NCBI C++ Toolkit Cross Reference

  C++/include/gui/packages/pkg_sequence_edit/modify_feature_id.hpp


/* $Id: modify_feature_id.hpp 33178 2015-06-09 17:02:45Z asztalos $ * =========================================================================== * * PUBLIC DOMAIN NOTICE * National Center for Biotechnology Information * * This software/database is a "United States Government Work" under the * terms of the United States Copyright Act. It was written as part of * the author's official duties as a United States Government employee and * thus cannot be copyrighted. This software/database is freely available * to the public for use. The National Library of Medicine and the U.S. * Government have not placed any restriction on its use or reproduction. * * Although all reasonable efforts have been taken to ensure the accuracy * and reliability of the software and data, the NLM and the U.S. * Government do not and cannot warrant the performance or results that * may be obtained by using this software or data. The NLM and the U.S. * Government disclaim all warranties, express or implied, including * warranties of performance, merchantability or fitness for any particular * purpose. * * Please cite the author in any work or product based on this material. * * =========================================================================== * * * Authors: Igor Filippov */ #ifndef _MODIFY_FEATURE_ID_H_ #define _MODIFY_FEATURE_ID_H_ #include <corelib/ncbistd.hpp> #include <corelib/ncbiobj.hpp> #include <objects/general/Object_id.hpp> #include <objects/misc/sequence_macros.hpp> #include <objmgr/util/feature.hpp> #include <objmgr/seq_entry_handle.hpp> #include <gui/objutils/cmd_composite.hpp> BEGIN_NCBI_SCOPE class CAssignFeatureId { public: bool apply(objects::CSeq_entry_Handle tse, ICommandProccessor* cmdProcessor, string title); static objects::CObject_id::TId s_FindHighestFeatureId(const objects::CSeq_entry_Handle& entry); private: bool AssignHighestFeatureId(const objects::CSeq_entry_Handle& entry, objects::CObject_id::TId& feat_id, CCmdComposite* composite); }; class CClearFeatureId { public: bool apply(objects::CSeq_entry_Handle tse, ICommandProccessor* cmdProcessor, string title); private: void ClearFeatureIds(const objects::CSeq_entry_Handle& entry, CCmdComposite* composite); }; class CReassignFeatureId { public: bool apply(objects::CSeq_entry_Handle tse, ICommandProccessor* cmdProcessor, string title); private: void MakeIDPairs(const objects::CSeq_entry_Handle& entry, map<int,int> &id_pairs); void ReassignFeatureIds(const objects::CSeq_entry_Handle& entry, CCmdComposite* composite, map<int,int> &id_pairs); }; class CUniqifyFeatureId { public: bool apply(objects::CSeq_entry_Handle tse, ICommandProccessor* cmdProcessor, string title); private: void ApplyToSeqInSet(objects::CSeq_entry_Handle tse, const objects::CBioseq_set_Handle& bioset, CCmdComposite* composite); void UpdateFeatureIds(const objects::CSeq_entry_Handle& entry, CCmdComposite* composite, int offset); }; END_NCBI_SCOPE #endif // _MODIFY_FEATURE_ID_H_

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