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Definitions for TTaxId

Type	Member of	File	Line
typedef	ENull	/include/corelib/ncbimisc.hpp	1046
typedef	ENull	/include/corelib/ncbimisc.hpp	1048
typedef	CSelectionEvent	/include/gui/objutils/obj_event.hpp	78
typedef	CTaxIdSelSet	/include/gui/objutils/taxid_sel_set.hpp	51
typedef	CExchangeSet_Base::C_SourceDatabase::C_Attlist	/include/objects/docsum/ExchangeSet_.hpp	226
typedef	CRs_Base::C_Attlist	/include/objects/docsum/Rs_.hpp	145
typedef	CAsnIndex	/include/objtools/data_loaders/asn_cache/asn_index.hpp	63
typedef	CGBInfoManager	/include/objtools/data_loaders/genbank/impl/request_result.hpp	310
typedef	CReaderRequestResult	/include/objtools/data_loaders/genbank/impl/request_result.hpp	1035
typedef	CBioseqInfoRecord	/include/objtools/pubseq_gateway/impl/cassandra/bioseq_info/record.hpp	65
typedef	ITaxonomyResolver	/include/objtools/readers/rm_reader.hpp	60
typedef	IRepeat	/include/objtools/readers/rm_reader.hpp	90

12 declarations in 9 files.

References to TTaxId

File	Line
/include/algo/blast/api/blast_options_builder.hpp	129 135 331 334
/include/algo/blast/api/remote_blast.hpp	490 491 842 843
/include/algo/phy_tree/bio_tree_conv.hpp	616 618 737 786
/include/algo/sequence/align_group.hpp	65 69 70 145 148
/include/algo/structure/cd_utils/cuPrefTaxNodes.hpp	54 84 109 114 114 115 115 122 123 127 137 138 138 153 153 159
/include/algo/structure/cd_utils/cuSequence.hpp	53 74
/include/algo/structure/cd_utils/cuTaxClient.hpp	65 66 68 69 76 80 81 82 85 88 88 90 90 94 94 103 103 108 109 109 109
/include/algo/structure/cd_utils/cuTaxNRCriteria.hpp	53 60 98 110 124 124 129 159 186
/include/algo/structure/cd_utils/cuTaxTree.hpp	50 67 111 129 132
/include/corelib/ncbimisc.hpp	1046 1048 1106 1107 1108 1111
/include/gui/objutils/link_utils.hpp	126
/include/gui/objutils/obj_event.hpp	78 78 117
/include/gui/objutils/taxid_sel_set.hpp	51 59 60 62
/include/gui/widgets/tax_tree/tax_tree_ds.hpp	66
/include/objects/blastdb/Blast_def_line.hpp	65
/include/objects/blastdb/Blast_def_line_.hpp	80
/include/objects/blastxml2/HitDescr_.hpp	83
/include/objects/docsum/ExchangeSet_.hpp	226 253 254 255 1109 1118 1125
/include/objects/docsum/Rs_.hpp	145 268 269 270 2402 2411 2418
/include/objects/general/Dbtag.hpp	302
/include/objects/genomecoll/GC_Assembly.hpp	90
/include/objects/seq/Bioseq.hpp	124
/include/objects/seqfeat/Org_ref.hpp	106 109 109
/include/objects/taxon1/Taxon1_name_.hpp	73
/include/objects/taxon1/Taxon1_resp_.hpp	147 159 163
/include/objects/taxon1/local_taxon.hpp	52 84 92
/include/objects/taxon1/taxon1.hpp	70 103 111 150 195 205 216 236 256 256 274 274 282 282 290 290 332 332 333 333 340 411 411 411 420 428 455 465 488 498 507 533 543 545 547 560 569 575 588 616 629
/include/objects/taxon3/itaxon3.hpp	99
/include/objects/taxon3/taxon3.hpp	85
/include/objmgr/data_loader.hpp	331 389
/include/objmgr/impl/bioseq_info.hpp	225
/include/objmgr/impl/data_source.hpp	248 263
/include/objmgr/impl/scope_impl.hpp	342 369
/include/objmgr/scope.hpp	483 484 567
/include/objmgr/util/indexer.hpp	532 719
/include/objmgr/util/sequence.hpp	681 723
/include/objtools/align_format/align_format_util.hpp	402 415 436 903 957 1280 1314 1499 1530
/include/objtools/align_format/showalign.hpp	519 732
/include/objtools/align_format/showdefline.hpp	108 126 132
/include/objtools/align_format/tabular.hpp	350 355
/include/objtools/align_format/taxFormat.hpp	130 161 174 186 191 194 247 253 258 264 270 277 286 328 352
/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp	146 148 161 162
/include/objtools/blast/gene_info_writer/gene_info_writer.hpp	97 112 276
/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp	86 86 91 91 95 100
/include/objtools/blast/seqdb_reader/impl/seqdbtax.hpp	72
/include/objtools/blast/seqdb_reader/seqdb.hpp	550 572 592 612 623 1218 1505 1509 1511 1519 1525
/include/objtools/blast/seqdb_reader/seqdbcommon.hpp	222 489 523 525 1106 1111 1132 1849 1855
/include/objtools/blast/seqdb_writer/taxid_set.hpp	49 51 64 67 68 74
/include/objtools/blast/seqdb_writer/writedb_lmdb.hpp	156 172 174
/include/objtools/data_loaders/asn_cache/asn_cache_loader.hpp	79
/include/objtools/data_loaders/asn_cache/asn_index.hpp	63 88 98 109 168 187
/include/objtools/data_loaders/blastdb/bdbloader.hpp	110
/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp	131
/include/objtools/data_loaders/genbank/gbnative.hpp	128
/include/objtools/data_loaders/genbank/impl/dispatcher.hpp	112
/include/objtools/data_loaders/genbank/impl/psg_loader_impl.hpp	65 138 139 283
/include/objtools/data_loaders/genbank/impl/request_result.hpp	310 310 311 1035 1035 1116
/include/objtools/data_loaders/genbank/psg_loader.hpp	125
/include/objtools/data_loaders/genbank/reader.hpp	128 230
/include/objtools/format/flat_file_config.hpp	89 107
/include/objtools/format/flat_file_html.hpp	59
/include/objtools/format/items/source_item.hpp	61
/include/objtools/huge_asn/huge_asn_loader.hpp	72
/include/objtools/pubseq_gateway/client/psg_client.hpp	896 1048
/include/objtools/pubseq_gateway/impl/cassandra/bioseq_info/record.hpp	65 178 268 301
/include/objtools/pubseq_gateway/impl/ipg/ipg_report_entry.hpp	120 299 431
/include/objtools/readers/rm_reader.hpp	60 68 73 90 90 91 109 130 140 370 440 445
/include/objtools/validator/tax_validation_and_cleanup.hpp	116 147 168 248 360 382
/include/objtools/validator/validerror_imp.hpp	262
/include/sra/data_loaders/bam/bamloader.hpp	129
/include/sra/data_loaders/bam/impl/bamloader_impl.hpp	301
/include/sra/data_loaders/csra/csraloader.hpp	148
/include/sra/data_loaders/csra/impl/csraloader_impl.hpp	564 565
/include/sra/data_loaders/wgs/impl/wgsloader_impl.hpp	195 196
/include/sra/data_loaders/wgs/wgsloader.hpp	105
/include/sra/readers/sra/wgsread.hpp	415 639 977 1450
/src/algo/align/util/score_lookup.cpp	1279
/src/algo/align/util/tabular_fmt.cpp	1678
/src/algo/blast/api/blast_options_builder.cpp	405 485 799 809
/src/algo/blast/api/remote_blast.cpp	2040 2046
/src/algo/blast/api/search_strategy.cpp	460 463 488 491
/src/algo/blast/blastinput/blast_args.cpp	2425 2431 2439
/src/algo/blast/format/blastxml2_format.cpp	381
/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp	160
/src/algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test.cpp	305 325 336 340 362 400 406 412 439 451
/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp	1756 1810 1953 2024 2978 2979 4153 4355 4376 4401 4427 4447 4520 4528 4535 4547 4554
/src/algo/phy_tree/phytree_format/phytree_format.cpp	945
/src/algo/phy_tree/test/test_biotree.cpp	266 291 294
/src/algo/seqqa/prot_prod_tests.cpp	146 149 197
/src/algo/sequence/align_group.cpp	69 112 468 477 479 500 530
/src/algo/structure/cd_utils/cuCD.cpp	641 656 674
/src/algo/structure/cd_utils/cuCdUpdater.cpp	1285
/src/algo/structure/cd_utils/cuPrefTaxNodes.cpp	66 164 180 180 208 210 230 258 264 264 270 270 297 322
/src/algo/structure/cd_utils/cuSeqTreeAPI.cpp	268
/src/algo/structure/cd_utils/cuSequence.cpp	139 142
/src/algo/structure/cd_utils/cuTaxClient.cpp	101 137 138 145 162 177 179 227 240 262 262 264 270 272 276 286 286 289 295 305 305 305 314 314 316 317 329 329 333 334 338
/src/algo/structure/cd_utils/cuTaxNRCriteria.cpp	122 122 132 151 153 171 180
/src/algo/structure/cd_utils/cuTaxTree.cpp	64 265 297 328 383 385 399 414
/src/app/agp_validate/AltValidator.cpp	149 149 153 166 166 176 177 180 218 238 282 467
/src/app/agp_validate/AltValidator.hpp	89 92 92 93 93 107 122 127 127
/src/app/agpconvert/agpconvert.cpp	294 295 798 805 813
/src/app/asn_cache/prime_cache.cpp	237 238 568 1099 1101
/src/app/asn_cache/read_index_speed.cpp	160
/src/app/asn_cache/sub_cache_create.cpp	206
/src/app/blast/blast_app_util.cpp	476 477 491 492
/src/app/blastdb/blastdb_convert.cpp	432
/src/app/blastdb/blastdbcmd.cpp	101 350 356 702 708 726
/src/app/blastdb/blastdbcp.cpp	290
/src/app/blastdb/makeblastdb.cpp	362 530 1053
/src/app/blastdb/makeclusterdb.cpp	273
/src/app/blastdb/makeprofiledb.cpp	1462
/src/app/gi2taxid/gi2taxid.cpp	140
/src/app/magicblast/magicblast_util.cpp	874 881
/src/app/objmgr/test/objmgr_perf_test.cpp	820
/src/app/tableval/col_validator.cpp	162 162
/src/gui/objutils/label.cpp	3135 3151
/src/gui/objutils/link_utils.cpp	84 92 245 253 697 810
/src/gui/objutils/macro_fn_lookup.cpp	244
/src/gui/objutils/obj_event.cpp	306
/src/gui/objutils/table_data_biotreecontainer.cpp	482 482 685 685
/src/gui/packages/pkg_alignment/phy_tree_view.cpp	1185 1185 1207 1207
/src/gui/widgets/seq_graphic/six_frames_trans_track.cpp	284
/src/gui/widgets/tax_tree/tax_tree.cpp	81
/src/gui/widgets/tax_tree/tax_tree_ds.cpp	57 58 111
/src/objects/general/Dbtag.cpp	88 515
/src/objects/genomecoll/GC_Assembly.cpp	196 205
/src/objects/seq/Bioseq.cpp	177 181
/src/objects/seqfeat/BioSource.cpp	819
/src/objects/seqfeat/Org_ref.cpp	71 92 93 95 282 283
/src/objects/taxon1/cache.cpp	103 114 181 203
/src/objects/taxon1/cache.hpp	98 99 100 101 191
/src/objects/taxon1/local_taxon.cpp	216 339 375 410
/src/objects/taxon1/taxon1.cpp	230 488 522 529 547 559 563 594 629 704 760 761 788 789 842 843 874 875 941 942 961 962 992 1219 1220 1220 1222 1248 1293 1371 1405 1555 1566 1574 1600 1639 1746 1768 1821 1874 1929 2196 2272 2296 2339 2390
/src/objects/taxon1/unit_test/taxon1_unit_test.cpp	545
/src/objects/taxon3/taxon3.cpp	234 246
/src/objmgr/bioseq_info.cpp	1256
/src/objmgr/data_loader.cpp	422 645
/src/objmgr/data_source.cpp	1612 1614
/src/objmgr/scope.cpp	474 480
/src/objmgr/scope_impl.cpp	2880 2906 2917
/src/objmgr/util/indexer.cpp	2536
/src/objmgr/util/sequence.cpp	171 274
/src/objtools/align_format/align_format_util.cpp	1085 1087 1806 2532 2668 2733 4359 4368 4551
/src/objtools/align_format/seqalignfilter.cpp	665 688 699 754
/src/objtools/align_format/showalign.cpp	985 1232 2216
/src/objtools/align_format/tabular.cpp	282 651 659 673
/src/objtools/align_format/taxFormat.cpp	135 238 241 328 340 353 375 391 457 487 492 574 575 584 592 609 610 636 644 649 677 702 721 721 723 726 742 746 756 758 763 771 785 798 816 882 934 966 975 1005 1007 1044
/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp	391 397 408 420 424 425 444 456 460 461 480 516 742 755 760 771 776 864 891 902
/src/objtools/blast/gene_info_writer/gene_info_writer.cpp	64 157 459
/src/objtools/blast/seqdb_reader/seqdb.cpp	257 262 267 442 446 459 468 475 480 494 1105 1743 1752 1758
/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp	558 571 591 591 603 688 695 709 709 715 718 737 742
/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp	257 335
/src/objtools/blast/seqdb_reader/seqdbimpl.cpp	449 485 510 527 564 1293 1315 1343 1622 2716
/src/objtools/blast/seqdb_reader/seqdbimpl.hpp	247 267 287 293 313 732 1073 1077 1079 1085
/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp	165 165 171 171 177 182 315 317 318 335 337 338 356 358 369 377 387
/src/objtools/blast/seqdb_reader/seqdblmdbset.hpp	103 103 105 105 107 109 174 176 178 180
/src/objtools/blast/seqdb_reader/seqdboidlist.cpp	663 667 677 683 685 695 697
/src/objtools/blast/seqdb_reader/seqdbtax.cpp	64 219 230 231 240
/src/objtools/blast/seqdb_reader/seqdbvol.cpp	1112 1892 1916 1938
/src/objtools/blast/seqdb_writer/taxid_set.cpp	43 67 67 77 84 86 100
/src/objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test.cpp	75 77 125 127 173 175 223 225
/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp	2531 2556 2566 2593 2603 2628 3535
/src/objtools/blast/seqdb_writer/writedb_impl.cpp	602 771 1583
/src/objtools/blast/seqdb_writer/writedb_impl.hpp	544 625
/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp	446 456 509 523 551
/src/objtools/data_loaders/asn_cache/asn_cache_loader.cpp	211
/src/objtools/data_loaders/asn_cache/asn_index.cpp	120 122 176 208 243 254 262 270 277
/src/objtools/data_loaders/blastdb/bdbloader.cpp	292
/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp	51 54 59
/src/objtools/data_loaders/blastdb/local_blastdb_adapter.hpp	72
/src/objtools/data_loaders/blastdb/unit_test/local_dataloader_test.cpp	92 272
/src/objtools/data_loaders/genbank/cache/reader_cache.cpp	846
/src/objtools/data_loaders/genbank/dispatcher.cpp	932
/src/objtools/data_loaders/genbank/gbnative.cpp	625 635
/src/objtools/data_loaders/genbank/psg_loader.cpp	351
/src/objtools/data_loaders/genbank/psg_loader_impl.cpp	616 1347 1355 1379 3852 3890 3894 3930
/src/objtools/data_loaders/genbank/reader.cpp	554 1274
/src/objtools/data_loaders/genbank/reader_id2_base.cpp	2924
/src/objtools/data_loaders/genbank/request_result.cpp	1520
/src/objtools/data_loaders/genbank/test/bulkinfo_tester.cpp	521 557
/src/objtools/edit/autodef_with_tax.cpp	119
/src/objtools/edit/remote_updater.cpp	430
/src/objtools/edit/source_edit.cpp	190 191
/src/objtools/flatfile/ftablock.h	227
/src/objtools/flatfile/ftanet.cpp	806 848
/src/objtools/flatfile/ftanet.h	48
/src/objtools/flatfile/sp_ascii.cpp	446 1426 1433 2567
/src/objtools/format/flat_file_config.cpp	1139
/src/objtools/format/flat_file_html.cpp	132
/src/objtools/huge_asn/huge_asn_loader.cpp	211 241
/src/objtools/pubseq_gateway/client/psg_client.cpp	1231 1384
/src/objtools/readers/descr_mod_apply.cpp	542 544
/src/objtools/readers/rm_reader.cpp	194 376 544
/src/objtools/readers/source_mod_parser.cpp	1158
/src/objtools/validator/tax_validation_and_cleanup.cpp	158 719 726 881 1093 1095 1164 1165 1580
/src/objtools/validator/unit_test/unit_test_validator.cpp	22731 22745
/src/objtools/validator/unit_test/unit_test_validator.hpp	120
/src/objtools/validator/utilities.cpp	2162
/src/objtools/validator/valid_biosource.cpp	2752
/src/sra/data_loaders/bam/bamloader.cpp	343
/src/sra/data_loaders/bam/bamloader_impl.cpp	704
/src/sra/data_loaders/csra/csraloader.cpp	469
/src/sra/data_loaders/csra/csraloader_impl.cpp	1043 1051
/src/sra/data_loaders/csra/test/test_csra_loader_mt.cpp	384
/src/sra/data_loaders/wgs/wgsloader.cpp	281
/src/sra/data_loaders/wgs/wgsloader_impl.cpp	1283 1292
/src/sra/readers/sra/wgsread.cpp	2280 4393 4405 7262

903 references in 207 files.