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Definitions for CSpliced_seg

Type	Member of	File	Line
class		/include/objects/seqalign/Spliced_seg.hpp	56
function prototype or declaration	CSpliced_seg	/include/objects/seqalign/Spliced_seg.hpp	61
function prototype or declaration	CSpliced_seg	/include/objects/seqalign/Spliced_seg.hpp	90
function definition	CSpliced_seg	/include/objects/seqalign/Spliced_seg.hpp	99

4 declarations in 1 files.

References to CSpliced_seg

File	Line
/include/gui/widgets/aln_table/alnspan_vertmodel.hpp	109 150 175
/include/misc/hgvs/variation_util.hpp	223
/include/misc/hgvs/variation_util2.hpp	357
/include/objects/seq/seq_align_mapper_base.hpp	50 179 182 212 254 279
/include/objects/seq/seq_loc_mapper_base.hpp	776 778
/include/objects/seqalign/Seq_align_.hpp	67 162
/include/objects/seqalign/Spliced_exon.hpp	56 69 88 101
/include/objects/seqalign/Spliced_seg.hpp	56 61 90 90 91 91 99 99
/include/objmgr/impl/seq_align_mapper.hpp	58
/include/objmgr/split/id_range.hpp	62 144
/include/objtools/alnmgr/aln_converters.hpp	151
/include/objtools/alnmgr/aln_generators.hpp	86 106
/include/objtools/alnmgr/seqids_extractor.hpp	301 304
/include/objtools/readers/gff2_reader.hpp	246
/include/objtools/writers/aln_writer.hpp	91 98 105
/include/objtools/writers/gff3_writer.hpp	273 317 321 325 329 333 337 341 345 349 353
/include/objtools/writers/gff3flybase_writer.hpp	61 66 71 76 81
/src/algo/align/prosplign/AliSeqAlign.cpp	133 236
/src/algo/align/prosplign/Info.cpp	669 702 713 724 855 855 888 990 1025 1056
/src/algo/align/prosplign/prosplign.cpp	776 777 1073 1075 1265 1306 1346 1349
/src/algo/align/splign/splign.cpp	3299 3351
/src/algo/align/splign/splign_formatter.cpp	649 651 675
/src/algo/align/splign/unit_test/unit_test_splign.cpp	122
/src/algo/align/util/align_compare.cpp	213 304 341
/src/algo/align/util/best_placement.cpp	316 463 500 548
/src/algo/align/util/score_builder.cpp	375 385 844
/src/algo/align/util/score_lookup.cpp	181 358 361 363 365 368 382 384 386 389 668 703 705 827 829 833 1318 1321 1562 1678
/src/algo/align/util/tabular_fmt.cpp	650 1391 1412
/src/algo/align/util/unit_test/score_builder_unit_test.cpp	401
/src/algo/blast/api/blast_seqalign.cpp	453 471 474
/src/algo/blast/api/blast_seqalign.hpp	159
/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp	316 511
/src/algo/gnomon/asn1.cpp	763 766 772 784 870 952
/src/algo/gnomon/gnomon_objmgr.cpp	82 85 155 314 426
/src/algo/id_mapper/app/id_mapper_app.cpp	651
/src/algo/seqqa/single_aln_tests.cpp	78 869 877
/src/algo/sequence/feature_generator.hpp	127 133 282
/src/algo/sequence/gene_model.cpp	291 479 481 605 615 658 659 1334 2811 2819 4144 4148 4149 4223 4233 4260 4391 4392
/src/algo/sequence/internal_stops.cpp	118 121 286 291 312
/src/algo/sequence/project_exons.cpp	135 221 228 1524 1735
/src/algo/sequence/transform_align.cpp	54 81 91 139 147 181 419 449 473 491 555 560 588 593 643 645 649 651 768 814 836 839 847 1037 1045 1058 1140 1266
/src/algo/sequence/unit_test/unit_test_gene_model.cpp	532 533 534 566 567 573 623 640 641 648 704 772 832 849 850 857 913 961 962 969 1087 1088 1095 1214 1215 1222 1314 1315 1322
/src/app/magicblast/magicblast_util.cpp	922 923 1096 1287 1295 1354
/src/gui/objutils/fingp_seqalign.cpp	264 265 265 272 273 275 277 280 281 395
/src/gui/packages/pkg_sequence_edit/recompute_intervals.cpp	96 105
/src/gui/packages/pkg_sequence_edit/subprep_util.cpp	786 795
/src/gui/widgets/aln_table/alnspan_vertmodel.cpp	116 129 282 284 985 1040 1042
/src/gui/widgets/edit/cds_translation_panel.cpp	1268 1295
/src/gui/widgets/seq_graphic/alignment_glyph.cpp	857 861
/src/gui/widgets/seq_graphic/gui_object_info_seq_align.cpp	140
/src/misc/hgvs/objcoords.cpp	334 335 739
/src/misc/hgvs/variation_util.cpp	171 322 342
/src/misc/hgvs/variation_util2.cpp	277 396 430 607 611
/src/objects/seq/seq_align_mapper_base.cpp	689 810 813 1719 1757 1845 1846 2163 2238 2303 2339 2367 2403 2454 2478 2490 2490 3061
/src/objects/seq/seq_loc_mapper_base.cpp	1881 1899 2039 2059 2062 2070
/src/objects/seqalign/NCBI_Seqalign_module.cpp	80
/src/objects/seqalign/Seq_align.cpp	1512 1831 1966 2069 2162 2195 2221
/src/objects/seqalign/Seq_align_.cpp	121 275
/src/objects/seqalign/Spliced_exon.cpp	57 143 151
/src/objects/seqalign/Spliced_seg.cpp	50 56 88 99 159 191 299 348 357 492 512 535
/src/objects/seqalign/Spliced_seg_.cpp	121
/src/objmgr/annot_object.cpp	736
/src/objmgr/seq_align_mapper.cpp	463
/src/objmgr/split/id_range.cpp	301 308
/src/objmgr/util/seq_align_util.cpp	122 124 173 176 181
/src/objtools/alnmgr/aln_converters.cpp	603 611 616
/src/objtools/alnmgr/aln_generators.cpp	502 532 533 536 720 734 734 742 747 747 809
/src/objtools/alnmgr/alntext.cpp	262 296 399
/src/objtools/alnmgr/score_builder_base.cpp	154 196 369 511 611 1018
/src/objtools/cleanup/autogenerated_cleanup.cpp	254
/src/objtools/cleanup/autogenerated_cleanup.hpp	205
/src/objtools/readers/gff2_reader.cpp	562 562 705 708 964 967
/src/objtools/writers/aln_writer.cpp	207 268 367 381
/src/objtools/writers/gff3_writer.cpp	421 447 458 468 472 495 516 566 571 591 611 630 693 729
/src/objtools/writers/gff3flybase_writer.cpp	202 244 278 294 476
/src/objtools/writers/psl_record.cpp	95 110 173 203 244 286 312 316 339
/src/objtools/writers/psl_record.hpp	62 101 104 107 110 113 116 119

397 references in 77 files.