Genomic_coords; } inline CGene_commentary_Base::TGenomic_coords& CGene_commentary_Base::SetGenomic_coords(void) { m_set_State[0] |= 0x40000; return m_Genomic_coords; } inline bool CGene_commentary_Base::IsSetSeqs(void) const { return ((m_set_State[0] & 0x300000) != 0); } inline bool CGene_commentary_Base::CanGetSeqs(void) const { return true; } inline const CGene_commentary_Base::TSeqs& CGene_commentary_Base::GetSeqs(void) const { return m_Seqs; } inline CGene_commentary_Base::TSeqs& CGene_commentary_Base::SetSeqs(void) { m_set_State[0] |= 0x100000; return m_Seqs; } inline bool CGene_commentary_Base::IsSetProducts(void) const { return ((m_set_State[0] & 0xc00000) != 0); } inline bool CGene_commentary_Base::CanGetProducts(void) const { return true; } inline const CGene_commentary_Base::TProducts& CGene_commentary_Base::GetProducts(void) const { return m_Products; } inline CGene_commentary_Base::TProducts& CGene_commentary_Base::SetProducts(void) { m_set_State[0] |= 0x400000; return m_Products; } inline bool CGene_commentary_Base::IsSetProperties(void) const { return ((m_set_State[0] & 0x3000000) != 0); } inline bool CGene_commentary_Base::CanGetProperties(void) const { return true; } inline const CGene_commentary_Base::TProperties& CGene_commentary_Base::GetProperties(void) const { return m_Properties; } inline CGene_commentary_Base::TProperties& CGene_commentary_Base::SetProperties(void) { m_set_State[0] |= 0x1000000; return m_Properties; } inline bool CGene_commentary_Base::IsSetComment(void) const { return ((m_set_State[0] & 0xc000000) != 0); } inline bool CGene_commentary_Base::CanGetComment(void) const { return true; } inline const CGene_commentary_Base::TComment& CGene_commentary_Base::GetComment(void) const { return m_Comment; } inline CGene_commentary_Base::TComment& CGene_commentary_Base::SetComment(void) { m_set_State[0] |= 0x4000000; return m_Comment; } inline bool CGene_commentary_Base::IsSetCreate_date(void) const { return m_Create_date.NotEmpty(); } inline bool CGene_commentary_Base::CanGetCreate_date(void) const { return IsSetCreate_date(); } inline const CGene_commentary_Base::TCreate_date& CGene_commentary_Base::GetCreate_date(void) const { if (!CanGetCreate_date()) { ThrowUnassigned(14); } return (*m_Create_date); } inline bool CGene_commentary_Base::IsSetUpdate_date(void) const { return m_Update_date.NotEmpty(); } inline bool CGene_commentary_Base::CanGetUpdate_date(void) const { return IsSetUpdate_date(); } inline const CGene_commentary_Base::TUpdate_date& CGene_commentary_Base::GetUpdate_date(void) const { if (!CanGetUpdate_date()) { ThrowUnassigned(15); } return (*m_Update_date); } inline bool CGene_commentary_Base::IsSetRna(void) const { return m_Rna.NotEmpty(); } inline bool CGene_commentary_Base::CanGetRna(void) const { return IsSetRna(); } inline const CGene_commentary_Base::TRna& CGene_commentary_Base::GetRna(void) const { if (!CanGetRna()) { ThrowUnassigned(16); } return (*m_Rna); } /////////////////////////////////////////////////////////// ////////////////// end of inline methods ////////////////// /////////////////////////////////////////////////////////// END_objects_SCOPE // namespace ncbi::objects:: END_NCBI_SCOPE #endif // OBJECTS_ENTREZGENE_GENE_COMMENTARY_BASE_HPP

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