NCBI C++ ToolKit
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SPHIPatternInfo Struct Reference

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Information about a single pattern occurence in the query. More...

#include <algo/blast/core/blast_def.h>

Public Attributes

Int4 offset
 Starting offset of this pattern occurrence. More...
 
Int4 length
 Length of this pattern occurrence. More...
 

Detailed Description

Information about a single pattern occurence in the query.

Definition at line 292 of file blast_def.h.

Member Data Documentation

Int4 SPHIPatternInfo::length

Length of this pattern occurrence.

Definition at line 294 of file blast_def.h.

Referenced by PHIGetGappedScore(), s_PHIBlastAddPatternHit(), and s_PHITracebackFromHSPList().

Int4 SPHIPatternInfo::offset

Starting offset of this pattern occurrence.

Definition at line 293 of file blast_def.h.

Referenced by PhiBlastGetEffectiveNumberOfPatterns(), PHIGetGappedScore(), CBlastFormat::PrintPhiResult(), and s_PHIBlastAddPatternHit().


The documentation for this struct was generated from the following file:
Modified on Sun Dec 10 16:50:57 2017 by modify_doxy.py rev. 546573