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Definitions for GetInst

Type	Member of	File	Line
function prototype or declaration	CSysPath	/include/gui/widgets/wx/sys_path.hpp	107
function prototype or declaration	CBioseq_Base	/include/objects/seq/Bioseq_.hpp	131
function definition	CBioseq_Base	/include/objects/seq/Bioseq_.hpp	229
function prototype or declaration	CSeqEdit_Cmd_ChangeSeqAttr_Base::C_Data	/include/objects/seqedit/SeqEdit_Cmd_ChangeSeqAttr_.hpp	154
function prototype or declaration	CBioseq_Handle	/include/objmgr/bioseq_handle.hpp	214
function prototype or declaration	CBioseq_Info	/include/objmgr/impl/bioseq_info.hpp	112
function prototype or declaration		/src/algo/blast/unit_tests/api/querydata_unit_test.cpp	410
function definition	CSysPath	/src/gui/widgets/wx/sys_path.cpp	56
function definition	CSeqEdit_Cmd_ChangeSeqAttr_Base::C_Data	/src/objects/seqedit/SeqEdit_Cmd_ChangeSeqAttr_.cpp	141
function definition	CBioseq_Handle	/src/objmgr/bioseq_handle.cpp	207
function definition	CBioseq_Info	/src/objmgr/bioseq_info.cpp	541
function prototype or declaration		/src/objtools/test/objmgr/id64_unit_test.cpp	1300
function prototype or declaration		/src/objtools/test/objmgr/id_unit_test.cpp	2165

13 declarations in 12 files.

References to GetInst

File	Line
/include/gui/objutils/descriptor_change.hpp	153 168
/include/gui/widgets/seq_graphic/alngraphic_ds.hpp	115 146
/include/gui/widgets/wx/sys_path.hpp	107
/include/objects/seq/Bioseq_.hpp	131 229
/include/objects/seqedit/SeqEdit_Cmd_ChangeSeqAttr_.hpp	154
/include/objmgr/bioseq_handle.hpp	214
/include/objmgr/impl/bioseq_edit_commands.hpp	218
/include/objmgr/impl/bioseq_info.hpp	112
/src/algo/align/ngalign/unordered_spliter.cpp	110 133 213 317 369
/src/algo/align/util/patch_sequence.cpp	137 267 473
/src/algo/blast/api/bioseq_extract_data_priv.cpp	317 334 339 422 440 446
/src/algo/blast/api/msa_pssm_input.cpp	153
/src/algo/blast/api/remote_blast.cpp	1336
/src/algo/blast/api/search_strategy.cpp	600
/src/algo/blast/blast_sra_input/blast_sra_input.cpp	233
/src/algo/blast/blastinput/blast_asn1_input.cpp	110 118
/src/algo/blast/blastinput/blast_fasta_input.cpp	412
/src/algo/blast/blastinput/blast_input.cpp	284
/src/algo/blast/blastinput/blast_input_aux.cpp	308 308 311 313 315 319
/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp	451 518 519 988 989 990 1065 1066 1067 1125 1126 1128 1305 1306 1307 1366 1367 1368 1571 1572 1573 1725 1726 1727 1799 1800 1801 1873 1874 1875 1919 1920 1921 2565 2566 2567 2633 2705 2706 2707 2750 2752
/src/algo/blast/format/blast_format.cpp	1346 1347
/src/algo/blast/unit_tests/api/querydata_unit_test.cpp	149 410
/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp	870
/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp	111 113 116 117 118 277 371
/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp	1032 4005
/src/algo/gnomon/asn1.cpp	1140 1168
/src/algo/id_mapper/id_mapper.cpp	1544
/src/algo/ms/omssa/pepxml.cpp	526
/src/algo/sequence/gene_model.cpp	1704 4335 4430 4431
/src/algo/structure/cd_utils/cuBlast2Seq.cpp	406 432 451
/src/algo/structure/cd_utils/cuPssmScorer.cpp	86
/src/algo/structure/cd_utils/cuSeqAnnotFromFasta.cpp	632
/src/algo/structure/cd_utils/cuSequence.cpp	220 221 222 223 246 247 291 300 302 317 319 360 361 382
/src/algo/structure/struct_util/su_sequence_set.cpp	81 82 83 84 217 217 220 221 223 224 226 227 232 233 235 241 242 243 244 245 246 247 248 249 250 250 251 258 258
/src/algo/winmask/demo/win_mask_app.cpp	302 303 324 327
/src/algo/winmask/win_mask_gen_counts.cpp	88 89 91 92
/src/app/agp_validate/AgpFastaComparator.cpp	618
/src/app/agpconvert/agpconvert.cpp	651
/src/app/asn_cache/asn_cache_test.cpp	371 372 373
/src/app/asn_cache/prime_cache.cpp	971 1380 1381 1383
/src/app/asn_cache/sub_cache_create.cpp	227 228 230
/src/app/blast/blast_app_util.cpp	363
/src/app/blast/blast_formatter.cpp	243
/src/app/blast/deltablast_app.cpp	188 189 190
/src/app/blastvdb/blast_vdb_cmd.cpp	199 203
/src/app/cn3d/cn3d_blast.cpp	145
/src/app/cn3d/sequence_set.cpp	86 87 88 89 258 258 261 262 264 265 267 268 273 274 276 282 283 284 285 286 287 288 289 290 291 291 292 302 302
/src/app/magicblast/magicblast_util.cpp	255 616 730
/src/app/nmer_repeats/nmer_repeats.cpp	145
/src/app/objmgr/split_demo/split_loader.cpp	258 266 267
/src/app/read_blast_result/copy_loc.cpp	47 83
/src/app/read_blast_result/fit_blast.cpp	55 57
/src/app/read_blast_result/overlaps.cpp	589 591
/src/app/read_blast_result/read_blast_result_lib.cpp	495 700 712
/src/app/read_blast_result/short_proteins.cpp	62
/src/app/read_blast_result/shortcuts.cpp	41 43 98
/src/app/split_cache/split_cache.cpp	1342 1345 1347
/src/app/ssub_fork/ssub_fork.cpp	387 388 393 393 406 407 411 411
/src/app/streamtest/process_defline.hpp	236 250 278 291 330
/src/app/streamtest/process_flatfile.hpp	103
/src/app/streamtest/process_gene_overlap.hpp	87 226
/src/app/table2asn/fasta_ex.cpp	90
/src/app/table2asn/fcs_reader.cpp	279 279 281 337
/src/app/table2asn/feature_table_reader.cpp	648 1145 1849
/src/gui/objutils/adjust_consensus_splicesite.cpp	107 405
/src/gui/objutils/cmd_change_bioseq_inst.cpp	47
/src/gui/objutils/convert_raw_to_delta.cpp	1014 1023 1102 1111
/src/gui/objutils/macro_fn_do.cpp	1396 1882 2404
/src/gui/objutils/macro_fn_entry.cpp	1411 1526
/src/gui/objutils/macro_fn_feature.cpp	2883
/src/gui/objutils/na_utils.cpp	97
/src/gui/objutils/report_trim.cpp	439
/src/gui/objutils/test_macro/unit_test_field_resolver.cpp	1082
/src/gui/objutils/util_cmds.cpp	1073 1082 1107 1275 1334
/src/gui/packages/pkg_sequence_edit/add_global_code_break.cpp	474
/src/gui/packages/pkg_sequence_edit/add_linkage_to_gaps.cpp	331
/src/gui/packages/pkg_sequence_edit/add_secondary.cpp	503 514
/src/gui/packages/pkg_sequence_edit/clear_keywords.cpp	304 305 307 308
/src/gui/packages/pkg_sequence_edit/convert_cds_with_gaps_to_misc_feat.cpp	402 403 404 405 408 438 439 440 441 444
/src/gui/packages/pkg_sequence_edit/convert_selected_gaps.cpp	108 305 410 648
/src/gui/packages/pkg_sequence_edit/correct_rna_strand_dlg.cpp	304
/src/gui/packages/pkg_sequence_edit/create_seq_hist_for_tpa.cpp	359 567
/src/gui/packages/pkg_sequence_edit/discrepancy_dlg.cpp	860
/src/gui/packages/pkg_sequence_edit/dll_register.cpp	8592 8592 8598
/src/gui/packages/pkg_sequence_edit/edit_history.cpp	282
/src/gui/packages/pkg_sequence_edit/edit_seq_ends.cpp	554
/src/gui/packages/pkg_sequence_edit/edit_seq_ends_with_align.cpp	263
/src/gui/packages/pkg_sequence_edit/edit_seq_id.cpp	443 468
/src/gui/packages/pkg_sequence_edit/editing_action_desc.cpp	1065
/src/gui/packages/pkg_sequence_edit/editing_actions.cpp	1068
/src/gui/packages/pkg_sequence_edit/editingbtnspanel.cpp	945 4818 4847
/src/gui/packages/pkg_sequence_edit/expand_gaps.cpp	79
/src/gui/packages/pkg_sequence_edit/extend_cds_to_stop.cpp	375
/src/gui/packages/pkg_sequence_edit/load_secondary_accessions.cpp	127 137
/src/gui/packages/pkg_sequence_edit/mixedstrands.cpp	444
/src/gui/packages/pkg_sequence_edit/molinfo_edit_dlg.cpp	541 541 573 656
/src/gui/packages/pkg_sequence_edit/molinfoedit_util.cpp	352 776 1024
/src/gui/packages/pkg_sequence_edit/restore_rna_edit.cpp	274
/src/gui/packages/pkg_sequence_edit/retranslate_cds.cpp	164
/src/gui/packages/pkg_sequence_edit/revcomp_sequences.cpp	290
/src/gui/packages/pkg_sequence_edit/segregate_sets.cpp	1731 1733 1756 1758 1796 1798 1824 1826
/src/gui/packages/pkg_sequence_edit/sequpd.cpp	224 225 226
/src/gui/packages/pkg_sequence_edit/split_cds_with_too_many_n.cpp	95
/src/gui/packages/pkg_sequence_edit/trim_n.cpp	108
/src/gui/packages/pkg_sequence_edit/unit_test/unit_test_sequpdate.cpp	3917 3921
/src/gui/packages/pkg_sequence_edit/update_seq.cpp	628 643 779 991
/src/gui/packages/pkg_sequence_edit/update_seq_input.cpp	457 482 642
/src/gui/widgets/aln_multiple/alnvec_multi_ds.cpp	438
/src/gui/widgets/edit/alignment_assistant.cpp	900
/src/gui/widgets/edit/assembly_tracking_panel.cpp	340 350 412
/src/gui/widgets/edit/cds_translation_panel.cpp	664
/src/gui/widgets/edit/edit_object_seq_desc.cpp	471 511 544 545 550 551 556 557 562 662
/src/gui/widgets/edit/edit_object_seq_feat.cpp	1058 1059 1061 1133 1134
/src/gui/widgets/edit/edit_sequence.cpp	845
/src/gui/widgets/edit/molinfo_panel.cpp	271 272 295 296 503 504 538 539 609 612 614 617 619 622
/src/gui/widgets/edit/single_sequence_panel.cpp	305 306 307 312 566
/src/gui/widgets/edit/vectortrimpanel.cpp	967 975 978 979 981 984 985 1280 1362 1542 1560
/src/gui/widgets/feedback/feedback_wizard.cpp	477
/src/gui/widgets/loaders/fasta_object_loader.cpp	188
/src/gui/widgets/seq_desktop/desktop_typed_items.cpp	71
/src/gui/widgets/seq_graphic/alignment_job.cpp	245
/src/gui/widgets/seq_graphic/segment_map_ds.cpp	1096
/src/gui/widgets/seq_graphic/sequence_track.cpp	122
/src/gui/widgets/wx/sys_path.cpp	56
/src/misc/discrepancy/discrepancy_case.cpp	62 83 108 118 170 188 314 480 538 632 632 638 638 740 840 849 850
/src/misc/discrepancy/discrepancy_context.cpp	409
/src/misc/discrepancy/feature_tests.cpp	294 300 300 300 300 304 362 368 368 368 368 372 1193 1959 1959 2152 2152
/src/misc/discrepancy/seqdesc_per_bioseq.cpp	54 54 81 81 117
/src/misc/discrepancy/sequence_tests.cpp	135 149 149 149 190 190 217 217 249 275 287 301 317 341 433 545 545 698 875 974 1042 1053 1069 1247 1266 1371 1372 1372 1388 1389 1389 1429 1429 1843 1847 1847
/src/objects/macro/Molinfo_field.cpp	90 102 104 108 110
/src/objects/scoremat/Pssm.cpp	69 72 83 86
/src/objects/seq/Bioseq.cpp	262 264 265 266 301 347 352 357 362
/src/objects/seqedit/SeqEdit_Cmd_ChangeSeqAttr_.cpp	141
/src/objects/seqloc/Seq_id.cpp	2300 2349
/src/objects/seqset/Bioseq_set.cpp	68 159 159 262 263
/src/objmgr/bioseq_handle.cpp	207 209
/src/objmgr/bioseq_info.cpp	347 541 544 581 587 593 623 629 635 666 672 683 721 727 733 755 761 767 789 795 801 827 842 871 884 913 919 926 955 969 987 993 1000 1017 1024 1031 1047 1053 1060 1088
/src/objmgr/bioseq_set_info.cpp	509 526
/src/objmgr/seq_map.cpp	1124
/src/objmgr/seq_vector.cpp	234
/src/objmgr/split/blob_splitter_parser.cpp	217 677
/src/objmgr/test/test_helper.cpp	1115 1116
/src/objmgr/util/autodef.cpp	1100 1100 1150 1150
/src/objmgr/util/feature.cpp	4141
/src/objmgr/util/seq_trimmer.cpp	348 767
/src/objmgr/util/seqtitle.cpp	737 791
/src/objmgr/util/sequence.cpp	736 737 738 752 2673 2814 3407 3412 3775 3823 4063
/src/objmgr/util/unit_test/unit_test_seq_translator.cpp	948 949 950 988 989 990 991 992 993 1011 1013
/src/objtools/align_format/align_format_util.cpp	617 619
/src/objtools/alnmgr/alnvec.cpp	937 940
/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp	728 730
/src/objtools/blast/seqdb_writer/build_db.cpp	292 293 293 297 298 307 319 320 484
/src/objtools/blast/seqdb_writer/writedb_impl.cpp	167 973 981 1000 1002
/src/objtools/blast/services/unit_test/blast_services_test.cpp	74 76 78 82 293
/src/objtools/cddalignview/cav_seqset.cpp	80 81 82 83 245 245 248 249 250 251 252 253 257 258 259 260 261 262 263 264 265 266 267 268 268 269 277 277
/src/objtools/cleanup/cleanup.cpp	1791 1826 1851 1867 2374 2374 2697 2697 2699 2701 4414
/src/objtools/cleanup/newcleanupp.cpp	585 692 692 8648 11453 11464 11705 11742 12023 12060
/src/objtools/cleanup/test/unit_test_basic_cleanup.cpp	1655 1657 1658
/src/objtools/data_loaders/asn_cache/asn_index.cpp	249 250
/src/objtools/data_loaders/blastdb/unit_test/local_dataloader_test.cpp	91 97 199 204 225 230 277 283 289
/src/objtools/data_loaders/blastdb/unit_test/rmt_dataloader_test.cpp	157 162 195 207 257 303 308 313 318 345 348
/src/objtools/data_loaders/genbank/reader.cpp	619 651
/src/objtools/data_loaders/patcher/loaderpatcher.cpp	480
/src/objtools/edit/feattable_edit.cpp	2151
/src/objtools/edit/gap_trim.cpp	339
/src/objtools/edit/gaps_edit.cpp	317 317 323 323 428 457 464
/src/objtools/edit/loc_edit.cpp	780 2381 2382 2383 2384 2387 2417 2418 2419 2420 2423 2471 2525
/src/objtools/edit/seq_entry_edit.cpp	201 202 1950 2095 2096 2163 2205 2206 2592 2609 3291 3294 3295 3297 3300 3301 3326 3342
/src/objtools/edit/unit_test/unit_test_autodef.cpp	1168 2173
/src/objtools/edit/unit_test/unit_test_cds_fix.cpp	504 517 526
/src/objtools/edit/unit_test/unit_test_entry_edit.cpp	511 517 616 707 753 848 900 952 1055
/src/objtools/edit/unit_test/unit_test_feature_propagate.cpp	1360 1648 2106 2208
/src/objtools/edit/unit_test/unit_test_gap_trim.cpp	283
/src/objtools/edit/unit_test/unit_test_loc_edit.cpp	443 444 457 458 465 466 470 471 474 475 496 497 1552 1572 1598 1603 1638 1650 1732 1750 1758 1765 1772 1785 1790 1857 1926 1954
/src/objtools/flatfile/add.cpp	341 341 396 399 515 518 585 592 2077 2077 2077 2083 2798
/src/objtools/flatfile/asci_blk.cpp	2387 2391 2394 3364 3367 3368 3503 3504 3504 3505 3507 3515 3515 3529 3530
/src/objtools/flatfile/em_ascii.cpp	2261 2262
/src/objtools/flatfile/fta_qscore.cpp	645 646 670 1107
/src/objtools/flatfile/gb_ascii.cpp	1507 1508
/src/objtools/flatfile/genref.cpp	2326
/src/objtools/flatfile/loadfeat.cpp	4704 4704 4705
/src/objtools/flatfile/nucprot.cpp	2574 2574 2630 2630
/src/objtools/flatfile/sp_ascii.cpp	4676 4677 4699 4703
/src/objtools/flatfile/xm_ascii.cpp	1249 1250
/src/objtools/format/gather_items.cpp	3484
/src/objtools/readers/agp_converter.cpp	98 585 600
/src/objtools/readers/fasta.cpp	728 2120 2122
/src/objtools/readers/source_mod_parser.cpp	637
/src/objtools/readers/unit_test/unit_test_fasta_reader_old.cpp	587 587 588 1352 1500 1573 1577 1579
/src/objtools/test/objmgr/id64_unit_test.cpp	1294 1295 1298 1299 1300 1301 1302 1305 1306
/src/objtools/test/objmgr/id_unit_test.cpp	1187 2159 2160 2163 2164 2165 2166 2167 2170 2171
/src/objtools/test/objmgr/util/test_relloc.cpp	94
/src/objtools/test/objmgr/util/unit_test_seq.cpp	164 185 197 220 234
/src/objtools/test/objmgr/util/unit_test_seq_trimmer.cpp	353 749
/src/objtools/unit_test_util/unit_test_util.cpp	386 994 1001 1253 1563 1564 1567 1804 1816
/src/objtools/validator/cdregion_validator.cpp	1811 1812
/src/objtools/validator/gene_validator.cpp	388
/src/objtools/validator/single_feat_validator.cpp	904 1044 1045 4476
/src/objtools/validator/unit_test/unit_test_validator.cpp	4339 11628 12505 16324 16329 16348 16474 17326 17696 18655 18812 18818 18830 18834 18838 19577 19935 19976 22870 22934
/src/objtools/validator/utilities.cpp	306 1077 2458 2459
/src/objtools/validator/valid_biosource.cpp	475 2176 2356 2356
/src/objtools/validator/valid_pub.cpp	1252
/src/objtools/validator/validatorp.cpp	2467 2468
/src/objtools/validator/validerror_align.cpp	950 951 952
/src/objtools/validator/validerror_annot.cpp	167 190
/src/objtools/validator/validerror_bioseq.cpp	488 491 686 819 870 920 1042 1078 1078 1109 1135 1136 1242 2107 2122 2253 2257 2262 2265 2268 2562 2603 2672 2690 2690 2691 2753 2770 2801 3227 3230 3230 3233 3243 3243 3282 3286 3286 3290 3312 3313 3313 3329 3331 3432 3436 3436 3440 3580 3921 3973 4153 4154 4158 4266 4368 4369 4394 4709 4954 4955 4956 4957 4958 4962 5034 5035 5035 5136 5137 6216 6360 6361 7774 7775 7776 7777 7778 7786 7829 7829 8573 8574 9162 9247 9248 9249 9310 9320 9321 10362 10362 10362 10362 10364 10623 10624
/src/objtools/validator/validerror_bioseqset.cpp	164 672 714
/src/objtools/validator/validerror_graph.cpp	216 456 614
/src/objtools/writers/gff3_writer.cpp	1604 1791 1794 1801 1804 2245 2780
/src/sra/data_loaders/csra/test/test_csra_loader_mt.cpp	199 210
/src/sra/data_loaders/sra/test/test_sra_loader.cpp	62 81 100 119 138 157
/src/sra/readers/sra/test/csra_test_mt.cpp	146 156
/src/sra/readers/sra/test/vdb_test.cpp	1349 1350

1050 references in 213 files.