NCBI C++ Toolkit Cross Reference


/* $Id: modify_structured_comment.hpp 33868 2015-09-24 14:21:58Z asztalos $ * =========================================================================== * * PUBLIC DOMAIN NOTICE * National Center for Biotechnology Information * * This software/database is a "United States Government Work" under the * terms of the United States Copyright Act. It was written as part of * the author's official duties as a United States Government employee and * thus cannot be copyrighted. This software/database is freely available * to the public for use. The National Library of Medicine and the U.S. * Government have not placed any restriction on its use or reproduction. * * Although all reasonable efforts have been taken to ensure the accuracy * and reliability of the software and data, the NLM and the U.S. * Government do not and cannot warrant the performance or results that * may be obtained by using this software or data. The NLM and the U.S. * Government disclaim all warranties, express or implied, including * warranties of performance, merchantability or fitness for any particular * purpose. * * Please cite the author in any work or product based on this material. * * =========================================================================== * * * Authors: Igor Filippov */ #ifndef _MODIFY_STRUCTURED_COMMENT_H_ #define _MODIFY_STRUCTURED_COMMENT_H_ #include <corelib/ncbistd.hpp> #include <corelib/ncbiobj.hpp> #include <objmgr/seq_entry_handle.hpp> #include <objects/general/User_object.hpp> #include <objects/general/User_field.hpp> #include <objects/valid/Comment_set.hpp> #include <objects/valid/Comment_rule.hpp> #include <gui/objutils/cmd_composite.hpp> #include <objects/misc/sequence_macros.hpp> #include <objmgr/feat_ci.hpp> BEGIN_NCBI_SCOPE using namespace objects; class CModifyStructuredComment { public: bool ApplyToUserObject(CUser_object& user); void ApplyToCSeq_entry (CSeq_entry_Handle tse, const CSeq_entry& se, CCmdComposite* composite); void apply_to_seq_and_feat(CSeq_entry_Handle tse, CCmdComposite* composite); bool apply(CSeq_entry_Handle tse, ICommandProccessor* cmdProcessor, string title); private: string m_Field; wxString m_FindStr; }; class CReorderStructuredComment { public: bool apply(objects::CSeq_entry_Handle tse, ICommandProccessor* cmdProcessor, string title); void ApplyToCSeq_entry_user (objects::CSeq_entry_Handle tse, const CSeq_entry& se, CCmdComposite* composite); void reorder_comment_by_rule(const CUser_object& user, const CComment_rule* rule, CCmdComposite* composite); private: CConstRef<CComment_set> m_Rules; }; END_NCBI_SCOPE #endif // _MODIFY_STRUCTURED_COMMENT_H_

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