#include <ncbi_pch.hpp>#include <corelib/test_boost.hpp>#include <algo/blast/api/blast_options_handle.hpp>#include <algo/blast/api/blast_prot_options.hpp>#include <algo/blast/api/psiblast_options.hpp>#include <algo/blast/api/blast_advprot_options.hpp>#include <algo/blast/api/blast_nucl_options.hpp>#include <algo/blast/api/disc_nucl_options.hpp>#include <algo/blast/api/blastx_options.hpp>#include <algo/blast/api/tblastn_options.hpp>#include <algo/blast/api/tblastx_options.hpp>#include <algo/blast/api/blastp_kmer_options.hpp>#include <algo/blast/core/blast_def.h>#include "test_objmgr.hpp"#include <cstdlib>
Include dependency graph for optionshandle_unit_test.cpp:
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Classes | |
| struct | UniversalOptiosHandleFixture |
| struct | ProteinOptiosHandleFixture |
| struct | PSIBlastOptiosHandleFixture |
| struct | AdvancedProteinOptionsHandleFixture |
| struct | BlastNuclOptionsHandleFixture |
| struct | DiscNucleotideOptionsHandleFixture |
Macros | |
| #define | CALL_MEMBER_FUNCTION(obj, membFnPtr) ((obj).*(membFnPtr)) |
Macro Definition Documentation
◆ CALL_MEMBER_FUNCTION
| #define CALL_MEMBER_FUNCTION | ( | obj, | |
| membFnPtr | |||
| ) | ((obj).*(membFnPtr)) |
Function Documentation
◆ BOOST_AUTO_TEST_CASE() [1/14]
| BOOST_AUTO_TEST_CASE | ( | BadNameTest | ) |
Definition at line 241 of file optionshandle_unit_test.cpp.
References CBlastOptionsFactory::CreateTask(), and NULL.
◆ BOOST_AUTO_TEST_CASE() [2/14]
| BOOST_AUTO_TEST_CASE | ( | BlastnShortTest | ) |
Definition at line 204 of file optionshandle_unit_test.cpp.
References CBlastOptionsFactory::CreateTask(), CBlastNucleotideOptionsHandle::GetMatchReward(), CBlastNucleotideOptionsHandle::GetWordSize(), and NULL.
◆ BOOST_AUTO_TEST_CASE() [3/14]
| BOOST_AUTO_TEST_CASE | ( | BlastnTest | ) |
Definition at line 195 of file optionshandle_unit_test.cpp.
References CBlastOptionsFactory::CreateTask(), CBlastNucleotideOptionsHandle::GetMatchReward(), and NULL.
◆ BOOST_AUTO_TEST_CASE() [4/14]
| BOOST_AUTO_TEST_CASE | ( | BlastpFastTest | ) |
Definition at line 261 of file optionshandle_unit_test.cpp.
References BLAST_WORD_THRESHOLD_BLASTP_FAST, CBlastOptionsFactory::CreateTask(), eCompressedAaLookupTable, CBlastOptions::GetLookupTableType(), CBlastOptions::GetMatrixName(), CBlastOptionsHandle::GetOptions(), CBlastOptions::GetWordSize(), CBlastOptions::GetWordThreshold(), NULL, and util::strcmp().
◆ BOOST_AUTO_TEST_CASE() [5/14]
| BOOST_AUTO_TEST_CASE | ( | BlastpLookupTableType | ) |
Definition at line 274 of file optionshandle_unit_test.cpp.
References BLAST_WORD_THRESHOLD_BLASTP, BLAST_WORD_THRESHOLD_BLASTP_FAST, BLAST_WORD_THRESHOLD_BLASTP_WD_SZ_6, BLAST_WORD_THRESHOLD_BLASTP_WD_SZ_7, CBlastOptionsFactory::CreateTask(), eAaLookupTable, eCompressedAaLookupTable, CBlastOptions::GetLookupTableType(), CBlastOptionsHandle::GetOptions(), CBlastOptions::GetWordThreshold(), and CBlastProteinOptionsHandle::SetWordSize().
◆ BOOST_AUTO_TEST_CASE() [6/14]
| BOOST_AUTO_TEST_CASE | ( | BlastpShortTest | ) |
Definition at line 297 of file optionshandle_unit_test.cpp.
References CBlastOptionsFactory::CreateTask(), CBlastProteinOptionsHandle::GetMatrixName(), CBlastProteinOptionsHandle::GetWordSize(), NULL, and util::strcmp().
◆ BOOST_AUTO_TEST_CASE() [7/14]
| BOOST_AUTO_TEST_CASE | ( | BlastpTest | ) |
Definition at line 251 of file optionshandle_unit_test.cpp.
References CBlastOptionsFactory::CreateTask(), CBlastProteinOptionsHandle::GetMatrixName(), CBlastProteinOptionsHandle::GetWordSize(), NULL, and util::strcmp().
◆ BOOST_AUTO_TEST_CASE() [8/14]
| BOOST_AUTO_TEST_CASE | ( | BlastxTest | ) |
Definition at line 307 of file optionshandle_unit_test.cpp.
References CBlastOptionsFactory::CreateTask(), CBlastProteinOptionsHandle::GetMatrixName(), CBlastProteinOptionsHandle::GetWordSize(), NULL, and util::strcmp().
◆ BOOST_AUTO_TEST_CASE() [9/14]
| BOOST_AUTO_TEST_CASE | ( | CaseSensitiveTest | ) |
Definition at line 233 of file optionshandle_unit_test.cpp.
References CBlastOptionsFactory::CreateTask(), and NULL.
◆ BOOST_AUTO_TEST_CASE() [10/14]
| BOOST_AUTO_TEST_CASE | ( | DCMegablastTest | ) |
Definition at line 223 of file optionshandle_unit_test.cpp.
References CBlastOptionsFactory::CreateTask(), CBlastNucleotideOptionsHandle::GetMatchReward(), CDiscNucleotideOptionsHandle::GetTemplateLength(), and NULL.
◆ BOOST_AUTO_TEST_CASE() [11/14]
| BOOST_AUTO_TEST_CASE | ( | KBlastpTest | ) |
Definition at line 337 of file optionshandle_unit_test.cpp.
References CBlastOptionsFactory::CreateTask(), CBlastpKmerOptionsHandle::GetCandidateSeqs(), CBlastProteinOptionsHandle::GetMatrixName(), CBlastpKmerOptionsHandle::GetMinHits(), NULL, and util::strcmp().
◆ BOOST_AUTO_TEST_CASE() [12/14]
| BOOST_AUTO_TEST_CASE | ( | MegablastTest | ) |
Definition at line 214 of file optionshandle_unit_test.cpp.
References CBlastOptionsFactory::CreateTask(), CBlastNucleotideOptionsHandle::GetMatchReward(), and NULL.
◆ BOOST_AUTO_TEST_CASE() [13/14]
| BOOST_AUTO_TEST_CASE | ( | TblastnTest | ) |
Definition at line 317 of file optionshandle_unit_test.cpp.
References CBlastOptionsFactory::CreateTask(), CBlastProteinOptionsHandle::GetMatrixName(), CBlastProteinOptionsHandle::GetWordSize(), NULL, and util::strcmp().
◆ BOOST_AUTO_TEST_CASE() [14/14]
| BOOST_AUTO_TEST_CASE | ( | TblastxTest | ) |
Definition at line 327 of file optionshandle_unit_test.cpp.
References CBlastOptionsFactory::CreateTask(), CBlastProteinOptionsHandle::GetMatrixName(), CBlastProteinOptionsHandle::GetWordSize(), NULL, and util::strcmp().
◆ BOOST_FIXTURE_TEST_CASE() [1/61]
| BOOST_FIXTURE_TEST_CASE | ( | Get_DustLevelWithDustOptionsUnallocated_BlastNucl | , |
| BlastNuclOptionsHandleFixture | |||
| ) |
Definition at line 817 of file optionshandle_unit_test.cpp.
References rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [2/61]
| BOOST_FIXTURE_TEST_CASE | ( | Get_DustLinkerWithDustOptionsUnallocated_BlastNucl | , |
| BlastNuclOptionsHandleFixture | |||
| ) |
Definition at line 853 of file optionshandle_unit_test.cpp.
References rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [3/61]
| BOOST_FIXTURE_TEST_CASE | ( | Get_DustWindowWithDustOptionsUnallocated_BlastNucl | , |
| BlastNuclOptionsHandleFixture | |||
| ) |
Definition at line 835 of file optionshandle_unit_test.cpp.
References rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [4/61]
| BOOST_FIXTURE_TEST_CASE | ( | Get_SegHicutWithSegOptionsUnallocated_Protein | , |
| ProteinOptiosHandleFixture | |||
| ) |
Definition at line 497 of file optionshandle_unit_test.cpp.
References rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [5/61]
| BOOST_FIXTURE_TEST_CASE | ( | Get_SegLocutWithSegOptionsUnallocated_Protein | , |
| ProteinOptiosHandleFixture | |||
| ) |
Definition at line 479 of file optionshandle_unit_test.cpp.
References rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [6/61]
| BOOST_FIXTURE_TEST_CASE | ( | Get_SegWindowWithSegOptionsUnallocated_Protein | , |
| ProteinOptiosHandleFixture | |||
| ) |
Definition at line 461 of file optionshandle_unit_test.cpp.
References rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [7/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_CompositionBasedStats_AdvancedProtein | , |
| AdvancedProteinOptionsHandleFixture | |||
| ) |
◆ BOOST_FIXTURE_TEST_CASE() [8/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_Culling_Universal | , |
| UniversalOptiosHandleFixture | |||
| ) |
Definition at line 182 of file optionshandle_unit_test.cpp.
References CBlastOptionsHandle::GetCullingLimit(), CBlastOptionsHandle::SetCullingLimit(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [9/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_CutoffScore_Universal | , |
| UniversalOptiosHandleFixture | |||
| ) |
Definition at line 152 of file optionshandle_unit_test.cpp.
References CBlastOptionsHandle::GetCutoffScore(), CBlastOptionsHandle::SetCutoffScore(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [10/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_DbLength_Protein | , |
| ProteinOptiosHandleFixture | |||
| ) |
Definition at line 411 of file optionshandle_unit_test.cpp.
References CBlastOptionsHandle::GetDbLength(), CBlastOptionsHandle::SetDbLength(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [11/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_DbSeqNum_Protein | , |
| ProteinOptiosHandleFixture | |||
| ) |
Definition at line 421 of file optionshandle_unit_test.cpp.
References CBlastOptionsHandle::GetDbSeqNum(), CBlastOptionsHandle::SetDbSeqNum(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [12/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_DustFiltering_BlastNucl | , |
| BlastNuclOptionsHandleFixture | |||
| ) |
Definition at line 797 of file optionshandle_unit_test.cpp.
References CBlastNucleotideOptionsHandle::GetDustFiltering(), CBlastNucleotideOptionsHandle::SetDustFiltering(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [13/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_DustFilteringLevel_BlastNucl | , |
| BlastNuclOptionsHandleFixture | |||
| ) |
Definition at line 807 of file optionshandle_unit_test.cpp.
References CBlastNucleotideOptionsHandle::GetDustFilteringLevel(), CBlastNucleotideOptionsHandle::SetDustFilteringLevel(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [14/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_DustFilteringLinker_BlastNucl | , |
| BlastNuclOptionsHandleFixture | |||
| ) |
Definition at line 843 of file optionshandle_unit_test.cpp.
References CBlastNucleotideOptionsHandle::GetDustFilteringLinker(), CBlastNucleotideOptionsHandle::SetDustFilteringLinker(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [15/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_DustFilteringWindow_BlastNucl | , |
| BlastNuclOptionsHandleFixture | |||
| ) |
Definition at line 825 of file optionshandle_unit_test.cpp.
References CBlastNucleotideOptionsHandle::GetDustFilteringWindow(), CBlastNucleotideOptionsHandle::SetDustFilteringWindow(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [16/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_EffectiveSearchSpace_BlastNucl | , |
| BlastNuclOptionsHandleFixture | |||
| ) |
Definition at line 787 of file optionshandle_unit_test.cpp.
References CBlastOptionsHandle::GetEffectiveSearchSpace(), CBlastOptionsHandle::SetEffectiveSearchSpace(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [17/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_EffectiveSearchSpace_Protein | , |
| ProteinOptiosHandleFixture | |||
| ) |
Definition at line 431 of file optionshandle_unit_test.cpp.
References CBlastOptionsHandle::GetEffectiveSearchSpace(), CBlastOptionsHandle::SetEffectiveSearchSpace(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [18/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_EvalueThreshold_Universal | , |
| UniversalOptiosHandleFixture | |||
| ) |
Definition at line 142 of file optionshandle_unit_test.cpp.
References CBlastOptionsHandle::GetEvalueThreshold(), CBlastOptionsHandle::SetEvalueThreshold(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [19/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_GapExtensionCost_BlastNucl | , |
| BlastNuclOptionsHandleFixture | |||
| ) |
Definition at line 777 of file optionshandle_unit_test.cpp.
References CBlastNucleotideOptionsHandle::GetGapExtensionCost(), CBlastNucleotideOptionsHandle::SetGapExtensionCost(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [20/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_GapExtensionCost_Protein | , |
| ProteinOptiosHandleFixture | |||
| ) |
Definition at line 525 of file optionshandle_unit_test.cpp.
References CBlastProteinOptionsHandle::GetGapExtensionCost(), CBlastProteinOptionsHandle::SetGapExtensionCost(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [21/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_GapExtnAlgorithm_BlastNucl | , |
| BlastNuclOptionsHandleFixture | |||
| ) |
Definition at line 689 of file optionshandle_unit_test.cpp.
References eDynProgScoreOnly, eGreedyScoreOnly, CBlastNucleotideOptionsHandle::GetGapExtnAlgorithm(), CBlastNucleotideOptionsHandle::SetGapExtnAlgorithm(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [22/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_GapOpeningCost_BlastNucl | , |
| BlastNuclOptionsHandleFixture | |||
| ) |
Definition at line 767 of file optionshandle_unit_test.cpp.
References CBlastNucleotideOptionsHandle::GetGapOpeningCost(), CBlastNucleotideOptionsHandle::SetGapOpeningCost(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [23/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_GapOpeningCost_Protein | , |
| ProteinOptiosHandleFixture | |||
| ) |
Definition at line 515 of file optionshandle_unit_test.cpp.
References CBlastProteinOptionsHandle::GetGapOpeningCost(), CBlastProteinOptionsHandle::SetGapOpeningCost(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [24/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_GappedMode_Universal | , |
| UniversalOptiosHandleFixture | |||
| ) |
Definition at line 172 of file optionshandle_unit_test.cpp.
References CBlastOptionsHandle::GetGappedMode(), CBlastOptionsHandle::SetGappedMode(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [25/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_GapTracebackAlgorithm_BlastNucl | , |
| BlastNuclOptionsHandleFixture | |||
| ) |
Definition at line 718 of file optionshandle_unit_test.cpp.
References eDynProgTbck, CBlastNucleotideOptionsHandle::GetGapTracebackAlgorithm(), CBlastNucleotideOptionsHandle::SetGapTracebackAlgorithm(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [26/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_GapTrigger_Universal | , |
| UniversalOptiosHandleFixture | |||
| ) |
Definition at line 112 of file optionshandle_unit_test.cpp.
References CBlastOptionsHandle::GetGapTrigger(), CBlastOptionsHandle::SetGapTrigger(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [27/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_GapXDropoff_Universal | , |
| UniversalOptiosHandleFixture | |||
| ) |
Definition at line 102 of file optionshandle_unit_test.cpp.
References CBlastOptionsHandle::GetGapXDropoff(), CBlastOptionsHandle::SetGapXDropoff(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [28/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_GapXDropoffFinal_BlastNucl | , |
| BlastNuclOptionsHandleFixture | |||
| ) |
Definition at line 679 of file optionshandle_unit_test.cpp.
References CBlastOptionsHandle::GetGapXDropoffFinal(), CBlastOptionsHandle::SetGapXDropoffFinal(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [29/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_GapXDropoffFinal_Protein | , |
| ProteinOptiosHandleFixture | |||
| ) |
Definition at line 401 of file optionshandle_unit_test.cpp.
References CBlastOptionsHandle::GetGapXDropoffFinal(), CBlastOptionsHandle::SetGapXDropoffFinal(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [30/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_HitlistSize_Universal | , |
| UniversalOptiosHandleFixture | |||
| ) |
Definition at line 122 of file optionshandle_unit_test.cpp.
References CBlastOptionsHandle::GetHitlistSize(), CBlastOptionsHandle::SetHitlistSize(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [31/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_InclusionThreshold_PSIBlast | , |
| PSIBlastOptiosHandleFixture | |||
| ) |
Definition at line 558 of file optionshandle_unit_test.cpp.
References CPSIBlastOptionsHandle::GetInclusionThreshold(), CPSIBlastOptionsHandle::SetInclusionThreshold(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [32/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_LookupTableType_BlastNucl | , |
| BlastNuclOptionsHandleFixture | |||
| ) |
Definition at line 632 of file optionshandle_unit_test.cpp.
References eNaLookupTable, CBlastNucleotideOptionsHandle::GetLookupTableType(), CBlastNucleotideOptionsHandle::SetLookupTableType(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [33/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_MaskAtHash_Universal | , |
| UniversalOptiosHandleFixture | |||
| ) |
Definition at line 92 of file optionshandle_unit_test.cpp.
References CBlastOptionsHandle::GetMaskAtHash(), CBlastOptionsHandle::SetMaskAtHash(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [34/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_MatchReward_BlastNucl | , |
| BlastNuclOptionsHandleFixture | |||
| ) |
Definition at line 737 of file optionshandle_unit_test.cpp.
References CBlastNucleotideOptionsHandle::GetMatchReward(), CBlastNucleotideOptionsHandle::SetMatchReward(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [35/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_MatrixName_BlastNucl | , |
| BlastNuclOptionsHandleFixture | |||
| ) |
Definition at line 757 of file optionshandle_unit_test.cpp.
References CBlastNucleotideOptionsHandle::GetMatrixName(), CBlastNucleotideOptionsHandle::SetMatrixName(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [36/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_MatrixName_Protein | , |
| ProteinOptiosHandleFixture | |||
| ) |
Definition at line 505 of file optionshandle_unit_test.cpp.
References CBlastProteinOptionsHandle::GetMatrixName(), CBlastProteinOptionsHandle::SetMatrixName(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [37/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_MaxNumHspPerSequence_Universal | , |
| UniversalOptiosHandleFixture | |||
| ) |
Definition at line 132 of file optionshandle_unit_test.cpp.
References CBlastOptionsHandle::GetMaxNumHspPerSequence(), CBlastOptionsHandle::SetMaxNumHspPerSequence(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [38/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_MismatchPenalty_BlastNucl | , |
| BlastNuclOptionsHandleFixture | |||
| ) |
Definition at line 747 of file optionshandle_unit_test.cpp.
References CBlastNucleotideOptionsHandle::GetMismatchPenalty(), CBlastNucleotideOptionsHandle::SetMismatchPenalty(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [39/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_PercentIdentity_Universal | , |
| UniversalOptiosHandleFixture | |||
| ) |
Definition at line 162 of file optionshandle_unit_test.cpp.
References CBlastOptionsHandle::GetPercentIdentity(), CBlastOptionsHandle::SetPercentIdentity(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [40/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_QueryCoverageHspPercentage | , |
| BlastNuclOptionsHandleFixture | |||
| ) |
Definition at line 929 of file optionshandle_unit_test.cpp.
References rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [41/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_RepeatFiltering_BlastNucl | , |
| BlastNuclOptionsHandleFixture | |||
| ) |
Definition at line 861 of file optionshandle_unit_test.cpp.
References CBlastNucleotideOptionsHandle::GetRepeatFiltering(), CBlastNucleotideOptionsHandle::SetRepeatFiltering(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [42/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_RepeatFilteringDB_BlastNucl | , |
| BlastNuclOptionsHandleFixture | |||
| ) |
Definition at line 871 of file optionshandle_unit_test.cpp.
References CBlastNucleotideOptionsHandle::GetRepeatFilteringDB(), and CBlastNucleotideOptionsHandle::SetRepeatFilteringDB().
◆ BOOST_FIXTURE_TEST_CASE() [43/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_SegFiltering_Protein | , |
| ProteinOptiosHandleFixture | |||
| ) |
Definition at line 441 of file optionshandle_unit_test.cpp.
References CBlastProteinOptionsHandle::GetSegFiltering(), CBlastProteinOptionsHandle::SetSegFiltering(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [44/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_SegFiltering_PSIBlast | , |
| PSIBlastOptiosHandleFixture | |||
| ) |
Definition at line 568 of file optionshandle_unit_test.cpp.
References CBlastProteinOptionsHandle::GetSegFiltering(), CBlastProteinOptionsHandle::SetSegFiltering(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [45/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_SegFilteringHicut_Protein | , |
| ProteinOptiosHandleFixture | |||
| ) |
Definition at line 487 of file optionshandle_unit_test.cpp.
References CBlastProteinOptionsHandle::GetSegFilteringHicut(), CBlastProteinOptionsHandle::SetSegFilteringHicut(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [46/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_SegFilteringLocut_Protein | , |
| ProteinOptiosHandleFixture | |||
| ) |
Definition at line 469 of file optionshandle_unit_test.cpp.
References CBlastProteinOptionsHandle::GetSegFilteringLocut(), CBlastProteinOptionsHandle::SetSegFilteringLocut(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [47/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_SegFilteringWindow_Protein | , |
| ProteinOptiosHandleFixture | |||
| ) |
Definition at line 451 of file optionshandle_unit_test.cpp.
References CBlastProteinOptionsHandle::GetSegFilteringWindow(), CBlastProteinOptionsHandle::SetSegFilteringWindow(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [48/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_SegFilteringWindow_PSIBlast | , |
| PSIBlastOptiosHandleFixture | |||
| ) |
Definition at line 578 of file optionshandle_unit_test.cpp.
References CBlastProteinOptionsHandle::GetSegFilteringWindow(), CBlastProteinOptionsHandle::SetSegFilteringWindow(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [49/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_SmithWatermanMode_AdvancedProtein | , |
| AdvancedProteinOptionsHandleFixture | |||
| ) |
Definition at line 610 of file optionshandle_unit_test.cpp.
References CBlastAdvancedProteinOptionsHandle::GetSmithWatermanMode(), CBlastAdvancedProteinOptionsHandle::SetSmithWatermanMode(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [50/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_StrandOption_BlastNucl | , |
| BlastNuclOptionsHandleFixture | |||
| ) |
Definition at line 652 of file optionshandle_unit_test.cpp.
References eNa_strand_minus, and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [51/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_TemplateLength_DiscNucleotide | , |
| DiscNucleotideOptionsHandleFixture | |||
| ) |
Definition at line 893 of file optionshandle_unit_test.cpp.
References CDiscNucleotideOptionsHandle::GetTemplateLength(), CDiscNucleotideOptionsHandle::SetTemplateLength(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [52/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_TemplateType_DiscNucleotide | , |
| DiscNucleotideOptionsHandleFixture | |||
| ) |
Definition at line 903 of file optionshandle_unit_test.cpp.
References CDiscNucleotideOptionsHandle::GetTemplateType(), CDiscNucleotideOptionsHandle::SetTemplateType(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [53/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_WindowSize_BlastNucl | , |
| BlastNuclOptionsHandleFixture | |||
| ) |
Definition at line 659 of file optionshandle_unit_test.cpp.
References CBlastOptionsHandle::GetWindowSize(), CBlastOptionsHandle::SetWindowSize(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [54/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_WindowSize_Protein | , |
| ProteinOptiosHandleFixture | |||
| ) |
Definition at line 381 of file optionshandle_unit_test.cpp.
References CBlastOptionsHandle::GetWindowSize(), CBlastOptionsHandle::SetWindowSize(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [55/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_WordSize_BlastNucl | , |
| BlastNuclOptionsHandleFixture | |||
| ) |
Definition at line 642 of file optionshandle_unit_test.cpp.
References CBlastNucleotideOptionsHandle::GetWordSize(), CBlastNucleotideOptionsHandle::SetWordSize(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [56/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_WordSize_DiscNucleotide | , |
| DiscNucleotideOptionsHandleFixture | |||
| ) |
Definition at line 913 of file optionshandle_unit_test.cpp.
References CException::GetMsg(), CBlastNucleotideOptionsHandle::GetWordSize(), CDiscNucleotideOptionsHandle::SetWordSize(), util::strcmp(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [57/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_WordSize_Protein | , |
| ProteinOptiosHandleFixture | |||
| ) |
Definition at line 371 of file optionshandle_unit_test.cpp.
References CBlastProteinOptionsHandle::GetWordSize(), CBlastProteinOptionsHandle::SetWordSize(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [58/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_WordThreshold_Protein | , |
| ProteinOptiosHandleFixture | |||
| ) |
Definition at line 361 of file optionshandle_unit_test.cpp.
References CBlastProteinOptionsHandle::GetWordThreshold(), CBlastProteinOptionsHandle::SetWordThreshold(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [59/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_WordThreshold_PSIBlast | , |
| PSIBlastOptiosHandleFixture | |||
| ) |
Definition at line 548 of file optionshandle_unit_test.cpp.
References CBlastProteinOptionsHandle::GetWordThreshold(), CBlastProteinOptionsHandle::SetWordThreshold(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [60/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_XDropoff_BlastNucl | , |
| BlastNuclOptionsHandleFixture | |||
| ) |
Definition at line 669 of file optionshandle_unit_test.cpp.
References CBlastNucleotideOptionsHandle::GetXDropoff(), CBlastNucleotideOptionsHandle::SetXDropoff(), and rapidjson::value.
◆ BOOST_FIXTURE_TEST_CASE() [61/61]
| BOOST_FIXTURE_TEST_CASE | ( | Set_Get_XDropoff_Protein | , |
| ProteinOptiosHandleFixture | |||
| ) |
Definition at line 391 of file optionshandle_unit_test.cpp.
References CBlastProteinOptionsHandle::GetXDropoff(), CBlastProteinOptionsHandle::SetXDropoff(), and rapidjson::value.
◆ VerifyMutatorAccessor()
| void VerifyMutatorAccessor | ( | BC & | obj, |
| void(BC::*)(T) | mutator, | ||
| T(BC::*)(void) const | accessor, | ||
| T & | expected_value | ||
| ) |
Definition at line 60 of file optionshandle_unit_test.cpp.
References CALL_MEMBER_FUNCTION, and T.
Referenced by BOOST_FIXTURE_TEST_CASE().
