SAnnotObject_Index Struct Reference

Search Toolkit Book for SAnnotObject_Index

#include <objmgr/impl/annot_object_index.hpp>

Collaboration diagram for SAnnotObject_Index:

Public Types
enum	EFlags {   fStrand_mask = 3 , fStrand_none = 0 , fStrand_plus = 1 , fStrand_minus = 2 ,   fStrand_both = 3 , fMultiId = 1 << 2 , fPartial = 1 << 3 , fSimpleLocation_Mask = 3 << 4 ,   fLocation_Point = 1 << 4 , fLocation_Interval = 2 << 4 , fLocation_Whole = 3 << 4 }
typedef Uint1	TFlags

Public Member Functions
	SAnnotObject_Index (void)
bool	GetMultiIdFlag (void) const
void	SetMultiIdFlag (void)
bool	IsPartial (void) const
void	SetPartial (bool partial)
bool	LocationIsSimple (void) const
bool	LocationIsPoint (void) const
bool	LocationIsInterval (void) const
bool	LocationIsWhole (void) const
void	SetLocationIsPoint (void)
void	SetLocationIsInterval (void)
void	SetLocationIsWhole (void)

Public Attributes
CAnnotObject_Info *	m_AnnotObject_Info
CRef< CObjectFor< CHandleRange > >	m_HandleRange
Uint2	m_AnnotLocationIndex
Uint1	m_Flags

Detailed Description

Definition at line 72 of file annot_object_index.hpp.

Member Typedef Documentation

TFlags

typedef Uint1 SAnnotObject_Index::TFlags

Definition at line 94 of file annot_object_index.hpp.

Member Enumeration Documentation

EFlags

enum SAnnotObject_Index::EFlags

Enumerator
fStrand_mask
fStrand_none
fStrand_plus
fStrand_minus
fStrand_both
fMultiId
fPartial
fSimpleLocation_Mask
fLocation_Point
fLocation_Interval
fLocation_Whole

Definition at line 81 of file annot_object_index.hpp.

Constructor & Destructor Documentation

SAnnotObject_Index()

SAnnotObject_Index::SAnnotObject_Index ( void  )

inline

Definition at line 74 of file annot_object_index.hpp.

Member Function Documentation

GetMultiIdFlag()

bool SAnnotObject_Index::GetMultiIdFlag ( void  ) const

inline

Definition at line 96 of file annot_object_index.hpp.

References fMultiId, and m_Flags.

IsPartial()

bool SAnnotObject_Index::IsPartial ( void  ) const

inline

Definition at line 104 of file annot_object_index.hpp.

References fPartial, and m_Flags.

LocationIsInterval()

bool SAnnotObject_Index::LocationIsInterval ( void  ) const

inline

Definition at line 122 of file annot_object_index.hpp.

References fLocation_Interval, fSimpleLocation_Mask, and m_Flags.

Referenced by CSeq_loc_Conversion::ConvertSimpleLoc().

LocationIsPoint()

bool SAnnotObject_Index::LocationIsPoint ( void  ) const

inline

Definition at line 118 of file annot_object_index.hpp.

References fLocation_Point, fSimpleLocation_Mask, and m_Flags.

Referenced by CSeq_loc_Conversion::ConvertSimpleLoc().

LocationIsSimple()

bool SAnnotObject_Index::LocationIsSimple ( void  ) const

inline

Definition at line 114 of file annot_object_index.hpp.

References fSimpleLocation_Mask, and m_Flags.

Referenced by CSeq_loc_Conversion::Convert().

LocationIsWhole()

bool SAnnotObject_Index::LocationIsWhole ( void  ) const

inline

Definition at line 126 of file annot_object_index.hpp.

References fLocation_Whole, fSimpleLocation_Mask, and m_Flags.

Referenced by CSeq_loc_Conversion::ConvertSimpleLoc().

SetLocationIsInterval()

void SAnnotObject_Index::SetLocationIsInterval ( void  )

inline

Definition at line 134 of file annot_object_index.hpp.

References fLocation_Interval, fSimpleLocation_Mask, and m_Flags.

Referenced by CSeqTableLocColumns::SetTableKeyAndIndex().

SetLocationIsPoint()

void SAnnotObject_Index::SetLocationIsPoint ( void  )

inline

Definition at line 130 of file annot_object_index.hpp.

References fLocation_Point, fSimpleLocation_Mask, and m_Flags.

Referenced by CSeqTableLocColumns::SetTableKeyAndIndex().

SetLocationIsWhole()

void SAnnotObject_Index::SetLocationIsWhole ( void  )

inline

Definition at line 138 of file annot_object_index.hpp.

References fLocation_Whole, fSimpleLocation_Mask, and m_Flags.

Referenced by CSeqTableLocColumns::SetTableKeyAndIndex().

SetMultiIdFlag()

void SAnnotObject_Index::SetMultiIdFlag ( void  )

inline

Definition at line 100 of file annot_object_index.hpp.

References fMultiId, and m_Flags.

Referenced by CSeq_annot_Info::x_InitFeatKeys(), CSeq_annot_Info::x_InitFeatTableKeys(), and CSeq_annot_Info::x_MapAnnotObject().

SetPartial()

void SAnnotObject_Index::SetPartial ( bool  partial )

inline

Definition at line 108 of file annot_object_index.hpp.

References fPartial, and m_Flags.

Referenced by CSeq_annot_Info::x_InitFeatKeys(), and CSeq_annot_Info::x_InitFeatTableKeys().

Member Data Documentation

m_AnnotLocationIndex

Uint2 SAnnotObject_Index::m_AnnotLocationIndex

Definition at line 145 of file annot_object_index.hpp.

Referenced by CSeq_annot_Info::x_AddAlignIndex(), CSeq_annot_Info::x_InitFeatKeys(), CSeq_annot_Info::x_InitFeatTableKeys(), CSeq_annot_Info::x_InitGraphKeys(), CSeq_annot_Info::x_InitLocsKeys(), CSeq_annot_Info::x_MapAnnotObject(), and CAnnot_Collector::x_MatchLocIndex().

m_AnnotObject_Info

CAnnotObject_Info* SAnnotObject_Index::m_AnnotObject_Info

Definition at line 143 of file annot_object_index.hpp.

Referenced by CSeq_annot_Info::x_AddAlignIndex(), CSeq_annot_Info::x_InitFeatKeys(), CSeq_annot_Info::x_InitFeatTableKeys(), CSeq_annot_Info::x_InitGraphKeys(), CSeq_annot_Info::x_InitLocsKeys(), CTSE_Chunk_Info::x_InitObjectIndexList(), CSeq_annot_Info::x_Map(), CSeq_annot_Info::x_MapAnnotObject(), CTSE_Info::x_MapAnnotObject(), CAnnot_Collector::x_MatchLocIndex(), and CTSE_Chunk_Info::x_UpdateAnnotIndexContents().

m_Flags

Uint1 SAnnotObject_Index::m_Flags

Definition at line 146 of file annot_object_index.hpp.

Referenced by CSeq_loc_Conversion::ConvertSimpleLoc(), GetMultiIdFlag(), IsPartial(), LocationIsInterval(), LocationIsPoint(), LocationIsSimple(), LocationIsWhole(), SetLocationIsInterval(), SetLocationIsPoint(), SetLocationIsWhole(), SetMultiIdFlag(), SetPartial(), CSeqTableLocColumns::SetTableKeyAndIndex(), CSeq_annot_Info::x_InitFeatKeys(), CSeq_annot_Info::x_InitFeatTableKeys(), CSeq_annot_Info::x_MapAnnotObject(), and CAnnot_Collector::x_MatchRange().

m_HandleRange

CRef< CObjectFor<CHandleRange> > SAnnotObject_Index::m_HandleRange

Definition at line 144 of file annot_object_index.hpp.

Referenced by CSeq_annot_Info::x_AddAlignIndex(), CSeq_annot_Info::x_InitFeatKeys(), CSeq_annot_Info::x_InitFeatTableKeys(), CSeq_annot_Info::x_InitGraphKeys(), CSeq_annot_Info::x_InitLocsKeys(), CSeq_annot_Info::x_MapAnnotObject(), and CAnnot_Collector::x_MatchRange().

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The documentation for this struct was generated from the following file:

• include/objmgr/impl/annot_object_index.hpp