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Definitions for CPairwiseAln

Type	Member of	File	Line
class		/include/objtools/alnmgr/pairwise_aln.hpp	52
function definition	CPairwiseAln	/include/objtools/alnmgr/pairwise_aln.hpp	74

2 declarations in 1 files.

References to CPairwiseAln

File	Line
/include/algo/align/util/score_builder.hpp	45 163
/include/gui/widgets/hit_matrix/diag_hit.hpp	61 95 105 111
/include/objtools/alnmgr/aln_builders.hpp	55 56
/include/objtools/alnmgr/aln_converters.hpp	76 88 100 112 125 138 150 175 181 282 283 284 288 289 293 294 304 304 378 379 380 389 392 398 398 401 401 425 438
/include/objtools/alnmgr/aln_generators.hpp	59 92 97 102 107
/include/objtools/alnmgr/aln_serial.hpp	46 55 58 64
/include/objtools/alnmgr/aln_user_options.hpp	51
/include/objtools/alnmgr/pairwise_aln.hpp	52 74 151 160 170 237 248 254 273 303 304
/include/objtools/alnmgr/sparse_aln.hpp	53 54 55
/src/algo/align/util/align_compare.cpp	135 137 138
/src/algo/align/util/score_builder.cpp	362 363 381 391 396 406 442 443 447 448
/src/gui/widgets/hit_matrix/dense_ds.cpp	810 810
/src/gui/widgets/hit_matrix/diag_hit.cpp	80
/src/gui/widgets/seq_graphic/alignment_job.cpp	2344 2369 2370
/src/gui/widgets/seq_graphic/feature_glyph.cpp	1640 1663 1664 1664 1707 1708 1708 1716 1716 1716 1717 1718 1781 1858 1859 1859 1863 1865 1866 1866
/src/objtools/alnmgr/aln_builders.cpp	49 50 53 65 69 70 71 72 74 95 96 120 124 125 126 141 142 143 144 146 158 159 167 168 186 186 187 190 198 209 211 212 213 238 239 246 247 265 266 269 271 341 342 345 346 347 355 356 369 370 371 375 376 377 378 379 388 393 396 398 398 412 413 415 420 445 448 448 450 450 461 463 463 464 464 496 497 532 535 536 538 539 582 584
/src/objtools/alnmgr/aln_converters.cpp	64 139 203 224 237 303 309 322 385 397 415 433 463 475 528 537 544 561 592 602 673 712 719 731 736 746 761 793 855 880 949 953 961 968 975 975
/src/objtools/alnmgr/aln_generators.cpp	115 150 154 155 161 164 176 233 234 259 340 341 387 442 478 503 514 514 544 557 558 736 743 754 755 756 758 759 786 787 787 839 840 874 937 970 997 998 1048 1102 1139
/src/objtools/alnmgr/aln_serial.cpp	43 85 97 102 103 104 105 106 107 108 109 110 111 111 112 113 128 137
/src/objtools/alnmgr/demo/aln_test_app.cpp	175 184 192 476 480 488
/src/objtools/alnmgr/pairwise_aln.cpp	84 84 98 243 258 259 261 264 266 269 270 279
/src/objtools/alnmgr/score_builder_base.cpp	139 139 157 158 211 212
/src/objtools/alnmgr/sparse_aln.cpp	113 114 147 148 151 151 157 166 175 198 233 316 317 324 325 569
/src/objtools/alnmgr/sparse_ci.cpp	254 256 259 259 260 260
/src/objtools/alnmgr/unit_test/unit_test_alnmgr.cpp	143 203 233 518 518 607 607

332 references in 25 files.