NCBI C++ ToolKit
Classes | Macros | Typedefs | Enumerations | Functions
Exceptions Hierarchy
+ Collaboration diagram for Exceptions Hierarchy:

Classes

class  CNcbiError
 
class  CExceptionArgs_Base
 
class  CExceptionArgsManip
 
class  CExceptionArgsManip_Wrapper
 Manipulator function wrapper. More...
 
class  CExceptionArgs< TErrCode >
 
class  CException
 
class  Module
 Module manipulator. More...
 
class  Retriable
 Retriable manipulator. More...
 
class  CExceptionReporter
 CExceptionReporter –. More...
 
class  CExceptionReporterStream
 CExceptionReporterStream –. More...
 
class  CCoreException
 CCoreException –. More...
 
class  CInvalidParamException
 CInvalidParamException –. More...
 
class  CErrnoAdapt
 
class  CLastErrorAdapt
 
class  CErrnoTemplExceptionEx< TBase, PErrCode, PErrStr >
 CErrnoTemplExceptionEx –. More...
 
class  CErrnoTemplException< TBase >
 CErrnoTemplException –. More...
 
class  CErrnoTemplException_Win< TBase >
 

Macros

#define THROWS_NONE
 Define THROWS macros for C++ exception specification. More...
 
#define THROWS(x)
 
#define ABORT_ON_THROW   "ABORT_ON_THROW"
 ABORT_ON_THROW controls if program should be aborted. More...
 
#define RETHROW_TRACE
 Rethrow trace. More...
 
#define THROW0_TRACE(exception_object)
 Throw trace. More...
 
#define THROW0p_TRACE(exception_object)
 Throw trace. More...
 
#define THROW0np_TRACE(exception_object)
 Throw trace. More...
 
#define THROW1_TRACE(exception_class, exception_arg)
 Throw trace. More...
 
#define THROW1p_TRACE(exception_class, exception_arg)
 Throw trace. More...
 
#define THROW1np_TRACE(exception_class, exception_arg)
 Throw trace. More...
 
#define THROW_TRACE(exception_class, exception_args)
 Throw trace. More...
 
#define THROWp_TRACE(exception_class, exception_args)
 Throw trace. More...
 
#define THROWnp_TRACE(exception_class, exception_args)
 Throw trace. More...
 
#define STD_CATCH(message)
 Standard handling of "exception"-derived exceptions. More...
 
#define STD_CATCH_ALL(message)
 Standard handling of "exception"-derived exceptions; catches non-standard exceptions and generates "unknown exception" for all other exceptions. More...
 
#define NCBI_CATCH(message)
 Catch CExceptions as well This macro is deprecated - use *_X or *_XX variant instead of it. More...
 
#define NCBI_CATCH_ALL(message)
 This macro is deprecated - use *_X or *_XX variant instead of it. More...
 
#define STD_CATCH_X(err_subcode, message)   STD_CATCH_XX(NCBI_USE_ERRCODE_X, err_subcode, message)
 Standard handling of "exception"-derived exceptions with default error code and given error subcode placed in diagnostics. More...
 
#define STD_CATCH_ALL_X(err_subcode, message)   STD_CATCH_ALL_XX(NCBI_USE_ERRCODE_X, err_subcode, message)
 Standard handling of "exception"-derived exceptions; catches non-standard exceptions and generates "unknown exception" for all other exceptions. More...
 
#define NCBI_CATCH_X(err_subcode, message)   NCBI_CATCH_XX(NCBI_USE_ERRCODE_X, err_subcode, message)
 Catch CExceptions as well with default error code and given error subcode placed in diagnostics. More...
 
#define NCBI_CATCH_ALL_X(err_subcode, message)   NCBI_CATCH_ALL_XX(NCBI_USE_ERRCODE_X, err_subcode, message)
 
#define STD_CATCH_XX(err_name, err_subcode, message)
 Standard handling of "exception"-derived exceptions with given error code name and given error subcode placed in diagnostics. More...
 
#define STD_CATCH_ALL_XX(err_name, err_subcode, message)
 Standard handling of "exception"-derived exceptions; catches non-standard exceptions and generates "unknown exception" for all other exceptions. More...
 
#define NCBI_CATCH_XX(err_name, err_subcode, message)
 Catch CExceptions as well with given error code name and given error subcode placed in diagnostics. More...
 
#define NCBI_CATCH_ALL_XX(err_name, err_subcode, message)
 
#define FORMAT(message)   NCBI_NS_NCBI::CNcbiOstrstreamToString(static_cast<NCBI_NS_NCBI::CNcbiOstrstream&>(NCBI_NS_NCBI::CNcbiOstrstream().flush() << message))
 Format message using iostreams library. More...
 
#define NCBI_EXCEPTION_VAR_EX(name, prev_exception_ptr, exception_class, err_code, message)
 Create an exception instance to be thrown later, given the exception class, previous exception pointer, error code and message string. More...
 
#define NCBI_EXCEPTION_VAR(name, exception_class, err_code, message)   NCBI_EXCEPTION_VAR_EX(name, 0, exception_class, err_code, message)
 Create an instance of the exception to be thrown later. More...
 
#define NCBI_EXCEPTION_THROW(exception_var)   throw (exception_var)
 Throw an existing exception object. More...
 
#define NCBI_EXCEPTION_EMPTY_NAME
 
#define NCBI_EXCEPTION(exception_class, err_code, message)
 Generic macro to make an exception, given the exception class, error code and message string. More...
 
#define NCBI_THROW(exception_class, err_code, message)
 Generic macro to throw an exception, given the exception class, error code and message string. More...
 
#define NCBI_USER_THROW(message)   NCBI_THROW(NCBI_NS_NCBI::CException, eUnknown, message)
 Throw a quick-and-dirty runtime exception of type 'CException' with the given error message and error code 'eUnknown'. More...
 
#define NCBI_THROW_FMT(exception_class, err_code, message)   NCBI_THROW(exception_class, err_code, FORMAT(message))
 The same as NCBI_THROW but with message processed as output to ostream. More...
 
#define NCBI_USER_THROW_FMT(message)   NCBI_THROW_FMT(NCBI_NS_NCBI::CException, eUnknown, message)
 Throw a "user exception" with message processed as output to ostream. More...
 
#define NCBI_EXCEPTION_EX(prev_exception, exception_class, err_code, message)
 Generic macro to make an exception, given the exception class, previous exception, error code and message string. More...
 
#define NCBI_RETHROW(prev_exception, exception_class, err_code, message)
 Generic macro to re-throw an exception. More...
 
#define NCBI_RETHROW_FMT(prev_exception, exception_class, err_code, message)   NCBI_RETHROW(prev_exception, exception_class, err_code, FORMAT(message))
 The same as NCBI_RETHROW but with message processed as output to ostream. More...
 
#define NCBI_RETHROW_SAME(prev_exception, message)
 Generic macro to re-throw the same exception. More...
 
#define NCBI_REPORT_EXCEPTION(title, ex)
 Generate a report on the exception. More...
 
#define NCBI_REPORT_EXCEPTION_X(err_subcode, title, ex)   NCBI_REPORT_EXCEPTION_XX(NCBI_USE_ERRCODE_X, err_subcode, title, ex)
 Generate a report on the exception with default error code and given subcode. More...
 
#define NCBI_REPORT_EXCEPTION_XX(err_name, err_subcode, title, ex)
 Generate a report on the exception with default error code and given subcode. More...
 
#define NCBI_EXCEPTION_DEFAULT_THROW(exception_class)
 
#define NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON(exception_class, base_class)
 
#define NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION(exception_class, base_class)
 Helper macro for default exception implementation. More...
 
#define NCBI_EXCEPTION_DEFAULT(exception_class, base_class)
 To help declare new exception class. More...
 
#define NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_TEMPL(exception_class, base_class)
 Helper macro added to support templatized exceptions. More...
 
#define NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_TEMPL_ERRNO(exception_class, base_class)
 Helper macro added to support errno based templatized exceptions. More...
 
#define EXCEPTION_VIRTUAL_BASE
 Do not use virtual base classes in exception declaration at all, because in this case derived class should initialize all base classes directly, that is not convenient and hard to control. More...
 
#define NCBI_ERRNO_CODE_WRAPPER   NCBI_NS_NCBI::CErrnoAdapt::GetErrCode
 
#define NCBI_ERRNO_STR_WRAPPER   NCBI_NS_NCBI::CErrnoAdapt::GetErrCodeString
 
#define NCBI_LASTERROR_CODE_WRAPPER   NCBI_NS_NCBI::CLastErrorAdapt::GetErrCode
 
#define NCBI_LASTERROR_STR_WRAPPER   NCBI_NS_NCBI::CLastErrorAdapt::GetErrCodeString
 
#define NCBI_EXCEPTION2_VAR(name, exception_class, err_code, message, extra)
 Create an instance of the exception with one additional parameter. More...
 
#define NCBI_EXCEPTION2(exception_class, err_code, message, extra)
 Generic macro to make an exception with one additional parameter, given the exception class, error code and message string. More...
 
#define NCBI_THROW2(exception_class, err_code, message, extra)   throw NCBI_EXCEPTION2(exception_class, err_code, message, extra)
 Throw exception with extra parameter. More...
 
#define NCBI_RETHROW2(prev_exception, exception_class, err_code, message, extra)
 Re-throw exception with extra parameter. More...
 
#define NCBI_EXCEPTION_DEFAULT2(exception_class, base_class, extra_type)
 Define exception default with one additional parameter. More...
 
#define isnan   _isnan
 Define value of isnan (Is Not A Number). More...
 
#define finite   _finite
 Define value of finite (Is Finite). More...
 

Typedefs

typedef void(* FExceptionArgsManip) (CExceptionArgs_Base &)
 
typedef int(* TErrorCode) (void)
 Define function type for "error code" function. More...
 
typedef const char *(* TErrorStr) (int errnum)
 Define function type for "error str" function. More...
 

Enumerations

enum  CNcbiError::ECode {
  CNcbiError::eNotSet = -1, CNcbiError::eSuccess = 0, CNcbiError::eAddressFamilyNotSupported = EAFNOSUPPORT, CNcbiError::eAddressInUse = EADDRINUSE,
  CNcbiError::eAddressNotAvailable = EADDRNOTAVAIL, CNcbiError::eAlreadyConnected = EISCONN, CNcbiError::eArgumentListTooLong = E2BIG, CNcbiError::eArgumentOutOfDomain = EDOM,
  CNcbiError::eBadAddress = EFAULT, CNcbiError::eBadFileDescriptor = EBADF, CNcbiError::eBadMessage = EBADMSG, CNcbiError::eBrokenPipe = EPIPE,
  CNcbiError::eConnectionAborted = ECONNABORTED, CNcbiError::eConnectionAlreadyInProgress = EALREADY, CNcbiError::eConnectionRefused = ECONNREFUSED, CNcbiError::eConnectionReset = ECONNRESET,
  CNcbiError::eCrossDeviceLink = EXDEV, CNcbiError::eDestinationAddressRequired = EDESTADDRREQ, CNcbiError::eDeviceOrResourceBusy = EBUSY, CNcbiError::eDirectoryNotEmpty = ENOTEMPTY,
  CNcbiError::eExecutableFormatError = ENOEXEC, CNcbiError::eFileExists = EEXIST, CNcbiError::eFileTooLarge = EFBIG, CNcbiError::eFilenameTooLong = ENAMETOOLONG,
  CNcbiError::eFunctionNotSupported = ENOSYS, CNcbiError::eHostUnreachable = EHOSTUNREACH, CNcbiError::eIdentifierRemoved = EIDRM, CNcbiError::eIllegalByteSequence = EILSEQ,
  CNcbiError::eInappropriateIoControlOperation = ENOTTY, CNcbiError::eInterrupted = EINTR, CNcbiError::eInvalidArgument = EINVAL, CNcbiError::eInvalidSeek = ESPIPE,
  CNcbiError::eIoError = EIO, CNcbiError::eIsADirectory = EISDIR, CNcbiError::eMessageSize = EMSGSIZE, CNcbiError::eNetworkDown = ENETDOWN,
  CNcbiError::eNetworkReset = ENETRESET, CNcbiError::eNetworkUnreachable = ENETUNREACH, CNcbiError::eNoBufferSpace = ENOBUFS, CNcbiError::eNoChildProcess = ECHILD,
  CNcbiError::eNoLink = ENOLINK, CNcbiError::eNoLockAvailable = ENOLCK, CNcbiError::eNoMessage = ENOMSG, CNcbiError::eNoProtocolOption = ENOPROTOOPT,
  CNcbiError::eNoSpaceOnDevice = ENOSPC, CNcbiError::eNoSuchDeviceOrAddress = ENXIO, CNcbiError::eNoSuchDevice = ENODEV, CNcbiError::eNoSuchFileOrDirectory = ENOENT,
  CNcbiError::eNoSuchProcess = ESRCH, CNcbiError::eNotADirectory = ENOTDIR, CNcbiError::eNotASocket = ENOTSOCK, CNcbiError::eNotConnected = ENOTCONN,
  CNcbiError::eNotEnoughMemory = ENOMEM, CNcbiError::eNotSupported = ENOTSUP, CNcbiError::eOperationCanceled = ECANCELED, CNcbiError::eOperationInProgress = EINPROGRESS,
  CNcbiError::eOperationNotPermitted = EPERM, CNcbiError::eOperationNotSupported = EOPNOTSUPP, CNcbiError::eOperationWouldBlock = EWOULDBLOCK, CNcbiError::ePermissionDenied = EACCES,
  CNcbiError::eProtocolError = EPROTO, CNcbiError::eProtocolNotSupported = EPROTONOSUPPORT, CNcbiError::eReadOnlyFileSystem = EROFS, CNcbiError::eResourceDeadlockWouldOccur = EDEADLK,
  CNcbiError::eResourceUnavailableTryAgain = EAGAIN, CNcbiError::eResultOutOfRange = ERANGE, CNcbiError::eTextFileBusy = ETXTBSY, CNcbiError::eTimedOut = ETIMEDOUT,
  CNcbiError::eTooManyFilesOpenInSystem = ENFILE, CNcbiError::eTooManyFilesOpen = EMFILE, CNcbiError::eTooManyLinks = EMLINK, CNcbiError::eTooManySymbolicLinkLevels = ELOOP,
  CNcbiError::eValueTooLarge = EOVERFLOW, CNcbiError::eWrongProtocolType = EPROTOTYPE, CNcbiError::eUnknown = 0x1000
}
 
enum  CNcbiError::ECategory { CNcbiError::eGeneric = 0, CNcbiError::eNcbi = 1, CNcbiError::eMsWindows = 2 }
 Error code category. More...
 
enum  CException::EErrCode { CException::eInvalid = -1, CException::eUnknown = 0 }
 Error types that an application can generate. More...
 
enum  CException::EFlags { CException::fConsole = (1 << 0) }
 Miscellaneous generic hints, flags and attributes. More...
 
enum  CCoreException::EErrCode {
  CCoreException::eCore, CCoreException::eNullPtr, CCoreException::eDll, CCoreException::eDiagFilter,
  CCoreException::eInvalidArg
}
 Error types that corelib can generate. More...
 
enum  CInvalidParamException::EErrCode { CInvalidParamException::eUndefined = 1, CInvalidParamException::eInvalidCharacter }
 
enum  CErrnoTemplExceptionEx< TBase, PErrCode, PErrStr >::EErrCode { CErrnoTemplExceptionEx< TBase, PErrCode, PErrStr >::eErrno }
 Error type that an application can generate. More...
 

Functions

CNcbiOstreamoperator<< (CNcbiOstream &str, const CNcbiError &err)
 Serialize error code + description provided by OS + extra string data. More...
 
void SetThrowTraceAbort (bool abort_on_throw_trace)
 Specify whether to call "abort()" inside the DoThrowTraceAbort(). More...
 
void DoThrowTraceAbort (void)
 "abort()" the program if set by SetThrowTraceAbort() or $ABORT_ON_THROW. More...
 
void DoDbgPrint (const CDiagCompileInfo &info, const char *message)
 Print the specified debug message. More...
 
void DoDbgPrint (const CDiagCompileInfo &info, const string &message)
 Print the specified debug message. More...
 
void DoDbgPrint (const CDiagCompileInfo &info, const char *msg1, const char *msg2)
 Print the specified debug messages. More...
 
template<typename T >
const TDbgPrint (const CDiagCompileInfo &info, const T &e, const char *e_str)
 Templated function for printing debug message. More...
 
const char * DbgPrint (const CDiagCompileInfo &info, const char *e, const char *)
 Print debug message for "const char*" object. More...
 
char * DbgPrint (const CDiagCompileInfo &info, char *e, const char *)
 Print debug message for "char*" object. More...
 
const stringDbgPrint (const CDiagCompileInfo &info, const string &e, const char *)
 Print debug message for "std::string" object. More...
 
template<typename T >
const TDbgPrintP (const CDiagCompileInfo &info, const T &e, const char *e_str)
 Create diagnostic stream for printing specified message and "abort()" the program if set by SetThrowTraceAbort() or $ABORT_ON_THROW. More...
 
template<typename T >
const TDbgPrintNP (const CDiagCompileInfo &info, const T &e, const char *e_str)
 Create diagnostic stream for printing specified message. More...
 
template<class TErrCode >
CExceptionArgs< TErrCode > operator| (TErrCode err_code, const CExceptionArgsManip &manip)
 Exception manipulators. Can be combined with error code using operator|(). More...
 
template<class TErrCode >
CExceptionArgs< TErrCode > operator| (TErrCode err_code, const CExceptionArgsManip_Wrapper &manip)
 
void Console (CExceptionArgs_Base &args)
 
void Trace (CExceptionArgs_Base &args)
 
void Info (CExceptionArgs_Base &args)
 
void Warning (CExceptionArgs_Base &args)
 
void Error (CExceptionArgs_Base &args)
 
void Critical (CExceptionArgs_Base &args)
 
void Fatal (CExceptionArgs_Base &args)
 
template<class TTo , class TFrom >
const TTo * UppermostCast (const TFrom &from)
 Return valid pointer to uppermost derived class only if "from" is _really_ the object of the desired type. More...
 
const char * Ncbi_strerror (int errnum)
 

Detailed Description

Macro Definition Documentation

#define ABORT_ON_THROW   "ABORT_ON_THROW"

ABORT_ON_THROW controls if program should be aborted.

Definition at line 79 of file ncbiexpt.hpp.

Referenced by CNcbiApplication::AppMain(), DoThrowTraceAbort(), and CNcbiApplication::x_HonorStandardSettings().

#define EXCEPTION_VIRTUAL_BASE

Do not use virtual base classes in exception declaration at all, because in this case derived class should initialize all base classes directly, that is not convenient and hard to control.

Deprecated:

Definition at line 1250 of file ncbiexpt.hpp.

#define finite   _finite
#define FORMAT (   message)    NCBI_NS_NCBI::CNcbiOstrstreamToString(static_cast<NCBI_NS_NCBI::CNcbiOstrstream&>(NCBI_NS_NCBI::CNcbiOstrstream().flush() << message))
#define isnan   _isnan
#define NCBI_CATCH (   message)
Value:
catch (NCBI_NS_NCBI::CException& e) { \
NCBI_REPORT_EXCEPTION(message, e); \
} \
STD_CATCH(message)
#define NCBI_REPORT_EXCEPTION(title, ex)
Generate a report on the exception.
Definition: ncbiexpt.hpp:598
#define STD_CATCH(message)
Standard handling of "exception"-derived exceptions.
Definition: ncbiexpt.hpp:400

Catch CExceptions as well This macro is deprecated - use *_X or *_XX variant instead of it.

Definition at line 420 of file ncbiexpt.hpp.

Referenced by CGBDocument::AttachDataLoader(), CSelectionService::Broadcast(), CProjectView::BroadcastVisibleRange(), CLabelDescriptionCache::CacheSeqId(), CWorkspaceAutoSaver::CheckCrash(), CGuiObjectInfoSeq_loc::CreateObject(), CGraphTrackFactory::CreateTracks(), CGBDocument::DetachDataLoader(), CEventHandler::Dispatch(), CWinMaskerFileStorage::GetTaxIds(), CTMSUtils::GetTrackMetaData(), CGraphicPanel::InitObject(), CWndLayoutReg::Load(), CEventHandler::OnEvent(), CwxNCBIApp::OnIdle(), impl::CDriverContext::ReadDBConfParams(), ReadProject(), CNCBIwxApplication::Run(), CTrackInitializationJob::Run(), s_AddOneDataFile(), s_CallExtensionProjectItemAttached(), s_CallExtensionProjectItemCreated(), s_CallExtensionProjectItemDetached(), s_CreateObjList(), s_GetAccessions(), s_GetAssemblies(), s_InitializeInstitutionCollectionCodeMaps(), s_InitializeOrgRefMap(), CWndLayoutReg::Save(), CProjectView::SetSelection(), CAppJobDispatcher::ShutDown(), CSeqGraphicPane::TTHH_GetTooltip(), CMappingObjectLoader::x_CreateMapper(), COpenViewManager::x_DoConversion(), COrfSearchJob::x_DoSearch(), CSeqGraphicRenderer::x_Draw(), CSeqGraphicRenderer::x_DrawPdf(), CSeqTableInfo::x_Initialize(), CWorkspaceAutoSaver::x_OnSave(), CDockManager::x_ReadLayout(), CSchedulerEngine::x_RunJob(), and CWorkspaceAutoSaver::x_SaveWorkspace().

#define NCBI_CATCH_ALL (   message)
Value:
catch (NCBI_NS_NCBI::CException& e) { \
NCBI_REPORT_EXCEPTION(message, e); \
} \
#define NCBI_REPORT_EXCEPTION(title, ex)
Generate a report on the exception.
Definition: ncbiexpt.hpp:598
#define STD_CATCH_ALL(message)
Standard handling of "exception"-derived exceptions; catches non-standard exceptions and generates "u...
Definition: ncbiexpt.hpp:410

This macro is deprecated - use *_X or *_XX variant instead of it.

Definition at line 427 of file ncbiexpt.hpp.

Referenced by CBlobStorage_NetCache::~CBlobStorage_NetCache(), CFileIO::~CFileIO(), and SNetStorageObjectImpl::~SNetStorageObjectImpl().

#define NCBI_CATCH_ALL_X (   err_subcode,
  message 
)    NCBI_CATCH_ALL_XX(NCBI_USE_ERRCODE_X, err_subcode, message)
See also
STD_CATCH_ALL_X, NCBI_DEFINE_ERRCODE_X, ERR_POST_X

Definition at line 459 of file ncbiexpt.hpp.

Referenced by CWorkerNodeCleanup::CallEventHandlers(), CConnIniter::CConnIniter(), CODBCContextRegistry::ClearAll(), CWorkerNodeJobContext::CloseStreams(), CONNECT_Init(), CWorkerNodeIdleThread::Main(), CThreadPool_ServiceThread::Main(), CServerConnectionRequest::Process(), s_LOCK_Cleanup(), s_LOCK_Handler(), s_LOG_Handler(), s_REG_Cleanup(), s_REG_Get(), s_REG_Set(), CThread::Wrapper(), SGridWorkerNodeImpl::x_NotifyJobWatchers(), CCgiRequest::x_ProcessInputStream(), NWinHook::CApiHookMgr::~CApiHookMgr(), CAutoTrans::~CAutoTrans(), CBlobIStream::~CBlobIStream(), CBlobOStream::~CBlobOStream(), CBlobStreamHelper::~CBlobStreamHelper(), CByteStreamBuf::~CByteStreamBuf(), CCallableStatement::~CCallableStatement(), python::CCallableStmtHelper::~CCallableStmtHelper(), CConnection::~CConnection(), python::CConnection::~CConnection(), CCursor::~CCursor(), python::CCursor::~CCursor(), CDataSource::~CDataSource(), CDB_BCPInCmd::~CDB_BCPInCmd(), CDB_Connection::~CDB_Connection(), CDB_CursorCmd::~CDB_CursorCmd(), CDB_LangCmd::~CDB_LangCmd(), CDB_Result::~CDB_Result(), CDB_ResultProcessor::~CDB_ResultProcessor(), CDB_RPCCmd::~CDB_RPCCmd(), CDB_SendDataCmd::~CDB_SendDataCmd(), CDB_Stream::~CDB_Stream(), CDB_UserHandler_Diag::~CDB_UserHandler_Diag(), CDB_UserHandler_Stream::~CDB_UserHandler_Stream(), CDBAPIBulkInsert::~CDBAPIBulkInsert(), impl::CDBExceptionStorage::~CDBExceptionStorage(), CDriverManager::~CDriverManager(), NWinHook::CHookedFunction::~CHookedFunction(), CMemStore::~CMemStore(), NWinHook::CModuleInstance::~CModuleInstance(), CMySQL_Connection::~CMySQL_Connection(), CMySQL_LangCmd::~CMySQL_LangCmd(), CNetCacheReader::~CNetCacheReader(), CNetCacheWriter::~CNetCacheWriter(), CODBC_BCPInCmd::~CODBC_BCPInCmd(), CODBC_Connection::~CODBC_Connection(), CODBC_CursorCmd::~CODBC_CursorCmd(), CODBC_CursorCmdExpl::~CODBC_CursorCmdExpl(), CODBC_CursorResult::~CODBC_CursorResult(), CODBC_LangCmd::~CODBC_LangCmd(), CODBC_RowResult::~CODBC_RowResult(), CODBC_RPCCmd::~CODBC_RPCCmd(), CODBC_SendDataCmd::~CODBC_SendDataCmd(), CODBCContext::~CODBCContext(), CODBCContextRegistry::~CODBCContextRegistry(), ctlib::Command::~Command(), NWinHook::COnExitProcess::~COnExitProcess(), ctlib::Connection::~Connection(), NWinHook::CPEi386::~CPEi386(), NWinHook::CPsapiHandler::~CPsapiHandler(), CRemoteAppRequest::~CRemoteAppRequest(), CRemoteAppResult::~CRemoteAppResult(), impl::CResult::~CResult(), CResultSet::~CResultSet(), CResultSetMetaData::~CResultSetMetaData(), CRWStreambuf::~CRWStreambuf(), CStatement::~CStatement(), CStatementBase::~CStatementBase(), python::CStmtHelper::~CStmtHelper(), NWinHook::CTaskManager::~CTaskManager(), CTL_BCPInCmd::~CTL_BCPInCmd(), CTL_Cmd::~CTL_Cmd(), CTL_Connection::~CTL_Connection(), CTL_CursorCmd::~CTL_CursorCmd(), CTL_CursorCmdExpl::~CTL_CursorCmdExpl(), CTL_CursorResult::~CTL_CursorResult(), CTL_CursorResultExpl::~CTL_CursorResultExpl(), CTL_LangCmd::~CTL_LangCmd(), CTL_LRCmd::~CTL_LRCmd(), CTL_RowResult::~CTL_RowResult(), CTL_RPCCmd::~CTL_RPCCmd(), CTL_SendDataCmd::~CTL_SendDataCmd(), CTLibContext::~CTLibContext(), CTLibContextRegistry::~CTLibContextRegistry(), python::CTransaction::~CTransaction(), CVariant::~CVariant(), and CxBlobWriter::~CxBlobWriter().

#define NCBI_CATCH_ALL_XX (   err_name,
  err_subcode,
  message 
)
Value:
catch (NCBI_NS_NCBI::CException& e) { \
NCBI_REPORT_EXCEPTION_XX(err_name, err_subcode, message, e); \
} \
STD_CATCH_ALL_XX(err_name, err_subcode, message)
#define STD_CATCH_ALL_XX(err_name, err_subcode, message)
Standard handling of "exception"-derived exceptions; catches non-standard exceptions and generates "u...
Definition: ncbiexpt.hpp:481
#define NCBI_REPORT_EXCEPTION_XX(err_name, err_subcode, title, ex)
Generate a report on the exception with default error code and given subcode.
Definition: ncbiexpt.hpp:609
See also
STD_CATCH_X, NCBI_DEFINE_ERRCODE_X, ERR_POST_XX

Definition at line 501 of file ncbiexpt.hpp.

#define NCBI_CATCH_X (   err_subcode,
  message 
)    NCBI_CATCH_XX(NCBI_USE_ERRCODE_X, err_subcode, message)

Catch CExceptions as well with default error code and given error subcode placed in diagnostics.

See also
STD_CATCH_X, NCBI_DEFINE_ERRCODE_X, ERR_POST_X

Definition at line 455 of file ncbiexpt.hpp.

Referenced by CThread::Wrapper(), CNcbiApplication::x_HonorStandardSettings(), CIStreamBuffer::~CIStreamBuffer(), CObjectOStream::~CObjectOStream(), and COStreamBuffer::~COStreamBuffer().

#define NCBI_CATCH_XX (   err_name,
  err_subcode,
  message 
)
Value:
catch (NCBI_NS_NCBI::CException& e) { \
NCBI_REPORT_EXCEPTION_XX(err_name, err_subcode, message, e); \
} \
STD_CATCH_XX(err_name, err_subcode, message)
#define STD_CATCH_XX(err_name, err_subcode, message)
Standard handling of "exception"-derived exceptions with given error code name and given error subcod...
Definition: ncbiexpt.hpp:467
#define NCBI_REPORT_EXCEPTION_XX(err_name, err_subcode, title, ex)
Generate a report on the exception with default error code and given subcode.
Definition: ncbiexpt.hpp:609

Catch CExceptions as well with given error code name and given error subcode placed in diagnostics.

See also
STD_CATCH_X, NCBI_DEFINE_ERRCODE_X, ERR_POST_XX

Definition at line 494 of file ncbiexpt.hpp.

#define NCBI_ERRNO_CODE_WRAPPER   NCBI_NS_NCBI::CErrnoAdapt::GetErrCode
#define NCBI_ERRNO_STR_WRAPPER   NCBI_NS_NCBI::CErrnoAdapt::GetErrCodeString
#define NCBI_EXCEPTION (   exception_class,
  err_code,
  message 
)
Value:
exception_class, err_code, message)
#define NCBI_EXCEPTION_EMPTY_NAME
Definition: ncbiexpt.hpp:533
#define NCBI_EXCEPTION_VAR(name, exception_class, err_code, message)
Create an instance of the exception to be thrown later.
Definition: ncbiexpt.hpp:526

Generic macro to make an exception, given the exception class, error code and message string.

Definition at line 538 of file ncbiexpt.hpp.

#define NCBI_EXCEPTION2 (   exception_class,
  err_code,
  message,
  extra 
)
Value:
exception_class, err_code, message, extra)
#define NCBI_EXCEPTION_EMPTY_NAME
Definition: ncbiexpt.hpp:533
#define NCBI_EXCEPTION2_VAR(name, exception_class, err_code, message, extra)
Create an instance of the exception with one additional parameter.
Definition: ncbiexpt.hpp:1609

Generic macro to make an exception with one additional parameter, given the exception class, error code and message string.

Definition at line 1615 of file ncbiexpt.hpp.

#define NCBI_EXCEPTION2_VAR (   name,
  exception_class,
  err_code,
  message,
  extra 
)
Value:
exception_class name(DIAG_COMPILE_INFO, 0, \
exception_class::err_code, (message), (extra) )
#define DIAG_COMPILE_INFO
Make compile time diagnostic information object to use in CNcbiDiag and CException.
Definition: ncbidiag.hpp:169

Create an instance of the exception with one additional parameter.

Definition at line 1609 of file ncbiexpt.hpp.

#define NCBI_EXCEPTION_DEFAULT (   exception_class,
  base_class 
)

To help declare new exception class.

This can be used ONLY if the derived class does not have any additional (non-standard) data members.

Definition at line 1159 of file ncbiexpt.hpp.

#define NCBI_EXCEPTION_DEFAULT2 (   exception_class,
  base_class,
  extra_type 
)
Value:
public: \
exception_class(const CDiagCompileInfo &info, \
const CException* prev_exception, \
EErrCode err_code,const string& message, \
extra_type extra_param, EDiagSev severity = eDiag_Error) \
: base_class(info, prev_exception, \
(message), extra_param, severity, 0) \
NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION(exception_class, base_class)
#define NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION(exception_class, base_class)
Helper macro for default exception implementation.
Definition: ncbiexpt.hpp:1144
EDiagSev
Severity level for the posted diagnostics.
Definition: ncbidiag.hpp:644
Incapsulate compile time information such as __FILE__, __LINE__, NCBI_MODULE, current function...
Definition: ncbidiag.hpp:63
Error message.
Definition: ncbidiag.hpp:647
static MDB_envinfo info
Definition: mdb_load.c:37

Define exception default with one additional parameter.

Required to define exception default with one additional parameter (e.g. derived from CParseException).

Definition at line 1639 of file ncbiexpt.hpp.

#define NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION (   exception_class,
  base_class 
)
Value:
{ \
x_Init(info, message, prev_exception, severity); \
x_InitErrCode((CException::EErrCode) err_code); \
} \
NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON(exception_class, base_class) \
private: \
/* for the sake of semicolon at the end of macro...*/ \
static void xx_unused_##exception_class(void)
static MDB_envinfo info
Definition: mdb_load.c:37
#define NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON(exception_class, base_class)
Definition: ncbiexpt.hpp:1116
EErrCode
Error types that an application can generate.
Definition: ncbiexpt.hpp:728

Helper macro for default exception implementation.

See also
NCBI_EXCEPTION_DEFAULT

Definition at line 1144 of file ncbiexpt.hpp.

#define NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON (   exception_class,
  base_class 
)
Value:
exception_class(const exception_class& other) \
: base_class(other) \
{ \
this->x_Assign(other); \
} \
public: \
virtual ~exception_class(void) throw() {} \
virtual const char* GetType(void) const {return #exception_class;} \
typedef int TErrCode; \
TErrCode GetErrCode(void) const \
{ \
return typeid(*this) == typeid(exception_class) ? \
(TErrCode) this->x_GetErrCode() : \
(TErrCode) CException::eInvalid; \
} \
protected: \
exception_class(void) {} \
virtual const CException* x_Clone(void) const \
{ \
return new exception_class(*this); \
} \
#define NCBI_EXCEPTION_DEFAULT_THROW(exception_class)
Definition: ncbiexpt.hpp:1109
#define const
Definition: zconf.h:217

Definition at line 1116 of file ncbiexpt.hpp.

#define NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_TEMPL (   exception_class,
  base_class 
)
Value:
{ \
this->x_Init(info, message, prev_exception, severity); \
this->x_InitErrCode((typename CException::EErrCode) err_code); \
} \
static MDB_envinfo info
Definition: mdb_load.c:37
#define NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON(exception_class, base_class)
Definition: ncbiexpt.hpp:1116
EErrCode
Error types that an application can generate.
Definition: ncbiexpt.hpp:728

Helper macro added to support templatized exceptions.

GCC starting from 3.2.2 warns about implicit typenames - this macro fixes the warning.

Definition at line 1200 of file ncbiexpt.hpp.

#define NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_TEMPL_ERRNO (   exception_class,
  base_class 
)
Value:
{ \
this->x_Init(info, message, prev_exception, severity); \
this->x_InitErrCode((typename CException::EErrCode) err_code); \
} \
NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON(exception_class, base_class) \
public: \
virtual const char* GetErrCodeString(void) const \
{ \
switch (GetErrCode()) { \
case CParent::eErrno: return "eErrno"; \
default: return CException::GetErrCodeString(); \
} \
}
switch(yytype)
Definition: newick.tab.cpp:737
static MDB_envinfo info
Definition: mdb_load.c:37
#define NCBI_EXCEPTION_DEFAULT_IMPLEMENTATION_COMMON(exception_class, base_class)
Definition: ncbiexpt.hpp:1116
EErrCode
Error types that an application can generate.
Definition: ncbiexpt.hpp:728
#define const
Definition: zconf.h:217
virtual const char * GetErrCodeString(void) const
Get error code interpreted as text.
Definition: ncbiexpt.cpp:442

Helper macro added to support errno based templatized exceptions.

Definition at line 1209 of file ncbiexpt.hpp.

#define NCBI_EXCEPTION_DEFAULT_THROW (   exception_class)
Value:
NCBI_NORETURN virtual void Throw(void) const \
{ \
this->x_ThrowSanityCheck(typeid(exception_class), #exception_class); \
throw *this; \
}
#define NCBI_NORETURN
Definition: ncbiconf_msvc.h:73
#define const
Definition: zconf.h:217

Definition at line 1109 of file ncbiexpt.hpp.

#define NCBI_EXCEPTION_EMPTY_NAME

Definition at line 533 of file ncbiexpt.hpp.

#define NCBI_EXCEPTION_EX (   prev_exception,
  exception_class,
  err_code,
  message 
)
Value:
exception_class, err_code, message)
#define NCBI_EXCEPTION_EMPTY_NAME
Definition: ncbiexpt.hpp:533
#define NCBI_EXCEPTION_VAR_EX(name, prev_exception_ptr,exception_class, err_code, message)
Create an exception instance to be thrown later, given the exception class, previous exception pointe...
Definition: ncbiexpt.hpp:520

Generic macro to make an exception, given the exception class, previous exception, error code and message string.

Definition at line 572 of file ncbiexpt.hpp.

#define NCBI_EXCEPTION_THROW (   exception_var)    throw (exception_var)
#define NCBI_EXCEPTION_VAR (   name,
  exception_class,
  err_code,
  message 
)    NCBI_EXCEPTION_VAR_EX(name, 0, exception_class, err_code, message)

Create an instance of the exception to be thrown later.

Definition at line 526 of file ncbiexpt.hpp.

Referenced by CCgiContext::CheckStatus(), CBuildDatabase::EndBuild(), CObject::ThrowNullPointerException(), and CCgiApplication::VerifyCgiContext().

#define NCBI_EXCEPTION_VAR_EX (   name,
  prev_exception_ptr,
  exception_class,
  err_code,
  message 
)
Value:
exception_class name(DIAG_COMPILE_INFO, \
prev_exception_ptr, exception_class::err_code, (message))
#define DIAG_COMPILE_INFO
Make compile time diagnostic information object to use in CNcbiDiag and CException.
Definition: ncbidiag.hpp:169

Create an exception instance to be thrown later, given the exception class, previous exception pointer, error code and message string.

Definition at line 520 of file ncbiexpt.hpp.

#define NCBI_LASTERROR_CODE_WRAPPER   NCBI_NS_NCBI::CLastErrorAdapt::GetErrCode

Definition at line 1416 of file ncbiexpt.hpp.

#define NCBI_LASTERROR_STR_WRAPPER   NCBI_NS_NCBI::CLastErrorAdapt::GetErrCodeString

Definition at line 1418 of file ncbiexpt.hpp.

#define NCBI_REPORT_EXCEPTION (   title,
  ex 
)
#define NCBI_REPORT_EXCEPTION_X (   err_subcode,
  title,
  ex 
)    NCBI_REPORT_EXCEPTION_XX(NCBI_USE_ERRCODE_X, err_subcode, title, ex)
#define NCBI_REPORT_EXCEPTION_XX (   err_name,
  err_subcode,
  title,
  ex 
)
Value:
NCBI_CHECK_ERR_SUBCODE_X_NAME(err_name, err_subcode); \
NCBI_NS_NCBI::CExceptionReporter::ReportDefaultEx \
(NCBI_ERRCODE_X_NAME(err_name), err_subcode, \
#define DIAG_COMPILE_INFO
Make compile time diagnostic information object to use in CNcbiDiag and CException.
Definition: ncbidiag.hpp:169
Use global default flags (merge with).
Definition: ncbidiag.hpp:761
#define NCBI_CHECK_ERR_SUBCODE_X_NAME(name, subcode)
Issue compile-time error if error subcode given is not valid for given error code name...
Definition: ncbidiag.hpp:444
#define NCBI_ERRCODE_X_NAME(name)
Returns value of error code by its name defined by NCBI_DEFINE_ERRCODE_X.
Definition: ncbidiag.hpp:341

Generate a report on the exception with default error code and given subcode.

Definition at line 609 of file ncbiexpt.hpp.

Referenced by CThreadInPool< TRequest >::x_HandleOneRequest().

#define NCBI_RETHROW (   prev_exception,
  exception_class,
  err_code,
  message 
)
Value:
do { \
USING_SCOPE(NCBI_NS_NCBI::ncbi_ex_manip); \
throw NCBI_EXCEPTION_EX(prev_exception, exception_class, \
err_code, message); \
} while (0)
#define USING_SCOPE(ns)
Use the specified namespace.
Definition: ncbistl.hpp:76
#define NCBI_EXCEPTION_EX(prev_exception, exception_class, err_code, message)
Generic macro to make an exception, given the exception class, previous exception, error code and message string.
Definition: ncbiexpt.hpp:572

Generic macro to re-throw an exception.

The err_code argument may include manipulators to set additional options, e.g. eMyErrCode | Console | Severity(eDiag_Info). In any case the error code value must be the first in the combination.

Definition at line 580 of file ncbiexpt.hpp.

Referenced by CChecksum::AddFile(), CNcbiApplication::AppMain(), BlastSetupPreliminarySearchEx(), CArg_Boolean::CArg_Boolean(), CArg_DataSize::CArg_DataSize(), CArg_Double::CArg_Double(), CArg_Int8::CArg_Int8(), CheckForFreqRatioFile(), CSeqMaskerOstatFactory::create(), CSeqMaskerIstatFactory::create(), CRpsMmappedFile::CRpsMmappedFile(), CSequenceIStreamBlastDB::CSequenceIStreamBlastDB(), CAppJobDispatcher::DeleteJob(), CCgiSession_NetCache::GetAttribute(), CId1Reader::GetBlob(), CCgiRequest::GetContentLength(), CCgiRequest::GetSession(), CReader::OpenInitialConnection(), CMemberInfoFunctions::ReadWithDefaultMemberX(), CMemberInfoFunctions::ReadWithSetFlagMember(), CBlastFormatterApp::Run(), CNetScheduleAdmin::StatusSnapshot(), CId2Reader::x_ConnectAtSlot(), CBuildDatabase::x_EndBuild(), CBlastRPSInfo::x_Init(), CCgiRequest::x_Init(), CPubseq2Reader::x_InitConnection(), CId2Reader::x_InitConnection(), CArgDescriptions::x_PreCheck(), CId2ReaderBase::x_ProcessPacket(), CId2ReaderBase::x_ReceiveFromConnection(), CId2ReaderBase::x_ReceiveID2ReplyStage(), CId1Reader::x_ReceiveReply(), CId2ReaderBase::x_SendID2Packet(), CId1Reader::x_SendRequest(), CId2ReaderBase::x_SendToConnection(), and CAppJobDispatcher::x_StartJob().

#define NCBI_RETHROW2 (   prev_exception,
  exception_class,
  err_code,
  message,
  extra 
)
Value:
throw exception_class(DIAG_COMPILE_INFO, \
&(prev_exception), exception_class::err_code, (message), (extra))
#define DIAG_COMPILE_INFO
Make compile time diagnostic information object to use in CNcbiDiag and CException.
Definition: ncbidiag.hpp:169

Re-throw exception with extra parameter.

Required to re-throw exceptions with one additional parameter (e.g. positional information for CParseException).

Definition at line 1630 of file ncbiexpt.hpp.

Referenced by CRR_Field< TTraits >::Get(), CMacroBioData_FeatIterBase::GetBioseqHandle(), IRegistry::GetEncryptedString(), CRR_Util::GetFieldValueConverted(), s_GetDecryptedKey(), CRowReader< TTraits >::Validate(), CRR_Util::ValidateBasicTypeFieldValue(), CConfigRegistry::x_Get(), CRR_Row< TTraits >::x_GetFieldIndex(), CRowReader< TTraits >::x_GetRowData(), CConfigRegistry::x_HasEntry(), CRowReader< TTraits >::x_OnEvent(), and CRowReader< TTraits >::x_ReadNextRow().

#define NCBI_RETHROW_FMT (   prev_exception,
  exception_class,
  err_code,
  message 
)    NCBI_RETHROW(prev_exception, exception_class, err_code, FORMAT(message))

The same as NCBI_RETHROW but with message processed as output to ostream.

Definition at line 588 of file ncbiexpt.hpp.

Referenced by CWGSFileInfo::CWGSFileInfo(), SFileTrackRequest::GetFileInfo(), SFileTrackAPI::GetPath(), and CGBDataLoader::x_CreateDriver().

#define NCBI_RETHROW_SAME (   prev_exception,
  message 
)
Value:
do { prev_exception.AddBacklog(DIAG_COMPILE_INFO, message, \
prev_exception.GetSeverity()); \
throw; } while (0)
#define DIAG_COMPILE_INFO
Make compile time diagnostic information object to use in CNcbiDiag and CException.
Definition: ncbidiag.hpp:169

Generic macro to re-throw the same exception.

Definition at line 592 of file ncbiexpt.hpp.

Referenced by CMiscSeqTable::ApplyTableToEntry(), variation_ref::CHgvsParser::AsVariationFeat(), BlastFormatter_PreFetchSequenceData(), CEnumeratedTypeInfo::CopyEnum(), CCodeGenerator::ExternalResolve(), IRegistry::GetBool(), CSetTypeStrings::GetDestructionCode(), CListTypeStrings::GetDestructionCode(), CMapTypeStrings::GetDestructionCode(), IRegistry::GetDouble(), IRegistry::GetInt(), variation::CVariationUtil::CVariantPropertiesIndex::GetLocationProperties(), CObjectIStream::HandleEOF(), DTDParser::Module(), ASNParser::ModuleBody(), CDataTool::ProcessData(), ProjectExon_newlogic(), CEnumeratedTypeInfo::ReadEnum(), CMemberInfoFunctions::ReadWithDefaultMemberX(), CMemberInfoFunctions::ReadWithSetFlagMember(), CCodeGenerator::ResolveInAnyModule(), CReferenceDataType::ResolveOrThrow(), CDataTool::Run(), s_GetCountIdentityMismatch(), SetupSubjects_OMF(), DTDParser::SkipConditionalSection(), CEnumeratedTypeInfo::SkipEnum(), ASNParser::Value(), DTDParser::Value(), CEnumeratedTypeInfo::WriteEnum(), variation::CVariationUtil::CVariantPropertiesIndex::x_Add(), CVariationUtilities::x_GetAlleleFromLoc(), variation::CVariationUtil::x_GetLiteralAtLoc(), CSafeStatic< CTls< TValue >, CStaticTls_Callbacks< TValue > >::x_Init(), CSplign::x_LoadSequence(), and CNcbiApplication::x_TryMain().

#define NCBI_THROW (   exception_class,
  err_code,
  message 
)
Value:
do { \
USING_SCOPE(NCBI_NS_NCBI::ncbi_ex_manip); \
NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \
message)); \
} while (0)
#define NCBI_EXCEPTION(exception_class, err_code, message)
Generic macro to make an exception, given the exception class, error code and message string...
Definition: ncbiexpt.hpp:538
#define USING_SCOPE(ns)
Use the specified namespace.
Definition: ncbistl.hpp:76
#define NCBI_EXCEPTION_THROW(exception_var)
Throw an existing exception object.
Definition: ncbiexpt.hpp:530

Generic macro to throw an exception, given the exception class, error code and message string.

The err_code argument may include manipulators to set additional options, e.g. eMyErrCode | Console | Severity(eDiag_Info). In any case the error code value must be the first in the combination.

Definition at line 547 of file ncbiexpt.hpp.

Referenced by CObjectManager::AcquireDataLoader(), CDataSource_ScopeInfo::AcquireTSEUserLock(), CServer_Listener::Activate(), SAsyncData_rec_t::ActiveQuery(), CMaskInfoRegistry::Add(), CAlnMix::Add(), CAlnMixSequences::Add(), CAlnMixMatches::Add(), CUnsupportedEditSaver::Add(), CArgs::Add(), SCommon8Bytes::Add(), CSeqMaskerUsetArray::add_info(), CSeqMaskerUsetSimple::add_info(), CPrefetchManager::AddAction(), CPluginArgSet::AddArgument(), CScope_Impl::AddBioseq(), AddBioseqToTable(), AddCodeBreak(), CObjectList::AddColumn(), CWriteDB_Volume::AddColumnMetaData(), CWriteDB_Impl::AddColumnMetaData(), CCommandArgDescriptions::AddCommand(), CServer::AddConnectionToPool(), CBamUIDataSource::AddDataLoader(), CUIDataSourceService::AddDataSource(), CTime::AddDay(), CPluginArgSet::AddDefaultArgument(), CUnsupportedEditSaver::AddDesc(), CUnsupportedEditSaver::AddDescr(), CScope_Impl::AddDSBefore(), CHttpFormData::AddEntry(), CArgDescriptions::AddExtra(), CBuildDatabase::AddFasta(), CSeq_feat_EditHandle::AddFeatId(), CFeatTree::AddFeature(), CSeq_feat_EditHandle::AddFeatXref(), CGroupMapWidget::AddGroup(), CUnsupportedEditSaver::AddId(), CWriteDB_IsamIndex::AddIds(), AddInsertWithGaps(), CGroupMapWidget::AddItem(), CFlatFileGenerator::CCancelableFlatItemOStreamWrapper::AddItem(), CNSGroupsRegistry::AddJob(), CNSGroupsRegistry::AddJobs(), CLinks::AddLink(), CDelta_ext::AddLiteral(), CTime::AddMinute(), CTime::AddMonth(), CTime::AddNanoSecond(), CArgDescriptions::AddNegatedFlagAlias(), CSeqSearch::AddNucleotidePattern(), CPluginArgSet::AddOptionalArgument(), CProjectService::AddProjectView(), CHttpFormData::AddProvider(), CNcbiResourceInfoFile::AddResourceInfo(), CObjectList::AddRow(), CTime::AddSecond(), CScope_Impl::AddSeq_annot(), CScope_Impl::AddSeq_entry(), CWriteDB_Impl::AddSequence(), CBuildDatabase::AddSequences(), CScope_Impl::AddSharedBioseq(), CScope_Impl::AddSharedSeq_annot(), CScope_Impl::AddSharedSeq_entry(), AddSpanningSentinelFeat(), CScoreBuilderBase::AddSplignScores(), CBAMDataLoader_Impl::AddSrzDef(), CChecksum::AddStream(), CAppTaskService::AddTask(), CThreadPool_Impl::AddTask(), CViewManagerService::AddToWorkbench(), CTrackContainer::AddTracks(), CDataSource::AddTSE(), CEnumeratedTypeValues::AddValue(), CUrl::Adjust(), CFeatureGenerator::SImplementation::AdjustAlignment(), variation_ref::CVariationUtil::AdjustDelinsToInterval(), CBlastOptionsBuilder::AdjustProgram(), CSeqDBAtlas::Alloc(), CAlnGraphic::AlnGraphicDisplay(), SNetScheduleExecutorImpl::AppendAffinityTokens(), CArchive::AppendFileFromMemory(), CUpdateMultipleSeq_Input::AppendOld_UpdateSeqPairs(), COMSSASearch::AppendSearch(), CNcbiApplication::AppMain(), CChainerArgUtil::ArgsToChainer(), CPluginValue::AsBoolean(), CArg_String::AsBoolean(), CPluginArg::AsBoolean(), CArg_String::AsDateTime(), CNWFormatter::AsDenseSeg(), CArg_String::AsDirectory(), CSpliced_seg::AsDiscSeg(), CPluginValue::AsDouble(), CArg_String::AsDouble(), CPluginArg::AsDouble(), CPluginValue::AsInputFile(), CArg_String::AsInputFile(), CPluginArg::AsInputFile(), CTmpFile::AsInputFile(), CArg_String::AsInt8(), CPluginValue::AsInteger(), CArg_String::AsInteger(), CPluginArg::AsInteger(), CArg_String::AsIOFile(), CID1Client::Ask(), CMLAClient_Base::Ask(), CEntrez2Client_Base::Ask(), CRemapClient_Base::Ask(), CID1Client_Base::Ask(), CGridRPCBaseClient< CAsnBinCompressed >::Ask(), CGridRPCBaseClient< CAsnBinCompressed >::AskStream(), CPluginArg::AsList(), CPluginValue::AsObject(), CPluginArg::AsObject(), CPluginValue::AsOutputFile(), CArg_String::AsOutputFile(), CPluginArg::AsOutputFile(), CTmpFile::AsOutputFile(), CPluginValue::AsProject(), CPluginArg::AsProject(), CPluginValue::AsSecretString(), CPluginArg::AsSecretString(), CSplignFormatter::AsSeqAlignSet(), CProduct_pos::AsSeqPos(), CSerialObject::Assign(), COctetStringTypeInfo::Assign(), COldAsnTypeInfo::Assign(), CTimeSpan::AssignFromSmartString(), SNSCommandArguments::AssignValues(), CTimeSpan::AsSmartString(), CNcbiTable< TValue, TRow, TColumn >::AssociateColumn(), CNcbiTable< TValue, TRow, TColumn >::AssociateRow(), CPluginValue::AsString(), CPluginArg::AsString(), CTime::AsString(), CNWFormatter::AsText(), variation::CVariationUtil::AsVariation(), CUnsupportedEditSaver::Attach(), CDataSource::AttachAnnot(), CDataSource::AttachEntry(), BackAlignNog(), CMSAToolJob::BeforeRun(), CQueryImpl::BeginNewRS(), CVariant::BigDateTime(), CCassPrm::Bind(), CCassQuery::Bind(), BinOpsFunc(), BioTreeConvertContainer2Dynamic(), BioTreeConvertContainer2Tree(), Blast_GetSeqLocInfoVector(), BlastFormatter_PreFetchSequenceData(), BlastJSON_FormatReport(), BlastSetupPreliminarySearchEx(), BlastXML2_FormatReport(), BlastXML_FormatReport(), BOOST_AUTO_TEST_CASE(), CAlnMixSegments::Build(), CBuildSparseAlnJob::Build(), BuildAln(), WSDLParser::BuildDataTree(), CPhyTreeCalc::CalcBioTree(), CDiffList::CalculateOffsets(), CAlnVec::CalculateScore(), CalculateSeqBufferLength(), CAlignShadow::CAlignShadow(), CAlignSort::CAlignSort(), CAlnSpanVertModel::CAlnSpanVertModel(), CObjectManagerEngine::CancelJob(), CAppJobDispatcher::CancelJob(), HST::CHttpReply< CPendingOperation >::CancelPending(), CAppTaskService::CancelTask(), CThreadPool_Impl::CancelTask(), CVariation_ref::CanGetClinical_test(), CVariation_ref::CanGetPopulation_data(), CVariation_ref::CanGetPub(), CStlClassInfoUtil::CannotGetElementOfSet(), NWinHook::CApiHookMgr::CApiHookMgr(), CArg_DateTime::CArg_DateTime(), CArg_Integer::CArg_Integer(), CArgDesc::CArgDesc(), CArgDescMandatory::CArgDescMandatory(), CArgDescSynopsis::CArgDescSynopsis(), CArgValue::CArgValue(), CAsnCache::CAsnCache(), CAsnCacheStore::CAsnCacheStore(), CBamAlignIterator::CBamAlignIterator(), CBioseq_EditHandle::CBioseq_EditHandle(), CBioseq_set_EditHandle::CBioseq_set_EditHandle(), CBlastDB_SeqFormatter::CBlastDB_SeqFormatter(), CBlastDbDataLoader::CBlastDbDataLoader(), CBlastDbFormatter::CBlastDbFormatter(), CBlastFastaInputSource::CBlastFastaInputSource(), CBlastKmer::CBlastKmer(), CBlastRPSAuxInfo::CBlastRPSAuxInfo(), CBlastSeqVectorFromCSeq_data::CBlastSeqVectorFromCSeq_data(), CBZip2CompressionFile::CBZip2CompressionFile(), CCassQuery::CCassQuery(), CCddInputData::CCddInputData(), CCgiEntryReaderContext::CCgiEntryReaderContext(), CClientPseudoDataType::CClientPseudoDataType(), CCompartApp::CCompartment::CCompartment(), CCompressedFile::CCompressedFile(), CConditionVariable::CConditionVariable(), CCSraAlignIterator::CCSraAlignIterator(), CDBAPI_CacheIReader::CDBAPI_CacheIReader(), CDeadline::CDeadline(), CEffectiveSearchSpaceCalculator::CEffectiveSearchSpaceCalculator(), CEntropyCalculator::CEntropyCalculator(), CFileByteSourceReader::CFileByteSourceReader(), CFindITSParser::CFindITSParser(), CFIntron::CFIntron(), CFlatFileGenerator::CFlatFileGenerator(), CFStreamByteSource::CFStreamByteSource(), CGeneFileWriter::CGeneFileWriter(), CGeneInfoFileReader::CGeneInfoFileReader(), CGeneralScoreMatrix::CGeneralScoreMatrix(), CGlTexture::CGlTexture(), CQueue::ChangeAffinity(), CSeqMapSwitchPoint::ChangeSwitchPoint(), CSeqTable_sparse_index::ChangeTo(), CSeqTable_multi_data::ChangeTo(), CSeqTable_multi_data::ChangeToBit(), CSeqTable_multi_data::ChangeToBit_bvector(), CSeqTable_multi_data::ChangeToBytes(), CSeqTable_multi_data::ChangeToCommon_bytes(), CSeqTable_multi_data::ChangeToCommon_string(), variation_ref::CVariationUtil::ChangeToDelins(), variation::CVariationUtil::ChangeToDelins(), CSeqTable_multi_data::ChangeToInt_scaled(), CSeqTable_multi_data::ChangeToString(), CNetBlastJobDescriptor::Check(), CNSClientId::CheckAccess(), CheckAdjacentSpliceSites(), CBinRunner::CheckBinary(), CheckBlobSize(), CSeq_loc_Conversion::CheckDstInterval(), CSeq_loc_Conversion::CheckDstMix(), CSeq_loc_Conversion::CheckDstPoint(), TestUtil::CheckForBlastSeqSrcErrors(), CheckForEmptySequences(), CGlUtils::CheckGlError(), CSyncQueue_I< Type, Container, TNativeIterator, Traits >::CheckGuard(), NTweakExon::CheckIdAndStrand(), CGridJobBatchSubmitter::CheckIfBatchAlreadySubmitted(), SNetServerInPool::CheckIfThrottled(), CGridCommandLineInterfaceApp::CheckJobInputStream(), COMSSASearch::CheckLibraryNameAndSize(), CSyncQueue_I< Type, Container, TNativeIterator, Traits >::CheckMatched(), CSeqUtils::CheckMaxSearchSegments(), CGridCommandLineInterfaceApp::CheckNetStorageOptions(), CStd_seg::CheckNumRows(), CDense_diag::CheckNumRows(), CDense_seg::CheckNumRows(), CSeq_align::CheckNumRows(), CDense_seg::CheckNumSegs(), CSplicedAligner::CheckPreferences(), CGnomonEngine::CheckRange(), CReadDispatcher::CheckReaders(), CObject::CheckReferenceOverflow(), CheckSpliceSite(), CProSplignInterrupt::CheckUserInterrupt(), CSyncQueue_I< Type, Container, TNativeIterator, Traits >::CheckValid(), CheckWrittenFile(), CAlnMix::ChooseSeqId(), CHttpCookie::CHttpCookie(), ChunkSize(), CIgAnnotationInfo::CIgAnnotationInfo(), CImportStrategy::CImportStrategy(), CIndexedDb_New::CIndexedDb_New(), CIndexedDb_Old::CIndexedDb_Old(), CIndexSuperHeader< CIndexSuperHeader_Base::INDEX_FORMAT_VERSION_1 >::CIndexSuperHeader(), CWinMaskUtil::CInputBioseq_CI::CInputBioseq_CI(), CInterProcessLock::CInterProcessLock(), CClassTypeInfoBase::ClassesById(), CDiffList::CleanupAndMerge(), CSeq_feat_EditHandle::ClearFeatIds(), CSeq_feat_EditHandle::ClearFeatXrefs(), CObjectList::ClearRows(), CLocalDbAdapter::CLocalDbAdapter(), CProjectStorage::Clone(), CLookupSeqIds::CLookupSeqIds(), CLookupTaxIds::CLookupTaxIds(), CFileIO::Close(), CSplitDataMaker::CloseDataStream(), CArg_String::CloseFile(), CLZOCompressionFile::CLZOCompressionFile(), CMaskFastaReader::CMaskFastaReader(), CGridCommandLineInterfaceApp::Cmd_CommitJob(), CGridCommandLineInterfaceApp::Cmd_GetBlob(), CGridCommandLineInterfaceApp::Cmd_SubmitJob(), CGridCommandLineInterfaceApp::Cmd_Upload(), CMemoryFile_Base::CMemoryFile_Base(), CMemoryFileMap::CMemoryFileMap(), CMinHashFile::CMinHashFile(), CMsvcPrjGeneralContext::CMsvcPrjGeneralContext(), CNcbiApplication::CNcbiApplication(), CNcbiResourceInfo::CNcbiResourceInfo(), CNetCacheReader::CNetCacheReader(), CNSClient::CNSClient(), NDirectNetStorageImpl::CObj::CObj(), CObjectList::CObjectList(), CObjMgr_QueryFactory::CObjMgr_QueryFactory(), CSeq_entry_EditHandle::CollapseSet(), CPhyTreeFormatter::CollapseToViewPort(), IAlnMultiDataSource::CollectAlignStats(), CNcbiTable< TValue, TRow, TColumn >::Column(), CNcbiTable< TValue, TRow, TColumn >::ColumnIdx(), CAccVerCacheDB::Columns(), CScopeTransaction_Impl::Commit(), SLongestFirstCompare::compare_seq(), SShortestFirstCompare::compare_seq(), SIdCompare::compare_seq(), CSeqManip::Complement(), CScoreLookup::Complexity(), CAsnBinCompressed::CompMethodToString(), CSDB_ConnectionParam::ComposeUrl(), CId2Compressor::CompressChunk(), CId2Compressor::CompressHeader(), CCachedAssembly::Compression(), CSeqDBIdSet::Compute(), CClusterer::ComputeClusters(), CClusterer::ComputeClustersFromLinks(), TKmerMethods< TKmerCounts >::ComputeCounts(), TKmerMethods< TKmerCounts >::ComputeDistLinks(), TKmerMethods< TKmerCounts >::ComputeDistMatrix(), CSeqDBAliasNode::ComputeMasks(), CBlastOptionsBuilder::ComputeProgram(), CScoreBuilderBase::ComputeScore(), CQueueDataBase::Configure(), CCassConnection::Connect(), SNetServerImpl::ConnectImpl(), CHttpResponse::ContentStream(), CHttpRequest::ContentStream(), CSeqConvert_imp::Convert(), CSeq_loc_Conversion::Convert(), CSeq_loc_Conversion_Set::Convert(), CFeatureGenerator::ConvertLocToAnnot(), CFeatureGenerator::SImplementation::ConvertMixedAlignToAnnot(), NTweakExon::ConvertOverlapsToGaps(), ConvertSeqAlignToPairwiseAln(), CSeq_entry_EditHandle::ConvertSeqToSet(), CSeq_entry_EditHandle::ConvertSetToSeq(), ConvertSplicedToPairwiseAln(), CSyncQueue< Type, Container, Traits >::CopyTo(), CEutilsClient::Count(), CParse::CParse(), NWinHook::CPEi386::CPEi386(), CPerfLogGuard::CPerfLogGuard(), CPipe::CPipe(), CPrefetchBioseq::CPrefetchBioseq(), CPrefetchFeat_CI::CPrefetchFeat_CI(), CPrintTaxFields::CPrintTaxFields(), CPromote::CPromote(), CProteinAlignText::CProteinAlignText(), CPsiBlastInputData::CPsiBlastInputData(), CPubseq2Reader::CPubseq2Reader(), CPubseqReader::CPubseqReader(), CQueryFactoryInfo::CQueryFactoryInfo(), CPhyTreeFormatter::CQueryNodeChecker::CQueryNodeChecker(), CRandom::CRandom(), CReaderAllocatedConnection::CReaderAllocatedConnection(), CBlastOptionsFactory::Create(), CSubjectsSequenceCoverage::Create(), CSeqMaskerOstatFactory::create(), CSeqMaskerIstatFactory::create(), CObjectIStream::Create(), CNullBoolFunctions::Create(), CDirEntry::CreateAbsolutePath(), CBlastDBAliasApp::CreateAliasFile(), CreateAlignSetFromAnchoredAln(), CreateAnchoredAlnFromAln(), CCommandArgDescriptions::CreateArgs(), CBlastBioseqMaker::CreateBioseqFromId(), CSetupFactory::CreateBlastSeqSrc(), CProjBulderApp::CreateCheckList(), CWriteDB_Volume::CreateColumn(), CreateCompartmentAccessor(), CreateConfigurableFile(), CCountryConflict::CreateControls(), CLatLonTool::CreateControls(), CBulkRna::CreateControls(), CBulkGene::CreateControls(), CBulkCDS::CreateControls(), CCompareWithBiosample::CreateControls(), CUnculTaxTool::CreateControls(), CFarPointerSeq::CreateControls(), CBulkEditFeatDlg::CreateControls(), CEditSequence::CreateControls(), SrcEditDialog::CreateControls(), CStaticDataType::CreateDefault(), CUniSequenceDataType::CreateDefault(), CNullDataType::CreateDefault(), CreateDense_diagFromAnchoredAln(), CreateDensegFromAnchoredAln(), CreateDensegFromDendiag(), CAlignFormatUtil::CreateDensegFromDendiag(), CSeq_align::CreateDensegFromDisc(), CSeq_align::CreateDensegFromStdseg(), CBuildDatabase::CreateDirectories(), CQueueDataBase::CreateDynamicQueue(), CProjBulderApp::CreateFeaturesAndPackagesFiles(), CBlob_id::CreateFromString(), CGC_Assembly::CreateHierarchy(), CNetScheduleClientFactory::CreateInstance(), CPluginManager< SNetScheduleAPIImpl >::CreateInstance(), CBlastDbSet::CreateLocalDbAdapter(), CSeqIdListSet::CreateLocalDbAdapter(), CSplitSeqIdListSet::CreateLocalDbAdapter(), CSeqLocListSet::CreateLocalDbAdapter(), CSplitSeqLocListSet::CreateLocalDbAdapter(), CSetupFactory::CreateLookupTable(), CreateMsvcProjectMakefileName(), CCgiSession::CreateNewSession(), CProjectService::CreateNewWorkspace(), CBlobStorage_Null::CreateOStream(), CreatePackedsegFromAnchoredAln(), CAlignCleanup::CreatePairwiseFromMultiple(), CreateProjectName(), CDirEntry::CreateRelativePath(), CAlnMultiModel::CreateRows(), CSpliced_exon::CreateRowSeq_interval(), CDense_diag::CreateRowSeq_interval(), CDense_seg::CreateRowSeq_interval(), CStd_seg::CreateRowSeq_loc(), CSeq_align::CreateRowSeq_loc(), CCassBlobOp::CreateScheme(), CSetupFactory::CreateScoreBlock(), CSparseAln::CreateSegmentIterator(), CreateSeqAlignFromAnchoredAln(), CreateSeqAlignFromEachPairwiseAln(), CreateSeqAlignFromPairwiseAln(), CHgvsProtIrepReader::CreateSeqfeat(), CHgvsNaIrepReader::CreateSeqfeat(), CProtSeqlocHelper::CreateSeqloc(), CNaSeqlocHelper::CreateSeqloc(), CBlastOptions::CreateSnapshot(), CreateSplicedExonChunk(), CDeltaHelper::CreateSSR(), CFileIO::CreateTemporary(), CSeq_align::CreateTranslatedDensegFromNADenseg(), CDataType::CreateTypeInfo(), variation::CreateUnknownProtConsequenceVariation(), CEditObjectSet::CreateWindow(), CEditObjectFeaturePropagate::CreateWindow(), CEditObjectSeq_desc::CreateWindow(), CEditObjectSubmit_block::CreateWindow(), CEditObjectSeq_feat::CreateWindowImpl(), CRemoteBlast::CRemoteBlast(), CRemoteBlastDbAdapter::CRemoteBlastDbAdapter(), CRemoteBlastDbDataLoader::CRemoteBlastDbDataLoader(), CRpsAuxFile::CRpsAuxFile(), CRpsFreqRatiosFile::CRpsFreqRatiosFile(), CRpsFreqsFile::CRpsFreqsFile(), CRpsLookupTblFile::CRpsLookupTblFile(), CRpsObsrFile::CRpsObsrFile(), CRpsPssmFile::CRpsPssmFile(), CScorePValuesOptions::CScorePValuesOptions(), CSeq_annot_EditHandle::CSeq_annot_EditHandle(), CSeq_annot_ftable_CI::CSeq_annot_ftable_CI(), CSeq_annot_ftable_I::CSeq_annot_ftable_I(), CSeq_data::CSeq_data(), CSeq_entry_EditHandle::CSeq_entry_EditHandle(), CSeqDB::CSeqDB(), CSeqDBColumn::CSeqDBColumn(), CSeqDBExtFile::CSeqDBExtFile(), CSeqDBGiListSet::CSeqDBGiListSet(), CSeqDBIdxFile::CSeqDBIdxFile(), CSeqDBIsam::CSeqDBIsam(), CSeqDBLMDBEntry::CSeqDBLMDBEntry(), CSeqDBLMDBSet::CSeqDBLMDBSet(), CSeqDBVolSet::CSeqDBVolSet(), CSeqFormatter::CSeqFormatter(), CSeqidlistRead::CSeqidlistRead(), CSeqLoc2BlastSeqLoc(), CSeqMap::CSeqMap(), CSeqMap_CI::CSeqMap_CI(), CSeqMasker::CSeqMasker(), CSeqMaskerIstatAscii::CSeqMaskerIstatAscii(), CSeqMaskerIstatBin::CSeqMaskerIstatBin(), CSeqMaskerIstatOAscii::CSeqMaskerIstatOAscii(), CSeqMaskerIstatOBinary::CSeqMaskerIstatOBinary(), CSequenceIStreamFasta::CSequenceIStreamFasta(), CSequenceUpdater::CSequenceUpdater(), CSeqVecSeqInfoSrc::CSeqVecSeqInfoSrc(), CSettingsSet::CSettingsSet(), CSGSequenceDS::CSGSequenceDS(), CShortReadFastaInputSource::CShortReadFastaInputSource(), CPhyTreeFormatter::CSingleBlastNameExaminer::CSingleBlastNameExaminer(), CSplitQueryBlk::CSplitQueryBlk(), CSubstMatrix::CSubstMatrix(), CSymbolGuard::CSymbolGuard(), CSyncQueue< Type, Container, Traits >::CSyncQueue(), CSysLog::CSysLog(), CT_CompressBuffer(), CT_DecompressBuffer(), CTaxTreeDS_ObjMgr::CTaxTreeDS_ObjMgr(), CTime::CTime(), CTimeSpan::CTimeSpan(), CTmpFile::CTmpFile(), CTrans_table::CTrans_table(), CTransmissionWriter::CTransmissionWriter(), CUpdateSeq_Dlg::CUpdateSeq_Dlg(), CVariant::CVariant(), CVisRangeGlyph::CVisRangeGlyph(), CWinMaskConfig::CWinMaskConfig(), CWinMaskCountsConverter::CWinMaskCountsConverter(), CWriteDB_ConsolidateAliasFiles(), CProcess::Daemonize(), CSubSource::DateFromCollectionDate(), CTime::DayOfWeek(), CTime::DayOfWeekNameToNum(), CTime::DaysInMonth(), Decode(), CFeatureParams::DecoStrToValue(), CNcbiEncrypt::Decrypt(), CNcbiEncrypt::DecryptForDomain(), CTypeInfo::Delete(), CBDB_Volumes::Delete(), CProjectStorage::Delete(), CArgDescriptions::Delete(), CQueueDataBase::DeleteDynamicQueue(), CJobGCRegistry::DeleteIfTimedOut(), CAppJobDispatcher::DeleteJob(), IBlobStorage::DeleteStorage(), Deserialize(), CSegmentSmearGlyph::CSegMap::Deserialize(), CBDB_BvSplitDictStore< Key, Dictionary, BvStore, BV >::Deserialize(), CUnsupportedEditSaver::Detach(), CDiffText::Diff(), CTime::DiffTimeSpan(), CSeqMaskerIstatFactory::DiscoverStatType(), CDisplaySeqalign::DisplaySeqalign(), CNCBINode::DoAppendChild(), CSeq_data::DoConstruct(), CObject::DoDeleteThisObject(), CSeqMaskerOstatOpt::doFinalize(), CLockVectorGuard< TLockVect >::DoLock(), CObject::DoNotDeleteThisObject(), HST::CHttpReply< CPendingOperation >::DoSend(), CSeqMaskerOstatAscii::doSetUnitCount(), CProjBulderApp::DumpFiles(), CSQLITE_Global::EnableSharedCache(), Encode(), CNcbiEncrypt::Encrypt(), CNcbiEncrypt::EncryptForDomain(), CNcbiTestTreeElement::EnsureDep(), CProjBulderApp::EnumOpt(), CEnumParser< TEnum, TParam >::EnumToString(), CSerialObject::Equals(), CTreeLevelIterator::Erase(), CObjectInfoMI::Erase(), CInputModel::Error(), CHttpResponse::ErrorStream(), CTreeQueryExec::EvalNext(), CQueryFuncAssignment::Evaluate(), CQueryFuncPromoteAndOr::Evaluate(), CQueryFuncPromoteLogic::Evaluate(), CMQueryFunctionAssignment::Evaluate(), CSGQueryFunctionLogic::Evaluate(), CQueryFunction_BV_In_Or< BV >::Evaluate(), CSGQueryFunctionCompare::Evaluate(), CQueryFuncPromoteEq::Evaluate(), CQueryFuncPromoteIn::Evaluate(), CQueryFuncLike::Evaluate(), CQueryFuncPromoteGtLt::Evaluate(), CQueryFuncPromoteBetween::Evaluate(), CBinRunner::Exec(), NAutomation::SNetCacheBlob::ExecRead(), CGffObjectLoader::Execute(), TSL::CTcpWorker< HST::CHttpProto< P >, HST::CHttpConnection< P >, HST::CHttpDaemon< P > >::Execute(), CCassQuery::Execute(), CPipe::ExecWait(), NAutomation::SNetCacheBlob::ExecWrite(), CSeq_align::ExonLengthRange(), CPhyTreeFormatter::ExpandCollapseSubtree(), CwxTableListCtrl::ExportTableControlToCSV(), CMemoryFile::Extend(), CFileModules::ExternalResolve(), CDataTypeModule::ExternalResolve(), CFilteringArgs::ExtractAlgorithmOptions(), CFrameShiftArgs::ExtractAlgorithmOptions(), CPsiBlastArgs::ExtractAlgorithmOptions(), CPhiBlastArgs::ExtractAlgorithmOptions(), CMappingArgs::ExtractAlgorithmOptions(), CMapperQueryOptionsArgs::ExtractAlgorithmOptions(), CBlastDatabaseArgs::ExtractAlgorithmOptions(), CIgBlastArgs::ExtractAlgorithmOptions(), CFormattingArgs::ExtractAlgorithmOptions(), CMapperFormattingArgs::ExtractAlgorithmOptions(), CMbIndexArgs::ExtractAlgorithmOptions(), ExtractBlast4Request(), ExtractCommonFields(), CArchive::ExtractFileToHeap(), CArchive::ExtractFileToMemory(), CDense_seg::ExtractRows(), CBlastDBExtractor::ExtractSeqData(), CSubjectMap_Factory_Base::extractSeqVector(), ExtractSeqVector(), CDense_seg::ExtractSlice(), CQueue::FailJob(), CTMS_DisplayTrack_Client::FetchRawStream(), CBDB_Volumes::FetchVolumeRec(), CDiagFilter::Fill(), CIStreamBuffer::FillBuffer(), CDense_seg::FillUnaligned(), CSeqMaskerOstat::finalize(), CArchiveMemory::Finalize(), CGC_Assembly::Find(), CSrzPath::FindAccPath(), CGenomicCollectionsService::FindAssembliesBySequences(), CClusterer::CSingleCluster::FindCenterElement(), CComment_set::FindCommentRule(), CProSplign::FindGlobalAlignment(), COMSSASearch::FindMinMaxSearchSettingId(), COMSSASearch::FindMinMaxSpectrumNumber(), CEnumeratedTypeValues::FindName(), CSeq_id_General_Tree::FindOrCreate(), CSeq_id_Patent_Tree::FindOrCreate(), CNcbiApplication::FindProgramExecutablePath(), COrf::FindStrongKozakUOrfs(), CEnumeratedTypeValues::FindValue(), variation::CVariationUtil::FlipStrand(), CImageUtil::FlipX(), COStreamBuffer::Flush(), CFileIO::Flush(), COStreamBuffer::FlushBuffer(), CThreadPool_Impl::FlushThreads(), CProcess::Fork(), CVecscreenRun::CFormatter::FormatResults(), CHttpRequest::FormData(), FrBackAlign(), CNWFormatter::SSegment::FromBuffer(), CSplign::SAlignedCompartment::FromBuffer(), CRgbaColor::FromString(), CDense_seg::FromTranscript(), g_CreateSpecialSeqfeat(), g_Diag_Use_RWLock(), g_GetPasswordFromConsole(), g_GZip_ScanForChunks(), g_ThrowOnNull(), g_ValidateVariationSeqfeat(), CSeq_align::GapLengthRange(), CFlatFileGenerator::Generate(), CClientPseudoTypeStrings::GenerateClassCode(), CClassTypeStrings::GenerateClassCode(), CChoiceDataType::GenerateCode(), CAliasTypeStrings::GenerateCode(), CProjBulderApp::GenerateUnixProjects(), CSimpleClipboard::Get(), CAlignmentCollectionScore::Get(), CScore_GapCount::Get(), CScore_FrameShifts::Get(), CCache< TKey, TValue, THandler, TLock, TSize >::Get(), CScore_Polya::Get(), CScore_InternalUnaligned::Get(), CScore_SequenceLength::Get(), CScore_SymmetricOverlap::Get(), CScore_ExonCount::Get(), CScore_IndelToSplice::Get(), CScore_StartStopCodon::Get(), CSDB_ConnectionParam::Get(), CScore_CdsScore::Get(), CScore_LastSpliceSite::Get(), CScore_TblastnScore::Get(), CScore_EdgeExonInfo::Get(), CScore_GeneID::Get(), CTimeout::Get(), CSeqMaskerUsetHash::get_info(), GetAccessionForGi(), GetAccessionForId(), CIdResolver::GetAccessionVersion(), CBioseq_Handle::GetAccessSeq_id_Handle(), CNetICacheClient::GetAccessTime(), CDataLoader::GetAccVer(), CScope_Impl::GetAccVer(), CScope_Impl::GetAccVers(), CScope::GetAccVers(), CSeqDB_IdRemapper::GetAlgoId(), CSeqDBGiMask::GetAlgorithmId(), CCSraRefSeqIterator::GetAlignCountAtPos(), CSeq_align::GetAlignedBases(), CAlnStats< _TAlnIdVec >::GetAlignedIds(), CAlignmentAssistant::GetAlignment(), GetAlignmentFromStream(), CCmdLineBlastXML2ReportData::GetAlignmentSet(), CFileManifest::GetAllFilePaths(), CBlastInput::GetAllSeqs(), GetAllSwitchPoints(), CSparseAln::GetAlnSeqString(), CSeqDBImpl::GetAmbigSeq(), CSeqDB::GetAmbigSeqAlloc(), CDataType::GetAndVerifyVar(), CSeq_entry::GetAnnot(), CVDBGraphSeqIterator::GetAnnot(), CNetStorageGCDatabase::GetAppLock(), CNcbiApplication::GetArgs(), CUrl::GetArgs(), CTimeout::GetAsDouble(), CTimeout::GetAsMilliSeconds(), CAssemblyInfo::GetAssms_Gi(), CAssemblyInfo::GetAssms_TaxId(), CAssemblyInfo::GetAssms_Term(), CTimeout::GetAsTimeSpan(), CClipboard::GetAt(), NDirectNetStorageImpl::CObj::GetAttribute(), CCgiSession_NetCache::GetAttribute(), NDirectNetStorageImpl::CObj::GetAttributeList(), CCgiSession_NetCache::GetAttrIStream(), CPub::GetAuthors(), GetBase(), GetBestCdsForMrna(), GetBestGeneForCds(), GetBestGeneForFeat(), GetBestGeneForMrna(), GetBestMrnaForCds(), GetBestParentForFeat(), CBiosampleChkApp::GetBiosampleDescriptors(), CSeqDBVol::GetBioseq(), CSeqDBImpl::GetBioseq(), GetBioseq(), GetBioseq_set(), CScope::GetBioseq_setEditHandle(), GetBioseqDiffs(), CScope::GetBioseqEditHandle(), CAlnVec::GetBioseqHandle(), CSparseAln::GetBioseqHandle(), CScope_Impl::GetBioseqHandle(), CStdPrefetch::GetBioseqHandle(), CObjMgrFree_RemoteQueryData::GetBioseqSet(), CAlignFormatUtil::GetBlastDbInfo(), CScoreBuilder::GetBlastEValue(), CScoreBuilder::GetBlastScore(), CScoreBuilder::GetBlastScoreDenseg(), CScoreBuilder::GetBlastScoreSpliced(), CBlastQuerySourceBioseqSet::GetBlastSequence(), CDataLoader::GetBlobById(), CVariant::GetBlobDescriptor(), CDataLoader::GetBlobIdFromString(), CCassBlobLoader::GetBlobSize(), CCassBlobLoader::GetBlobStat(), CId1Reader::GetBlobVersion(), CBondList::GetBondType(), CQueryParseNode::GetBool(), CConfig::GetBool(), CSeqTable_multi_data::GetBytesPtr(), CInternalStopFinder::GetCDSNucleotideSequence(), GetCdssForGene(), CHTML_table_Cache::GetCellNode(), GetCharsetEncodingForm(), CTSE_Split_Info::GetChunk(), CDataLoader::GetChunk(), CClassTypeInfoBase::GetClassInfoById(), CVariation_ref::GetClinical_test(), CClusterer::GetClusterDistMatrix(), CClusterer::GetClusterId(), CSeqUtil::GetCodingType(), CGlVboNode::GetColorBuffer(), CGlVboNode::GetColorBufferUC(), CPhyloTreeScheme::GetColorIdx(), CSeq_table::GetColumn(), CCassQuery::GetColumn(), CSeqDBImpl::GetColumnMetaData(), CCassBlobOp::GetConn(), CCgiRequest::GetContent(), CObjectCoords::GetCoordinates(), GetCoverage(), CPhyloTree::GetCurrentNode(), CTime::GetCurrentTimeT(), CAlnSpanVertModel::GetData(), CAlnTableDS::GetData(), CSeqMap_CI::GetData(), CBlastServices::GetDatabaseInfo(), CConfig::GetDataSize(), CNetStorageGCDatabase::GetDBStructureVersion(), CSeqDBLMDB::GetDBTaxIds(), CSeqDBImpl::GetDBTaxIds(), CSplicedAligner32::GetDefaultWi(), CSplicedAligner16::GetDefaultWi(), GetDeleteSequenceCommand(), CIntDeltaSumCache::GetDeltaSum4(), CAlnMixMerger::GetDenseg(), CGC_Assembly::GetDesc(), CSeq_entry::GetDescr(), CFtpUtils::GetDirContent(), CClusterer::GetDistMatrix(), GetDNASequence(), CQueryParseNode::GetDouble(), CConfig::GetDouble(), CSGDataSourceContext::GetDS(), CSeq_align_Mapper_Base::GetDstAlign(), CProt_ref::GetECNumberReplacement(), CDiffList::GetEditDistance(), CCmdLineBlastXML2ReportData::GetEffectiveSearchSpace(), CSeq_loc_CI::GetEmbeddingSeq_loc(), CDir::GetEntriesPtr(), CCmdLineBlastXML2ReportData::GetEntropy(), CArchiveZip::GetEntryInfo(), CTypeStrings::GetEnumName(), CExec::CResult::GetExitCode(), CProSplign::CImplementation::GetExons(), CCgiCookie::GetExpDate(), CDeadline::GetExpirationTime(), CDocsumTableModel::GetExtraColumnName(), CObjectListSelTM::GetExtraColumnName(), CNetBlastJobTableModel::GetExtraColumnName(), CDocsumTableModel::GetExtraValueAt(), CObjectListSelTM::GetExtraValueAt(), CNetBlastJobTableModel::GetExtraValueAt(), CObjectListTableModel::GetExtraValueAt(), CPluginManager< TClass >::GetFactory(), CStdPrefetch::GetFeat_CI(), CUser_object::GetField(), CUser_field::GetField(), GetFileNameFromExistingLMDBFile(), CFileIO::GetFilePos(), CFileIO::GetFileSize(), CProSplign::CImplementation::GetFlanks(), CPdfFontHandler::GetFontName(), GetFormat(), CFormatGuess::GetFormatName(), CReferenceDataType::GetFullCType(), CDataType::GetFullCType(), CCassQuery::GetFuture(), CWGSDb_Impl::SSeqTableCursor::GetGapInfo(), CGeneInfoFileReader::GetGeneInfoForGi(), CGeneInfoFileReader::GetGeneInfoForId(), CGnomonEngine::GetGenes(), CBLASTParams::GetGeneticCodeByLabel(), CBLASTParams::GetGeneticCodeLabel(), CBioseq_set::GetGenomicFromGenProdSet(), CDataLoader::GetGi(), CScope_Impl::GetGi(), CSeqDBImpl::GetGiBounds(), GetGiForAccession(), GetGiForId(), CSeq_id_Which_Tree::GetGiHandle(), CScope_Impl::GetGis(), CScope::GetGis(), CBlockingQueue< TRequest >::GetHandle(), CCassConnectionFactory::GetHostPort(), CIdHandler::GetId(), CSeqVecSeqInfoSrc::GetId(), CCgiSession::GetId(), CAlignShadow::GetId(), GetId(), CObject_id::GetId8(), CQueryParseNode::GetIdent(), CSeqidlistRead::GetIds(), CScope_Impl::GetIds(), GetIndexSuperHeader(), CVDBGraphSeqIterator::GetInfo(), CCSraRefSeqIterator::GetInfo(), CSNPDbTrackIterator::GetInfo(), CSNPDbSeqIterator::GetInfo(), CSeqMapSwitchPoint::GetInsert(), CConfig::GetInt(), CQueryParseNode::GetInt(), CPrimitiveTypeInfo::GetIntegerTypeInfo(), CIntronOffsetHelper::GetIntronOffset(), CTypeStrings::GetIsSetCode(), CBlobStorage_Null::GetIStream(), CProjectStorage::GetIstream(), CItemsInfo::GetItemsByName(), CItemsInfo::GetItemsByOffset(), CItemsInfo::GetItemsByTagInfo(), SGridWorkerNodeImpl::GetJobProcessor(), CNSGroupsRegistry::GetJobs(), CAsnBinCompressed::GetJobStreamProperties(), CCmdLineBlastXML2ReportData::GetKappa(), SJsonArrayIterator::GetKey(), CScope_Impl::GetLabel(), CScope_Impl::GetLabels(), CScope::GetLabels(), CCmdLineBlastXML2ReportData::GetLambda(), CBDB_SplitCursor< BDB_SplitStore, BDB_Vol >::GetLastBlobId(), CNWAligner::GetLeftSeg(), CSeqVecSeqInfoSrc::GetLength(), GetLength(), CGC_Sequence::GetLength(), CBlastQuerySourceOM::GetLength(), CBlobSplitterImpl::GetLength(), CBlastQuerySourceBioseqSet::GetLength(), CBamRefSeqIterator::GetLength(), CDefaultLengthGetter::GetLength(), CCmdLineBlastXML2ReportData::GetLengthAdjustment(), CJobGCRegistry::GetLifetime(), CSeq_entry_Info::GetLoadedAnnot(), CMatchSetup::GetLocalSeqId(), CTime::GetLocalTime(), CDiffList::GetLongestCommonSubstring(), CNWAligner::GetLongestSeg(), CThreadPool_Controller::GetMainPoolMutex(), CFeatTree::GetMappedFeat(), CSeqDBImpl::GetMaskAlgorithmDetails(), CSeqDBImpl::GetMaskData(), CSeqVecSeqInfoSrc::GetMasks(), CBioseq_set::GetMasterFromSegSet(), CSeq_id_Mapper::GetMatchingHandlesStr(), CTraceData::GetMax(), CAlignShadow::GetMax(), CSGTraceData::GetMax(), CMedia::GetMedia(), CProjBulderApp::GetMetaMakefile(), CAlignShadow::GetMin(), GetMrnasForGene(), CTimeout::GetNano(), CDirEntry::GetNearestExistingParentDir(), CSeqDBIdSet::GetNegativeList(), GetNetBlastJobDescription(), CSplitCDSwithTooManyXs::GetNewProtId(), CSplitCDSwithTooManyXs::GetNewProtIdFromExistingProt(), CFastaBioseqSource::GetNext(), CMaskFastaReader::GetNextSequence(), CShortReadFastaInputSource::GetNextSequence(), CVariant::GetNonNullData(), CGlVboNode::GetNormalBuffer(), CBioseq_set::GetNucFromNucProtSet(), GetNumberOfContexts(), CPluginValue::GetObject(), CProjectStorage::GetObject(), CSeqDBLMDB::GetOid(), CSeqDBVol::GetOidAtOffset(), CSeqDBImpl::GetOidAtOffset(), CSeqDBLMDB::GetOids(), CSeqDBLMDB::GetOidsForTaxIds(), GetOrg_ref(), CBlobStreamHelper::GetOStream(), CSeq_id_Info::GetPackedSeqId(), CQueryImpl::GetParameter(), CTreeModel< TNode >::GetParent(), HST::CHttpReply< CPendingOperation >::GetPendingRec(), CSeqDBImpl::GetPigBounds(), CSraRef< VFSManager >::GetPointer(), CBamRef< VFSManager >::GetPointer(), CVariation_ref::GetPopulation_data(), CSeqDBIdSet::GetPositiveList(), CExec::CResult::GetProcessHandle(), CProductStringBuilder::GetProductString(), CPluginValue::GetProject(), CVariantProperties::GetProject_data(), CCgiRequest::GetPropertyName(), GetProteinName(), GetProteinWeight(), GetProteinWeights(), CDeltaBlast::GetPssm(), CChoicePointerTypeInfo::GetPtrIndex(), CWeakObject::GetPtrProxy(), CVariation_ref::GetPub(), CObjMgrFree_LocalQueryData::GetQueryInfo(), CNetScheduleHandler::GetQueue(), CRandomSupplier::GetRand(), CSeqDBVol::GetRawSeqAndAmbig(), CSeqDBImpl::GetRawSeqAndAmbig(), NAutomation::SNetCacheService::GetReader(), CDBAPI_Cache::GetReadStream(), CSQLITE3_Cache::GetReadStream(), CGBDataLoader::GetRealBlobId(), CDataLoader::GetRecords(), CBamIndex::GetRef(), CSeqMap_CI::GetRefData(), CSeqMap_CI::GetRefGapLiteral(), CUser_object::GetRefGeneTrackingStatus(), CSeqMap_CI_SegmentInfo::GetRefPosition(), CSeqMap_CI::GetRefSeqid(), CReadObjectList::GetRegisteredObject(), CDeadline::GetRemainingTime(), CNetBlastJobDescriptor::GetRemoteBlast(), CAlnMap::GetResidueIndexMap(), CGuiHttpSessionRequest::GetResponseStream(), CScorePValuesCalc::GetResult(), CMultiAligner::GetResults(), CSearchResultSet::GetResults(), GetReverseComplement(), CNWAligner::GetRightSeg(), CNcbiTable< TValue, TRow, TColumn >::GetRow(), CQueryImpl::GetRowCount(), CSeq_align_Mapper_Base::GetRowId(), CSpliced_exon::GetRowSeq_range(), CDataSource_ScopeInfo::GetScopeImpl(), CScoreLookup::GetScore(), CGeneralScoreMatrix::GetScore(), CCodingPropensity::GetScore(), CNWAligner::GetScore(), CRemoteBlast::GetSearchStrategy(), CGlVboNode::GetSecondaryColorBuffer(), CRandom::GetSeed(), CBlastQuerySourceOM::GetSegmentInfo(), CPaintAlignment::GetSegments(), GetSentinelByte(), CScope::GetSeq_annotEditHandle(), GetSeq_entry(), CScope::GetSeq_entryEditHandle(), CScope_Impl::GetSeq_entryHandle(), CScope_Impl::GetSeq_featHandle(), CSparse_seg::GetSeq_id(), CDense_seg::GetSeq_id(), CSeq_align::GetSeq_id(), CWGSScaffoldIterator::GetSeq_inst(), CAlnMixMerger::GetSeqAlign(), CSeqDBVol::GetSeqData(), CSeqDBImpl::GetSeqData(), CDbIndex::GetSeqData(), CFlatFileGenerator::GetSeqFeatText(), CSeqDBImpl::GetSeqIDs(), CDbIndex::GetSeqLen(), CSeqDBImpl::GetSeqLengthApprox(), CSeqVecSeqInfoSrc::GetSeqLoc(), GetSeqLocFromStream(), CObjMgrFree_RemoteQueryData::GetSeqLocs(), CStd_seg::GetSeqRange(), CSparse_seg::GetSeqRange(), CSpliced_seg::GetSeqRange(), CSeq_align::GetSeqRange(), CStd_seg::GetSeqStart(), CDense_diag::GetSeqStart(), CSparse_seg::GetSeqStart(), CDense_seg::GetSeqStart(), CSeq_align::GetSeqStart(), CStd_seg::GetSeqStop(), CSparse_seg::GetSeqStop(), CDense_seg::GetSeqStop(), CSeq_align::GetSeqStop(), CDense_diag::GetSeqStrand(), CSpliced_seg::GetSeqStrand(), CSparse_seg::GetSeqStrand(), CDense_seg::GetSeqStrand(), CSeq_align::GetSeqStrand(), CAlnWriter::GetSeqString(), CAlnMixSeq::GetSeqString(), CEditSequence::GetSequence(), CSeqDBImpl::GetSequence(), CSeqMap_I::GetSequence(), GetSequence_OMF(), CObjMgrFree_LocalQueryData::GetSequenceBlk(), CDataLoader::GetSequenceHash(), CScope_Impl::GetSequenceHash(), CScope_Impl::GetSequenceHashes(), CScope::GetSequenceHashes(), CScope_Impl::GetSequenceLength(), CScope_Impl::GetSequenceLengths(), CScope::GetSequenceLengths(), GetSequenceNucleotideBothStrands(), CBlastServices::GetSequenceParts(), GetSequenceProtein(), GetSequenceSingleNucleotideStrand(), CScope_Impl::GetSequenceState(), CScope_Impl::GetSequenceStates(), CScope::GetSequenceStates(), CDataLoader::GetSequenceType(), CScope_Impl::GetSequenceType(), CSeqDB::GetSequenceType(), CScope_Impl::GetSequenceTypes(), CScope::GetSequenceTypes(), CPhyTreeCalc::GetSerialTree(), CCgiRequest::GetSession(), CClusterer::GetSingleCluster(), CFileManifest::GetSingleFilePath(), CSeq_entry_Handle::GetSingleSubEntry(), CSiteList::GetSiteType(), CJsonNode::GetSize(), CObjectIStream::GetSource(), CBDB_SplitCursor< BDB_SplitStore, BDB_Vol >::GetSourceVolume(), CCompartApp::CCompartment::GetSpan(), CAlignShadow::GetStart(), CQueryImpl::GetStatus(), CQueue::GetStatusAndLifetime(), CQueue::GetStatusAndLifetimeAndTouch(), CJob::GetStatusBeforeReading(), CAlignShadow::GetStop(), CCompartApp::CCompartment::GetStrand(), CAlignShadow::GetStrand(), CCompartmentFinder< THit >::CCompartment::GetStrand(), CBamAlignIterator::GetStrand(), CInputStreamSource::GetStream(), CSeqDBImpl::GetStringBounds(), CArgValue::GetStringList(), CSeqTable_multi_data::GetStringPtr(), CQueryParseNode::GetStrValue(), CImage::GetSubImage(), CUnculturedTool::GetSuggestedCorrection(), GetSwitchPoint(), CGC_Sequence::GetSynonymSeq_id(), CItemsInfo::GetTagAndClass(), CScope_Impl::GetTaxId(), CScope_Impl::GetTaxIds(), CScope::GetTaxIds(), CBlastServices::GetTaxIdWithWindowMaskerSupport(), CSeqDBImpl::GetTaxInfo(), CNcbiTestApplication::GetTestUnit(), CGlVboNode::GetTexCoordBuffer(), CGlVboNode::GetTexCoordBuffer1D(), CQuery::GetTheOnlyRow(), CNetICacheClient::GetTimeout(), CNetICacheClient::GetTimeStampPolicy(), CTime::GetTimeT(), CTitle::GetTitle(), CPub::GetTitles(), CNWAligner::GetTranscriptString(), CGen_code_table_imp::GetTransTable(), CClusterer::GetTree(), CMultiAligner::GetTreeContainer(), CCassQuery::GetTupleIterator(), CCassQuery::GetTupleIteratorValue(), CResolvedTypeSet::GetType(), CArgDescriptions::GetTypeName(), CBuildType::GetTypeStr(), CCompressionUtil::GetUI2(), CCompressionUtil::GetUI4(), CTime::GetUniversalTime(), CUrlArgs::GetValue(), CAlnTableDS::GetValueAt(), CAlnSpanVertModel::GetValueAt(), COctetStringTypeInfo::GetValueOctetString(), CTraceData::GetValues(), CSGTraceData::GetValues(), CNetICacheClient::GetVersionRetention(), CGlVboNode::GetVertexBuffer2D(), CGlVboNode::GetVertexBuffer3D(), CSeqDBLMDB::GetVolumesInfo(), CSplicedAligner::GetWi(), CCleanupApp::HandleSeqEntry(), CAsn2FlatApp::HandleSeqEntry(), CAsn2FlatApp::HandleSeqId(), CSeqDBVol::HashToOids(), CPostProcessUtils::HasIntronOffset(), CMsvc7RegSettings::IdentifyPlatform(), CSeqDBIsam::IdsToOids(), CSeqDBVol::IdsToOids(), CFileCode::Include(), IndexABioseq(), CSeqScores::Init(), CGlLight::Init(), CNSeq::Init(), CSparseMultiDataSource::Init(), CNetBlastJobDescriptor::Init(), CAlnGraphic::Init(), SNetCacheAPIImpl::Init(), CImage::Init(), SNetICacheClientImpl::Init(), CLorentz::Init(), CPhyloTreeDataSource::Init(), CElementaryMatching::CBoolVector::Init(), CSeqDBFileMemMap::Init(), SNetScheduleAPIImpl::InitAffinities(), CAlignCollapser::InitContig(), CAlnMixSequences::InitExtraRowsStartIts(), CInputStreamSource::InitFile(), CInputStreamSource::InitFilesInDirSubtree(), CProjectsLstFileFilter::InitFromFile(), CMsvcConfigure::InitializeFrom(), CSetupFactory::InitializeMegablastDbIndex(), InitializeRemoteBlast(), CInputStreamSource::InitManifest(), CAlnMixSequences::InitRowsStartIts(), CSequenceOfTypeInfo::InitSequenceOfTypeInfo(), CInputStreamSource::InitStream(), CTextPanel::InitWidget(), CAlnContainer::insert(), CRangeMap< Mapped, Position >::insert(), CRangeMultimap< SWGSAccession, TIntId >::insert(), CSeqMapSwitchPoint::InsertInPlace(), CWriteDB_LMDB::InsertVolumesInfo(), CGlResMgr::Instance(), CSeqDBGiList::InsureOrder(), CSeq_align::IntronLengthRange(), CProjBulderApp::IsAllowedProjectTag(), CTMS_SupportedAssemblies_Client::IsAssemblySupported(), CTime::IsDST(), CGroupMapWidget::IsExpanded(), CBlastQuerySourceOM::IsFirstOfAPair(), CLinks::IsLink(), CDirEntry::IsNewer(), CNetICacheClient::IsOpen(), CBlastBioseqMaker::IsProtein(), CVariationUtilities::IsReferenceCorrect(), CVariation_ref::IsSetClinical_test(), CVariation_ref::IsSetPopulation_data(), CVariation_ref::IsSetPub(), CGC_Assembly::IsTargetSetReference(), CSeqMap_CI::IsUnknownLength(), grid::netschedule::limits::SQueueName::IsValidValue(), CTimeout::IsZero(), CNetService::Iterate(), CJsonNode::Iterate(), CNetService::IterateByWeight(), CSegmentMapTrack::LabelPosStrToValue(), CAlignmentTrack::LabelPosStrToValue(), CFeatureTrack::LayoutStrToValue(), CSegmentMapTrack::LevelStrToValue(), AbstractLexer::LexerError(), CFeatureTrack::LinkedFeatDisplayStrToValue(), CSplitParser::Load(), CGlTexture::Load(), CCgiSession::Load(), CDbIndex::Load(), CNcbiApplication::LoadConfig(), CDataTool::LoadDefinitions(), CSimpleMakeFileContents::LoadFrom(), CAsnObjectLoader::LoadFromStream(), CDbIndex::LoadIndex(), LoadIndexedOctetStringsFrom(), LoadIndexedStringsFrom(), CCassBlobOp::LoadKeys(), CFileCode::LoadLines(), CSeqMap::LoadSeq_data(), CCacheReader::LoadSeq_idGi(), CAlnMrgApp::LoadSeqEntry(), CwxTableListCtrl::LoadTableSettings(), CInterProcessLock::Lock(), CFileLock::Lock(), CBDB_Volumes::LockVolume(), CUser_object::CRefGeneTrackingAccession::MakeAccessionFromUserField(), MakeId(), CSeq_loc_CI_Impl::MakeLoc(), CSeq_loc_CI_Impl::MakeLocOther(), CNWAligner::MakePattern(), CNWFormatter::MakeSegments(), CAliToSeq_align::MakeSeq_align(), CIdMapperGCAssembly::Map(), CSeq_loc_Mapper_Base::Map(), CMemoryFileMap::Map(), MapSeq_feat(), CAlnMixMerger::Merge(), CTreeAlignMerger::Merge_Dist(), CBlastTabular::Modify(), CAlignShadow::Modify(), CCgiSession::ModifyId(), CCgiSession_NetCache::ModifySessionId(), CTime::MonthNameToNum(), CTime::MonthNumToName(), CEnumeratedTypeValues::NameToValue(), ncbi_q_parse(), NcbiStreamCopyThrow(), COpenViewManager::NeedParamsPanel(), CSeqDBLMDBSet::NegativeTaxIdsToOids(), CGridCommandLineInterfaceApp::NetSchedule_SuspendResume(), CFlatGatherer::New(), CFlatItemFormatter::New(), CCassQuery::NewBatch(), CCassConnection::NewQuery(), CDelta_ext_PackTarget::NewSegment(), CIStreamIteratorThread_Base< TRoot, TObject >::Next(), CCassQuery::NextRow(), CVariationNormalization::NormalizeVariation(), NotNull(), NS_ValidateServerSection(), NSTValidateServerSection(), CCleanupApp::ObtainSeqEntryFromBioseq(), CCleanupApp::ObtainSeqEntryFromBioseqSet(), CAsn2FastaApp::ObtainSeqEntryFromSeqEntry(), CAsn2FlatApp::ObtainSeqEntryFromSeqEntry(), CStd_seg::OffsetRow(), CDense_diag::OffsetRow(), CDense_seg::OffsetRow(), CSeq_align::OffsetRow(), CSeqDBImpl::OidToGi(), CSeqDBImpl::OidToPig(), CCompareWithBiosample::OnClickOk(), CUpdateSeqAlignWidget::OnDSChanged(), CAppJobDispatcher::OnEngineJobStateChanged(), CNetScheduleServerListener::OnErrorImpl(), CRowReaderStream_IANA_TSV::OnEvent(), CPhyloTreeWidget::OnExportSelection(), CGridWidget::OnExportToCSV(), HST::CHttpProto< CPendingOperation >::OnHttpRequest(), CMacroEditor::OnOkClick(), CwxPhyloEditDlg::OnOkClick(), CAccVerCacheDB::Open(), CDBAPI_Cache::Open(), CBDB_Volumes::Open(), CSQLITE3_Cache::Open(), CObjectOStream::Open(), CFileIO::Open(), open_ofstream(), CSeqIdChunkFile::OpenForRead(), CChunkFile::OpenForRead(), CSeqIdChunkFile::OpenForWrite(), CChunkFile::OpenForWrite(), CQueueDataBase::OpenQueue(), CPipe::OpenSelf(), CExec::CResult::operator intptr_t(), CHitComparator< THit >::operator()(), CSeqIdBioseqHandleComp< TSeqIdPtr >::operator()(), CPhyTreeCalc::CDistMatrix::operator()(), CAlnSeqIdsExtract< TAlnSeqId, TIdConverter >::operator()(), CFrameFinder::operator()(), CWinMaskCountsGenerator::operator()(), CSGQueryNodePreprocessor::operator()(), CQueryExecEvalFunc::operator()(), SBlobCopier::operator()(), CQueryExecPreProcessFunc::operator()(), CVisitorAccumulateProperty::operator()(), SBlobInserter::operator()(), SCompareDirEntries::operator()(), CAccVerCacheStorage::iterator::operator++(), CInputStreamSource::operator++(), CPluginValueConstraint::operator,(), operator<(), CTimeout::operator<(), CDeadline::operator<(), operator<<(), CManipulatorOProxy< TInputStream, TOutputStream >::operator<<(), CTimeout::operator<=(), CThreadPool_Task::operator=(), CBlastOptions::operator==(), operator==(), CTimeout::operator==(), CTimeout::operator>(), CTimeout::operator>=(), operator>>(), CManipulatorIProxy< TInputStream, TOutputStream >::operator>>(), CPluginArgSet::operator[](), CBlastSeqVectorFromCSeq_data::operator[](), CAlnIdMap< _TAlnVec, TAlnSeqIdExtract >::operator[](), CClusterer::CSingleCluster::operator[](), CQuery::CRow::operator[](), CArgs::operator[](), CSearchResultSet::operator[](), CGeneModelConfig::OptionStrToValue(), CSixFramesTransTrack::OptionStrToValue(), SIDPackingBuffer::Overflow(), PackedSeqLocToMaskedQueryRegions(), CCassQuery::ParamAsInt32(), CCassQuery::ParamAsInt64(), CCassQuery::ParamAsStr(), CMacroParser::Parse(), CQueryParseTree::Parse(), CGridCommandLineInterfaceApp::SOptions::SNCID::Parse(), CPubseqGatewayApp::ParseArgs(), CProjBulderApp::ParseArguments(), CNetServProtoParserBase::ParseArguments(), AbstractParser::ParseError(), CFormattingArgs::ParseFormattingString(), ParseSequenceRange(), ParseSequenceRangeOpenEnd(), CObjFingerprint::ParseSignature(), PatchTargetSequence(), HST::CHttpReply< CPendingOperation >::PeekPending(), CPerfLogger::Post(), HST::CHttpReply< CPendingOperation >::Postpone(), HST::CHttpReply< CPendingOperation >::PostponedStart(), CSeq_descr::PostRead(), CAbstractProjectItem::PostRead(), variation_ref::CVariationUtil::PrecursorToProt(), HST::CHttpReply< CPendingOperation >::PrepareChunk(), CQueryFuncPromoteBase::PreProcess(), CIndexedDb_Old::PreSearch(), CSeq_descr::PreWrite(), CTabularFormatter_MismatchPositions::Print(), CTabularFormatter_Defline::Print(), CTabularFormatter_ProtRef::Print(), CTabularFormatter_TaxId::Print(), CTabularFormatter_OrgName::Print(), CTabularFormatter_ExonIntrons::Print(), CTabularFormatter_Cigar::Print(), CTabularFormatter_Traceback::Print(), CHTMLText::PrintBegin(), PrintBioseqXML(), CPrintTaxFields::PrintEntry(), CBlastFormatterApp::PrintFormattedOutput(), CTabularFormatter_AllSeqIds::PrintHeader(), CTabularFormatter_SeqId::PrintHeader(), CTabularFormatter_AlignStart::PrintHeader(), CTabularFormatter_AlignEnd::PrintHeader(), CTabularFormatter_AlignStrand::PrintHeader(), CTabularFormatter_SeqLength::PrintHeader(), CTabularFormatter_MismatchPositions::PrintHeader(), CTabularFormatter_GapRanges::PrintHeader(), CTabularFormatter_Defline::PrintHeader(), CTabularFormatter_ProtRef::PrintHeader(), CTabularFormatter_TaxId::PrintHeader(), CTabularFormatter_OrgName::PrintHeader(), CTabularFormatter_BiggestGapBases::PrintHeader(), CTabularFormatter_SeqChrom::PrintHeader(), CTabularFormatter_SeqClone::PrintHeader(), CTabularFormatter_Tech::PrintHeader(), CTabularFormatter_DiscStrand::PrintHeader(), CTabularFormatter_AssemblyInfo::PrintHeader(), CTabularFormatter_PatchType::PrintHeader(), CTabularFormatter_NearestGap::PrintHeader(), CTabularFormatter_SeqId::PrintHelpText(), CTabularFormatter_AlignStart::PrintHelpText(), CTabularFormatter_AlignEnd::PrintHelpText(), CTabularFormatter_AlignStrand::PrintHelpText(), CTabularFormatter_SeqLength::PrintHelpText(), CTabularFormatter_Defline::PrintHelpText(), CTabularFormatter_ProtRef::PrintHelpText(), CTabularFormatter_TaxId::PrintHelpText(), CTabularFormatter_OrgName::PrintHelpText(), CTabularFormatter_SeqChrom::PrintHelpText(), CTabularFormatter_SeqClone::PrintHelpText(), CTabularFormatter_Tech::PrintHelpText(), CTabularFormatter_DiscStrand::PrintHelpText(), CTabularFormatter_AssemblyInfo::PrintHelpText(), CTabularFormatter_PatchType::PrintHelpText(), CTabularFormatter_NearestGap::PrintHelpText(), CGnomonEngine::PrintInfo(), CBlastFormat::PrintOneResultSet(), PrintSAM(), CPsiBlastInputClustalW::Process(), CReadDispatcher::Process(), CCddInputData::Process(), CPsiBlastInputData::Process(), CArgDescMandatory::ProcessArgument(), CTLSHandler::ProcessAsnInput(), CBiosampleChkApp::ProcessAsnInput(), CProcessor::ProcessBlobFromID2Data(), CDataTool::ProcessData(), CProcessor_ID2::ProcessData(), CArgDescMandatory::ProcessDefault(), CCassQuery::ProcessFutureResult(), CCgiApplication::ProcessHelpRequest(), CProcessor::ProcessObjStream(), CBiosampleChkApp::ProcessOneDirectory(), CBiosampleChkApp::ProcessOneFile(), CCassConnectionFactory::ProcessParams(), CNetCacheBlobFetchApp::ProcessRequest(), CBlastHitMatrixCGIApplication::ProcessRequest(), CSourceQualifiersReader::ProcessSourceQualifiers(), CCgiApplication::ProcessVersionRequest(), ProgramNameToEnum(), ProjectExon_newlogic(), CPromote::PromoteFeatures(), PromoteIfDifferent(), CQueryNodeValue::PromoteTo(), variation_ref::CVariationUtil::ProtToPrecursor(), PsiBlastSetupScoreBlock(), CPsiBlastValidate::Pssm(), CNetICacheClient::Purge(), CAlnIdMap< _TAlnVec, TAlnSeqIdExtract >::push_back(), CBlockingQueue< TRequest >::Put(), CNetScheduleExecutor::PutFailure(), CNetScheduleExecutor::PutProgressMsg(), CQueue::PutResult(), CCassQuery::Query(), CPsiBlastValidate::QueryFactory(), CBlastQueryFilteredFrames::QueryHasMultipleFrames(), CQueueDataBase::QueueInfo(), CBlastAsyncFormatThread::QueueResults(), CSeqIdChunkFile::RawRead(), CChunkFile::RawRead(), SNetStorageServerParameters::Read(), CGlimmerReader::Read(), CNlmZipBtRdr::Read(), CSeq_annot_SNP_Info_Reader::Read(), CAlnAsnReader::Read(), SBamIndexRefIndex::Read(), CZipCompressionFile::Read(), CLZOCompressionFile::Read(), CFileIO::Read(), read_gi(), read_size(), read_string(), read_unsigned(), CQueue::ReadAndTouchJob(), SNetCacheAPIImpl::ReadBuffer(), SNetICacheClientImpl::ReadCurrentBlobNotOlderThan(), CBDB_File::ReadCursor(), CWinMaskConfig::Reader(), SNS_Parameters::ReadErrorEmulatorSection(), CGeneFileUtils::ReadGeneInfo(), CImageIOBmp::ReadImage(), CImageIORaw::ReadImage(), CImageIOSgi::ReadImage(), CImageIOPng::ReadImage(), CImageIOTiff::ReadImage(), CImageIOJpeg::ReadImage(), CImageIOGif::ReadImage(), CImageIORaw::ReadImageInfo(), CImageIOBmp::ReadImageInfo(), CImageIOSgi::ReadImageInfo(), CImageIOTiff::ReadImageInfo(), CImageIOJpeg::ReadImageInfo(), CImageIOPng::ReadImageInfo(), CImageIOGif::ReadImageInfo(), CReader::ReadInt(), ReadIntoUtf8(), CResultZBtSrcX::ReadLength(), CJsonOverUTTPReader::ReadMessage(), CRowReaderStream_IANA_CSV::ReadRowData(), CUpdateSeq_Input::ReadSingleAccession(), CUpdateSeq_Input::ReadSingleUpdateSequence(), CObjectIStreamJson::ReadString(), CUpdateSeq_Input::ReadUpdateSequenceFromClipboard(), CUpdateMultipleSeq_Input::ReadUpdSeqs_FromClipboard(), CUpdateMultipleSeq_Input::ReadUpdSeqs_FromFile(), CSeqMaskerIstatOBinary::readWord(), CSeqDB_IdRemapper::RealToVol(), CCassConnection::Reconnect(), CQueue::RedoJob(), CColumnValidatorRegistry::Register(), CBioTreeFeatureDictionary::Register(), CStdPoolOfThreads::Register(), CNSClientsRegistry::RegisterBlacklistedJob(), CNSClientsRegistry::RegisterJob(), CWriteObjectList::RegisterObject(), CWorkbench::RegisterService(), CNetICacheClient::RegisterSession(), CPIDGuard::Release(), CNetStorageGCDatabase::ReleaseAppLock(), CObject::ReleaseReference(), CClusterer::ReleaseTree(), CCassConnectionFactory::ReloadConfig(), NDirectNetStorageImpl::CObj::Relocate(), variation_ref::CVariationUtil::Remap(), variation::CVariationUtil::Remap(), RemapAlignToLoc(), CStd_seg::RemapToLoc(), CDense_seg::RemapToLoc(), CSeq_align::RemapToLoc(), CUnsupportedEditSaver::Remove(), CBioseq_Base_Info::RemoveAnnot(), CDataSource::RemoveAnnot(), CScope::RemoveAnnot(), CNCBINode::RemoveChild(), CProjectFolder::RemoveChildFolder(), CScope_Impl::RemoveDataLoader(), CUnsupportedEditSaver::RemoveDesc(), CBioseq_set_Info::RemoveEntry(), CDataSource::RemoveEntry(), CSeq_annot_Info::RemoveFeatId(), CSeq_feat_EditHandle::RemoveFeatId(), CSeq_feat_EditHandle::RemoveFeatXref(), CTSE_ScopeInfo::RemoveFromHistory(), CUnsupportedEditSaver::RemoveId(), CNetStorageGCDatabase::RemoveObject(), CSeqMap::RemoveSegment(), CScope_Impl::RemoveTopLevelAnnot(), CScope_Impl::RemoveTopLevelBioseq(), CScope_Impl::RemoveTopLevelBioseq_set(), CScope_Impl::RemoveTopLevelSeqEntry(), CUnsupportedEditSaver::RemoveTSE(), CBDB_RawFile::Rename(), CSeq_annot_Info::ReorderFtable(), CUnsupportedEditSaver::Replace(), CDataSource::ReplaceAnnot(), CScope::ReplaceAnnot(), ReplaceVisibleChar(), CThreadPool_Impl::RequestExclusiveExecution(), CWorkerNodeJobContext::RequestExclusiveMode(), CQueue::RereadJob(), CQueue::RescheduleJob(), CSeqDB::TSequenceRanges::reserve(), CSparseKmerCounts::ReserveCountsMem(), IAlignSource::Reset(), CSequence::Reset(), CSparseKmerCounts::Reset(), HST::CHttpReply< CPendingOperation >::Reset(), CRandom::Reset(), CNcbiArguments::Reset(), CBinaryKmerCounts::Reset(), CUnsupportedEditSaver::ResetBioseqSetClass(), CUnsupportedEditSaver::ResetBioseqSetColl(), CUnsupportedEditSaver::ResetBioseqSetDate(), CUnsupportedEditSaver::ResetBioseqSetId(), CUnsupportedEditSaver::ResetBioseqSetLevel(), CUnsupportedEditSaver::ResetBioseqSetRelease(), CVariation_ref::ResetClinical_test(), CUnsupportedEditSaver::ResetDescr(), CDataSource_ScopeInfo::ResetHistory(), CUnsupportedEditSaver::ResetIds(), CVariation_ref::ResetPopulation_data(), CVariation_ref::ResetPub(), CUnsupportedEditSaver::ResetSeqInst(), CUnsupportedEditSaver::ResetSeqInstExt(), CUnsupportedEditSaver::ResetSeqInstFuzz(), CUnsupportedEditSaver::ResetSeqInstHist(), CUnsupportedEditSaver::ResetSeqInstLength(), CUnsupportedEditSaver::ResetSeqInstMol(), CUnsupportedEditSaver::ResetSeqInstRepr(), CUnsupportedEditSaver::ResetSeqInstSeq_data(), CUnsupportedEditSaver::ResetSeqInstStrand(), CUnsupportedEditSaver::ResetSeqInstTopology(), CDataTypeModule::Resolve(), CQueryFuncPromoteBase::ResolveAndPromote(), CNSGroupsRegistry::ResolveGroup(), CReferenceDataType::ResolveLocalOrParent(), CNSGroupsRegistry::RestrictByGroup(), CObjectManagerEngine::ResumeJob(), CThreadPoolEngine::ResumeJob(), CSchedulerEngine::ResumeJob(), CAppJobDispatcher::ResumeJob(), CNetBlastJobDescriptor::Retrieve(), CQueue::ReturnJob(), CSeqManip::Reverse(), CSeq_align::Reverse(), CSeqManip::ReverseComplement(), ReverseComplement(), CObjectManager::RevokeDataLoader(), CScopeTransaction_Impl::RollBack(), CTime::Round(), CNcbiTable< TValue, TRow, TColumn >::Row(), CNcbiTable< TValue, TRow, TColumn >::RowIdx(), CCompartApplication::Run(), CHgvsToSeqfeatConverter::Run(), CNetScheduleDApp::Run(), CNetStorageDApp::Run(), CImageDemoApp::Run(), CCompartApp::Run(), CNSSubmitRemoteJobApp::Run(), CCacheIndexCopyApp::Run(), CNSRemoteJobControlApp::Run(), CDataTool::Run(), CNetScheduleControl::Run(), CSplignApp::Run(), CLocalSeqSearch::Run(), CNetCacheControl::Run(), CGffDeconcatApp::Run(), CProteinMatchApp::Run(), pub_report::CPubReportApp::Run(), CGBProjectTool::Run(), CMultiApplication::Run(), CAppHitFilter::Run(), CPSSMAligner::Run(), CBlastTracebackSearch::Run(), CBlastPrelimSearch::Run(), CAsn2FastaApp::Run(), CCleanupApp::Run(), CNWAligner::Run(), CMergeVolumes::Run(), CPubseqGatewayApp::Run(), CLocalPssmSearch::Run(), CId1FetchApp::Run(), CBlastdbConvertApp::Run(), CSeedTopApp::Run(), CMagicBlastApp::Run(), CAsnvalApp::Run(), CTbl2AsnApp::Run(), CIdfetchApplication::Run(), CPssmEngine::Run(), CPrimeCacheApplication::Run(), CBiosampleChkApp::Run(), CScorePValuesCalc::Run(), CSplign::Run(), CAsn2FlatApp::Run(), CClusterer::Run(), CGumbelParamsCalc::Run(), CFeatCompareJob_Align::Run(), TSL::CTcpDaemon< HST::CHttpProto< P >, HST::CHttpConnection< P >, HST::CHttpDaemon< P > >::Run(), CFeatCompareJob_Location::Run(), CCassQuery::RunBatch(), CUpdateSeq_Input::RunBlast2Seq(), RunLowTraceScript(), CBlastTracebackSearch::RunSimple(), CTestSingleAln_All::RunTest(), s_AddBioseqToPartsSet(), s_AddBioseqToSegset(), variation_ref::CVariationUtil::s_AddIntronicOffsets(), variation::CVariationUtil::s_AddIntronicOffsets(), s_AddSeqDataToPssm(), s_AgpWrite(), s_AlignToSeqRanges(), CTrackMgrClient::s_Ask(), s_BasicValidation(), s_BlastMessageToException(), s_BuildAlignDataSource(), s_BuildSeqMasker(), s_CancelEditingSession(), s_CheckAgainstNullData(), s_CheckDistMatrix(), s_CheckDuplicateIds(), s_CheckForBlastSeqSrcErrors(), s_CheckInputSize(), s_CheckKeySubkey(), s_CheckOutputSize(), s_ChoiceType(), CMacroFunction_Clear3Partial::s_Clear3EndPartial(), CMacroFunction_Clear5Partial::s_Clear5EndPartial(), variation_ref::CVariationUtil::s_CollapseAmbiguities(), variation::CVariationUtil::s_CollapseAmbiguities(), CSplign::s_ComputeStats(), s_ComputeTraceback(), s_Convert(), s_ConvertionNotSupported(), CMacroFunction_ConvertLocStrand::s_ConvertLocationStrand(), CMacroFunction_ConvertLocType::s_ConvertLocationType(), s_ConvertValue(), s_Create_Args_L(), s_Create_Args_V(), s_Create_Env(), s_CreateAliasFilePriv(), s_CreateInputSource(), s_CreateQueryMap(), s_CreateScope(), s_CreateThirdPartyLibsInstallMakefile(), s_Date2Number(), CWinMaskConfig::s_DetermineAppType(), s_DoesBlastDbExist(), s_ExportSearchStrategy(), s_Extract(), s_FillBlastOutput(), s_FillModuleListPSAPI(), s_FillModuleListTH32(), s_FindFontPtr(), s_FixBioseqDeltas(), CUpdateSeq_Input::s_FixCollidingIDs_Bioseq(), s_FormatIds< CSeq_id_Handle >(), s_GetAlignmentLength(), s_GetAlignmentMismatches(), s_GetAlignmentSpans_Exon(), s_GetAlignmentSpans_Interval(), s_GetAlignmentSpans_Intron(), s_GetAnchors(), s_GetCountIdentityMismatch(), s_GetDetails(), s_GetDiskSpace_PANFS(), s_GetFileSystemInfo(), s_GetFormat(), s_GetGapCount(), s_GetGeneWeight(), s_GetMakefileIncludes(), s_GetNucIdentityMismatch(), s_GetNumFrameshifts(), s_GetProteinWeight(), s_GetQueryBioseq(), s_GetQuerySequence(), s_GetRealCompileFlags(), s_GetRealMatchFlags(), s_GetSeqAnnotChoiceMask(), s_GetSeqIdChoiceMask(), s_GetSeqTypeChar(), s_GetSequences(), s_GetSplicedSegIdentityMismatch(), s_GetTaxIDList(), s_GrabSOCK(), s_HttpConnectorBuilder(), s_ImportPssm(), s_ImportSearchStrategy(), s_Init(), s_InitializeExportStrategy(), s_InitSeqInfoSrc(), s_IsamExtension(), s_LayoutStrToValue(), s_LoadSeqAnnot(), s_LOCK_Handler(), s_LookForOidlistInAliasFile(), CHitFilter< THit >::s_MergeAbutting(), s_ParseGetJobResponse(), s_ParseInt(), s_ParseStr(), s_PreprocessSeqAnnots(), s_ProcessIntraScaffoldTail(), s_QueryFactoryBlastSeqSrcInit(), s_QueryOptsInFmtToFastaInFmt(), s_Read(), CSplignApp::s_ReadBlastHit(), s_ReadObject(), CMacroFunction_RemoveBothPartials::s_RemoveBothPartials(), s_RemoveItem(), variation::CVariationUtil::s_ResolveIntronicOffsets(), s_RoleFitsSubset(), CUpdateSeq_Input::s_RunBlast2AASeq(), CHitFilter< THit >::s_RunGreedy(), s_SaveToSmartClient(), s_SeqDB_IsBinaryNumericList(), s_SeqDBFitsInFour(), s_SeqLoc2MaskedSubjRanges(), s_SequenceIsProtein(), s_ServiceConnectorBuilder(), CMacroFunction_Set3Partial::s_Set3EndPartial(), CMacroFunction_Set5Partial::s_Set5EndPartial(), s_SetAnyContentFromFields(), CMacroFunction_SetBothPartials::s_SetBothEndsPartial(), s_SetCompositionBasedStats(), s_SpawnUnix(), s_Split(), s_SplitVersion(), s_StrToAppState(), s_SubLocDeltaSeq(), s_SubtractTail(), s_TestForOverlapEx(), s_ThrowError(), s_ThrowIfDifferentMutexes(), s_ThrowSomeException(), CHitFilter< THit >::s_TrackHit(), s_UnpackContainerField(), s_UnpackPrimitiveField(), variation_ref::CVariationUtil::s_UntranslateProt(), variation::CVariationUtil::s_UntranslateProt(), s_Validate(), s_ValidateSeqLiteral(), s_VerifySeqidlist(), SafeSetupQueryInfo(), sAssertMainThread(), CGBProjectHandle::Save(), CArchiveMemory::Save(), CNcbiResourceInfoFile::SaveFile(), CBiosampleChkApp::SaveFile(), CwxTableListCtrl::SaveTableSettings(), CProjectService::SaveWorkspace(), SBlastSequence::SBlastSequence(), SCmdLineArgListImpl::SCmdLineArgListImpl(), CSplicedAligner16::ScoreFromTranscript(), CSplicedAligner32::ScoreFromTranscript(), CPSSMAligner::ScoreFromTranscript(), CNWAligner::ScoreFromTranscript(), CByteSourceReader::Seekg(), CStreamByteSourceReader::Seekg(), CSeq_entry_Info::SelectSeq(), CSeq_entry_Info::SelectSet(), HST::CHttpReply< CPendingOperation >::Send400(), HST::CHttpReply< CPendingOperation >::Send404(), HST::CHttpReply< CPendingOperation >::Send502(), HST::CHttpReply< CPendingOperation >::Send503(), CMessageSender::SendOutputBuffer(), SeqDB_ReadBinaryGiList(), SeqDB_ReadMemoryGiList(), SeqDB_ReadMemoryTiList(), SeqDB_ThrowException(), SeqDB_UnpackAmbiguities(), SerialAssign(), SerialEquals(), Serialize(), SERV_GetServers(), CTextseq_id::Set(), CAlignmentCollectionScore::Set(), SRegisterLoaderInfo< CDataLoader >::Set(), CNcbiEnvironment::Set(), CRegexp::Set(), CSeq_id::Set(), CTimeSpan::Set(), CTimeout::Set(), CScope_Impl::SetActiveTransaction(), CQueue::SetAffinity(), CImage::SetAlpha(), CAlnMap::SetAnchor(), CSeq_entry::SetAnnot(), CGlResMgr::SetApiLevel(), CArgDescriptions::SetArgsType(), NDirectNetStorageImpl::CObj::SetAttribute(), CPub::SetAuthors(), CBDB_Volumes::SetBackupLocation(), CUnsupportedEditSaver::SetBioseqSetClass(), CUnsupportedEditSaver::SetBioseqSetColl(), CUnsupportedEditSaver::SetBioseqSetDate(), CUnsupportedEditSaver::SetBioseqSetId(), CUnsupportedEditSaver::SetBioseqSetLevel(), CUnsupportedEditSaver::SetBioseqSetRelease(), CWriteDB_Impl::SetBlobData(), CDBAPI_Cache::SetBlobVersionAsCurrent(), CSQLITE3_Cache::SetBlobVersionAsValid(), CCompressionStreambuf::setbuf(), CPushback_Streambuf::setbuf(), CConn_Streambuf::setbuf(), CCompressionProcessor::SetBusy(), CCache< TKey, TValue, THandler, TLock, TSize >::SetCapacity(), CImage::SetChannel(), CNSClientsRegistry::SetClientData(), CNSClient::SetClientData(), CVariation_ref::SetClinical_test(), CBlastSeqVectorFromCSeq_data::SetCoding(), CPhyloTreeScheme::SetColor(), CSplign::SetCompartmentPenalty(), CArgDescriptions::SetConstraint(), CArgDesc::SetConstraint(), HST::CHttpReply< CPendingOperation >::SetContentLength(), CHttpFormData::SetContentType(), CRemoteBlast::SetDatabase(), CCassBlobLoader::SetDataReadyCB(), CBDB_Volumes::SetDateRange(), CTime::SetDay(), CVariantInfo::SetDelayBuffer(), CImage::SetDepth(), CUnsupportedEditSaver::SetDescr(), CSeq_entry::SetDescr(), CSeq_entry_EditHandle::SetDescr(), CBioseq_set_EditHandle::SetDescr(), CBioseq_EditHandle::SetDescr(), SetDiagDieLevel(), SetDiagPostLevel(), CUniSequenceDataType::SetElementType(), CRemoteBlast::SetEntrezQuery(), CArgDescriptions::SetErrorHandler(), CProSplign::CImplementation::SetExons(), CPhyloNodeData::SetFeature(), CUser_field::SetFieldRef(), CRegistryFile::SetFieldToValue(), CRegistryWriteView::SetFieldToValue(), CFileIO::SetFilePos(), CFileIO::SetFileSize(), CSQLITE_Connection::SetFlags(), CProSplign::CImplementation::SetFlanks(), CTimeFormat::SetFormat(), CRemoteBlast::SetGIList(), CSearchDatabase::SetGiList(), CCgiResponse::SetHeaderValue(), CAlignShadow::SetId(), CReader::SetIncludeHUP(), CEnumeratedTypeValues::SetInternalName(), CTypeInfo::SetInternalName(), HST::CHttpReply< CPendingOperation >::SetJsonContentType(), CPrefetchRequest::SetListener(), CObjectManager::SetLoaderOptions(), CWriteDB_Impl::SetMaskData(), CWriteDB_Impl::SetMaskedLetters(), CAlignShadow::SetMax(), CSeqDBVol::SetMemBit(), CAlignShadow::SetMin(), CSplign::SetMinCompartmentIdentity(), CSplign::SetMinExonIdentity(), CSplign::SetMinSingletonIdentity(), CEnumeratedTypeValues::SetModuleName(), CTypeInfo::SetModuleName(), CTime::SetMonth(), CRemoteBlast::SetNegativeGIList(), CSearchDatabase::SetNegativeGiList(), CNSClientsRegistry::SetNodeWaiting(), CVariantInfo::SetObjectPointer(), CSeqDBImpl::SetOffsetRanges(), CCassQuery::SetOnData(), CCassQuery::SetOnData2(), CBlastAppArgs::SetOptions(), CBlastAppArgs::SetOptionsForSavedStrategy(), CSeqMaskerOstat::setParam(), CServer::SetParameters(), CClassTypeInfo::SetParentClass(), CNetCacheAPIParameters::SetPassword(), CNWAligner::SetPattern(), CVariantInfo::SetPointer(), CChoicePointerTypeInfo::SetPointerType(), CSplign::SetPolyaExtIdentity(), CVariation_ref::SetPopulation_data(), CNSClientsRegistry::SetPreferredAffinities(), CPrefetchRequest::SetProgress(), CVariantProperties::SetProject_data(), CPsiBlastImpl::SetPssm(), CVariation_ref::SetPub(), CMultiAligner::SetQueries(), CRemoteBlast::SetQueries(), CRemotePssmSearch::SetQuery(), CPhyTreeCalc::SetQuery(), CRemoteSeqSearch::SetQueryFactory(), CRemoteBlast::SetQueryMasks(), variation_ref::CVariationUtil::SetReferenceSequence(), CUser_object::SetRefGeneTrackingStatus(), CSeqMap::SetRegionInChunk(), CPSSMAligner::SetScoreMatrix(), CRandom::SetSeed(), CTSE_Info::SetSeq_entry(), CBlastDBExtractor::SetSeqId(), CUnsupportedEditSaver::SetSeqInst(), CUnsupportedEditSaver::SetSeqInstExt(), CUnsupportedEditSaver::SetSeqInstFuzz(), CUnsupportedEditSaver::SetSeqInstHist(), CUnsupportedEditSaver::SetSeqInstLength(), CUnsupportedEditSaver::SetSeqInstMol(), CUnsupportedEditSaver::SetSeqInstRepr(), CUnsupportedEditSaver::SetSeqInstSeq_data(), CUnsupportedEditSaver::SetSeqInstStrand(), CUnsupportedEditSaver::SetSeqInstTopology(), CSeq_loc_Mapper_Base::SetSeqTypeById(), CSeqMap_I::SetSequence(), CPSSMAligner::SetSequences(), CNWAligner::SetSequences(), CRequestContext::SetSessionID(), CBandAligner::SetShift(), CPhyloTreeScheme::SetSize(), CAlignShadow::SetStart(), CJobStatusTracker::SetStatus(), CAlignShadow::SetStop(), CAlignShadow::SetStrand(), CIStreamBuffer::SetStreamPos(), CArgValue::SetStringList(), CVariantInfo::SetSubClass(), CRemoteBlast::SetSubjectSequences(), CParam< TDescription >::SetThreadDefault(), CNetICacheClient::SetTimeStampPolicy(), CTime::SetTimeTM(), CDiscNucleotideOptionsHandle::SetTraditionalBlastnDefaults(), CCgiResponse::SetTrailerValue(), CSeqMaskerOstat::setUnitCount(), CSeqMaskerOstat::setUnitSize(), CGridCommandLineInterfaceApp::SetUp_AdminCmd(), CGridCommandLineInterfaceApp::SetUp_NetCacheAdminCmd(), CGridCommandLineInterfaceApp::SetUp_NetCacheCmd(), CGridCommandLineInterfaceApp::SetUp_NetScheduleCmd(), CGridCommandLineInterfaceApp::SetUp_NetStorageCmd(), CUpdateSeq_Input::SetUpdateBioseq(), CCassQuery::SetupOnDataCallback(), SetupQueries_OMF(), SetupQueryInfo_OMF(), NuclWordFinderTextFixture::setupSequences(), SetupSubjects_OMF(), CEnumeratedTypeInfo::SetValueInt8(), CEnumeratedTypeInfo::SetValueUint4(), CEnumeratedTypeInfo::SetValueUint8(), CNetICacheClient::SetVersionRetention(), CSplicedAligner::SetWi(), CDiscNucleotideOptionsHandle::SetWordSize(), CTime::SetYear(), sFindAnchorRow(), SGridWorkerNodeImpl::SGridWorkerNodeImpl(), CConditionVariable::SignalAll(), CConditionVariable::SignalSome(), CPhyTreeFormatter::SimplifyTree(), CAaInterval::size(), IBlastSeqVector::size(), CAlignCompare::SAlignment::Slice(), CFeatureGenerator::SImplementation::SMapper::SMapper(), NAutomation::SNetCacheServer::SNetCacheServer(), NAutomation::SNetScheduleServer::SNetScheduleServer(), NAutomation::SNetStorageServer::SNetStorageServer(), CAlignSort::SortAlignments(), CBDB_Volumes::SortVolumes(), SPatternUnit::SPatternUnit(), CSeq_align::SplitOnLongDiscontinuity(), SplitQuery_GetChunkSize(), SSeqIdRange::SSeqIdRange(), CAlnMixSegment::StartItsConsistencyCheck(), CThreadPoolEngine::StartJob(), CSchedulerEngine::StartJob(), CAccVerCacheDB::Storage(), CBDB_MergeStoreAsync< BStore >::Store(), CCompressionUtil::StoreUI2(), CCompressionUtil::StoreUI4(), CEnumParser< TEnum, TParam >::StringToEnum(), CParamParser< TDescription, TParam >::StringToValue(), CGeneModelConfig::StyleStrToValue(), CNetBlastJobDescriptor::Submit(), CQueue::Submit(), CQueue::SubmitBatch(), CNetScheduleSubmitter::SubmitJobBatch(), SNetScheduleSubmitterImpl::SubmitJobImpl(), CObjectManagerEngine::SuspendJob(), CThreadPoolEngine::SuspendJob(), CSchedulerEngine::SuspendJob(), CAppJobDispatcher::SuspendJob(), CStd_seg::SwapRows(), CDense_seg::SwapRows(), CSeq_align::SwapRows(), NAutomation::SWorkerNode::SWorkerNode(), CTypeRef::sx_GetAbort(), CParam< TDescription >::sx_GetDefault(), CTypeRef::sx_GetProc(), CTypeRef::sx_GetResolve(), sx_MakeUniqueId(), CHitFilter< THit >::sx_Merge(), CBlastTabular::sx_MineSegment(), sx_Round(), CExec::System(), CSeq_annot_EditHandle::TakeAllAnnots(), CSeqDBLMDBSet::TaxIdsToOids(), CSeqDBImpl::TaxIdsToOids(), CMacroFunction_SetColor::TheFunction(), CMacroFunction_SetSize::TheFunction(), CMacroFunction_SetProperty::TheFunction(), CMacroFunction_SubtreeSum::TheFunction(), CMacroFunction_AddToSelectionSet::TheFunction(), CMacroFunction_IsNull::TheFunction(), CMacroFunction_Date::TheFunction(), CMacroFunction_ApplyCDS::TheFunction(), CMacroFunction_ApplyRNA::TheFunction(), CMacroFunction_ApplyOtherFeature::TheFunction(), CContainerTypeInfoFunctions::Throw(), ThrowAddProhibited(), CStlClassInfoUtil::ThrowDuplicateElementError(), CVoidTypeFunctions::ThrowException(), ThrowIfInvalidTask(), ThrowIllegalCall(), ThrowIncompatibleValue(), ThrowIntegerOverflow(), ncbi_namespace_mutex_mt::SSystemFastMutex::ThrowLockFailed(), ncbi_namespace_mutex_mt::SSystemMutex::ThrowNotOwned(), ThrowSyncQueueEmpty(), ThrowSyncQueueNoRoom(), ThrowSyncQueueTimeout(), ncbi_namespace_mutex_mt::SSystemFastMutex::ThrowTryLockFailed(), CSerialObject::ThrowUnassigned(), ncbi_namespace_mutex_mt::SSystemFastMutex::ThrowUninitialized(), ncbi_namespace_mutex_mt::SSystemFastMutex::ThrowUnlockFailed(), CBLASTParams::ToArgs(), CBLASTParams::ToArgVecBlastOptions(), CBLASTParams::ToBlastOptions(), CNWFormatter::SSegment::ToBuffer(), CSplign::SAlignedCompartment::ToBuffer(), CRowReaderStream_IANA_TSV::Tokenize(), CConn_MemoryStream::ToString(), CTime::ToTime(), CCacheWriter::CStoreBuffer::ToUint4(), CConn_MemoryStream::ToVector(), CFeatureGenerator::SImplementation::TransformProteinAlignToTranscript(), variation::CVariationUtil::TranslateNAtoAA(), CAlnVec::TranslateNAToAA(), CSixFramesTransTrack::TransStrToValue(), CFeatureGenerator::SImplementation::TrimHolesToCodons(), CSplignTrim::TrimHolesToCodons(), TSeqLocVector2Packed_seqint(), NTweakExon::TweakExon(), CHistParams::TypeStrToValue(), CRemoveTSE_EditCommand::Undo(), UnicodeToAscii(), CUnit::UnitToString(), CLockVectorGuard< TLockVect >::Unlock(), CInterProcessLock::Unlock(), CFileLock::Unlock(), CBDB_Volumes::UnLockVolume(), CWorkbench::UnRegisterService(), CNetICacheClient::UnRegisterSession(), CMD5::Update(), CAccVerCacheStorage::Update(), CSparseGraph::Update(), CCrossAlnRenderer::Update(), CNSClientId::Update(), CSplignTrim::UpdateAnnot(), CCassBlobOp::UpdateBlobFlags(), CIndexedDb_New::UpdateIndex(), CJobGCRegistry::UpdateLifetime(), CSDBAPI::UpdateMirror(), CPIDGuard::UpdatePID(), CNSClientsRegistry::UpdatePreferredAffinities(), CJobGCRegistry::UpdateReadVacantTime(), CBioSource::UpdateWithBioSample(), CSDBAPI::UseDriver(), UseXInclude(), CFileManifest::Validate(), CSpliced_seg::Validate(), CDense_diag::Validate(), CBlastOptionsLocal::Validate(), CDense_seg::Validate(), CScorePValuesOptions::Validate(), CSeq_align::Validate(), CRowReaderStream_IANA_TSV::Validate(), CGumbelParamsOptions::Validate(), NTweakExon::Validate(), CSerialFacetPattern::Validate(), CSerialFacetLength::Validate(), CMultiAlignerOptions::Validate(), CSerialFacetMultipleOf< TValue >::Validate(), CSerialFacetValue< TValue >::Validate(), CSerialFacetContainer::Validate(), ValidateAsmAccession(), CValidateVariant::ValidateIdentityInst(), CAsnvalApp::ValidateInput(), CValidateVariant::ValidateMicrosatelliteInst(), CAsnvalApp::ValidateOneFile(), CValidError_feat::ValidateTrnaCodons(), CQueryImpl::VerifyDone(), CStdPrefetch::Wait(), CCassQuery::Wait(), CCassQuery::WaitAsync(), CBlockingQueue< TRequest >::WaitForHunger(), CBlockingQueue< TRequest >::WaitForRoom(), CConditionVariable::WaitForSignal(), CBlastDbFormatter::Write(), CSeq_annot_SNP_Info_Reader::Write(), COStreamBuffer::Write(), CDBAPI_CacheIWriter::Write(), CZipCompressionFile::Write(), CLZOCompressionFile::Write(), CBinaryListBuilder::Write(), CFileIO::Write(), CGff3Writer::WriteAlign(), CAlnWriter::WriteAlignDenseSeg(), CBedGraphWriter::WriteAnnot(), CSerializable::WriteAsAsnBinary(), CSerializable::WriteAsAsnText(), CSerializable::WriteAsFasta(), CSerializable::WriteAsString(), CSerializable::WriteAsXML(), WriteBlastSeqidlistFile(), CWriter::WriteBytes(), CFileDataProvider::WriteData(), CMsvcConfigure::WriteExtraDefines(), CFastaOstreamEx::WriteFeature(), CHttpFormData::WriteFormData(), CCgiResponse::WriteHeader(), CImageIOBmp::WriteImage(), CImageIOSgi::WriteImage(), CImageIOJpeg::WriteImage(), CImageIOTiff::WriteImage(), CImageIOPng::WriteImage(), CImageIOGif::WriteImage(), CCmdLineArgList::WriteLine(), CFileManifest::WriteManyFilePaths(), CMsvcConfigure::WriteNcbiconfMsvcSite(), CWriteDB_Volume::WriteSequence(), CFastaOstream::WriteSequence(), CObjectTypeInfo::WrongTypeFamily(), CObjectIStreamIterator< TRoot >::CData::x_AcceptData(), CPoolOfThreads< TRequest >::x_AcceptRequest(), CSeqMap::x_Add(), CIdMapperGCAssembly::x_AddAliasMappings(), CArgDescriptions::x_AddDesc(), CProductStringBuilder::x_AddExonPart(), CCompartApp::CCompartment::x_AddHit(), CTime::x_AddHour(), CGBProjectTool::x_AddItem(), CJsonOverUTTPReader::x_AddNewNode(), CWriteDB_IsamIndex::x_AddPdb(), CSourceQualifiersReader::x_AddQualifiers(), CMakeBlastDBApp::x_AddSequenceData(), CNcbiTestTreeElement::x_AddToMustLeft(), CNcbiTestTreeElement::x_AddToMustRight(), variation::CVariationUtil::x_AdjustDelinsToInterval(), CSeq_loc_Mapper_Base::x_AdjustSeqTypesToProt(), CAsnvalApp::x_AliasLogFile(), CBandAligner::x_Align(), CNWAligner::x_Align(), CNgAligner::x_Align_Impl(), CMultiAligner::x_AlignFillerBlocks(), CMultiAligner::x_AlignInClusters(), CMultiAligner::x_AlignProgressive(), CReader::x_AllocConnection(), x_ApplyCmd(), CHTMLPage::x_ApplyFilters(), CMiscSeqTable::x_ApplyMiscSeqTableToSeqEntry(), CDataLoaderPatcher::x_ApplyPatches(), CRequestRateControl::x_Approve(), CBLASTParams::x_ArgsToBlastOptions(), variation::CHgvsParser::x_AsHgvsExpression(), variation::CHgvsParser::x_AsHgvsInstExpression(), CRPCClient_Base::x_Ask(), CObjectListTableModel::x_AssertRowValid(), CObjectList::x_AssertValidColumn(), CObjectList::x_AssertValidLabel(), CObjectList::x_AssertValidRow(), x_Assign(), CMultiAligner::x_AssignDefaultResFreqs(), CMaskInfoRegistry::x_AssignId(), CMultiAligner::x_AssignRPSResFreqs(), variation::CVariationUtil::x_AsVariation(), variation::CVariationUtil::x_AsVariation_ref(), CBioseq_Info::x_AttachMap(), CThreadPool_Controller::x_AttachToPool(), CBlastQuerySourceBioseqSet::x_BioseqSanityCheck(), CMultiAligner::x_BuildAlignmentIterative(), CMakeBlastDBApp::x_BuildDatabase(), CSeqFormatter::x_Builder(), CBlastKmerBuildIndex::x_BuildIndex(), CDumpASNIndex::x_BuildIndexAndSeqIdInfo(), CSeqDBImpl::x_BuildMaskAlgorithmList(), CPrimeCacheApplication::x_CacheSeqEntry(), CTabularFormatter_BiggestGapBases::x_CalcBiggestGap(), CBioseq_Info::x_CalcBioseqLength(), CPhyTreeCalc::x_CalcDistMatrix(), CPhyTreeCalc::x_CalcDivergenceMatrix(), CBDB_Volumes::x_ChangeCurrentStatus(), CQueue::x_ChangeReadingStatus(), SNSCommandArguments::x_CheckAffinityList(), CNetScheduleHandler::x_CheckAuthorizationToken(), CArgDescriptions::x_CheckAutoHelp(), CQuery::CRow::x_CheckColumnNumber(), CRemoteBlast::x_CheckConfig(), CMacroFunction_StringConstraints::x_CheckConstraintContainer(), CMacroFunction_StringConstraints::x_CheckConstraintWithinClass(), CNetStorageHandler::x_CheckExistanceStatus(), CNetStorageGCApp::x_CheckExpiration(), CNetStorageHandler::x_CheckExpirationStatus(), CSQLITE_Connection::x_CheckFlagsValidity(), CNetScheduleHandler::x_CheckGetParameters(), SNSCommandArguments::x_CheckGroupList(), CNetStorageHandler::x_CheckICacheSettings(), CMakeProfileDBApp::x_CheckInputScoremat(), CNetScheduleHandler::x_CheckNonAnonymousClient(), CNetStorageHandler::x_CheckNonAnonymousClient(), CNetStorageHandler::x_CheckObjectLoc(), CQueueDataBase::x_CheckOpenPreconditions(), CBandAligner::x_CheckParameters(), CNetScheduleHandler::x_CheckPortAndTimeout(), CNetScheduleHandler::x_CheckQInf2Parameters(), SNSCommandArguments::x_CheckQueueName(), CNetScheduleHandler::x_CheckReadParameters(), CQueryImpl::x_CheckRowCount(), CHttpCookie_CI::x_CheckState(), CCgiSession_NetCache::x_CheckStatus(), CNSTDatabase::x_CheckStatus(), CNetStorageHandler::x_CheckUserKey(), CBamRefSeqIterator::x_CheckValid(), CBamAlignIterator::x_CheckValid(), CSeq_entry_Info::x_CheckWhich(), CAlignCleanup::x_Cleanup_AlignVec(), CAlignCleanup::x_Cleanup_AnchoredAln(), CAnnot_Collector::x_CollectSegments(), CWriteDB_LMDB::x_CommitTransaction(), CWriteDB_TaxID::x_CommitTransaction(), CSeq_loc::x_CompareSingleId(), CElementaryMatching::x_CompartPair(), CElementaryMatching::x_CompartVolume(), CWriteDB_Impl::x_ComputeSeqLength(), CNaSeqlocHelper::x_ComputeSiteIndex(), CPhyTreeCalc::x_ComputeTree(), CMultiAligner::x_ComputeTree(), CRPCClient< TRequest, TReply >::x_Connect(), CDatabase::x_ConnectAsNeeded(), CId2Reader::x_ConnectAtSlot(), CPubseq2Reader::x_ConnectAtSlot(), CId1Reader::x_ConnectAtSlot(), CPubseqReader::x_ConnectAtSlot(), CRPCClient< TRequest, TReply >::x_ConnectURL(), CGBankLoadingJob::x_Convert(), CNetStorageHandler::x_ConvertMetadataArgument(), CSeq_align_Mapper_Base::x_ConvertSegment(), CWriteDB_Impl::x_CookIds(), CWriteDB_Impl::x_CookSequence(), CSeq_id_Resolver__LRG::x_Create(), CSeq_id_Resolver__CCDS::x_Create(), CMemoryFileMap::x_Create(), CArgDescriptions::x_CreateArg(), CMultiAligner::x_CreateBlastQueries(), CFeatureGenerator::SImplementation::x_CreateCdsFeature(), CHgvsNaIrepReader::x_CreateConversionVarref(), CBamLoadingJob::x_CreateDataLoader(), CHgvsProtIrepReader::x_CreateDelinsSubvarref(), CMakeProfileDBApp::x_CreateDeltaList(), CHgvsProtIrepReader::x_CreateIdentitySubvarref(), CElementaryMatching::x_CreateIndex(), CHgvsProtIrepReader::x_CreateInsertionSubvarref(), CCddInputData::x_CreateMsa(), CWriteDB_LMDB::x_CreateOidToSeqidsLookupFile(), CWriteDB_TaxID::x_CreateOidToTaxIdsLookupFile(), CMultiAligner::x_CreatePatternQueries(), CTaxTreeToolJob::x_CreateProjectItems(), CMSAToolJob::x_CreateProjectItems(), CMergeAlignmentsJob::x_CreateProjectItems(), CGroupAlignmentsJob::x_CreateProjectItems(), CCreateNeedlemanWunschJob::x_CreateProjectItems(), CWindowMaskerJob::x_CreateProjectItems(), CHgvsProtIrepReader::x_CreateProteinSubstVarref(), CPssmEngine::x_CreatePssmFromCDD(), CPssmEngine::x_CreatePssmFromFreqRatios(), CPssmEngine::x_CreatePssmFromMsa(), CGBDataLoader::x_CreateReader(), CGBDataLoader::x_CreateReaders(), CElementaryMatching::x_CreateRemapData(), CDumpASNIndex::x_CreateRootDir(), CNaSeqlocHelper::x_CreateSeqloc(), CHgvsNaIrepReader::x_CreateSubstVarref(), CUpdateMultipleSeq_Input::x_CreateUpdateSeqInputForUnitTest(), CHgvsProtIrepReader::x_CreateVarref(), CHgvsNaIrepReader::x_CreateVarref(), CHgvsProtIrepReader::x_CreateVarrefFromLoc(), CGBDataLoader::x_CreateWriter(), CGBDataLoader::x_CreateWriters(), COrfSearchJob::x_DecodeGeneticCode(), CNcbiEncrypt::x_Decrypt(), CAsn2FlatApp::x_DeduceTarget(), CBlastTabular::x_Deserialize(), CNetStorageHandler::x_DetectMetaDBNeedOnCreate(), CNetStorageHandler::x_DetectMetaDBNeedUpdate(), CSplicedAligner32::x_DoBackTrace(), CBandAligner::x_DoBackTrace(), CMMAligner::x_DoSubmatrix(), CSeq_annot_Info::x_DoUpdate(), CBlastSeqVectorFromCSeq_data::x_Encoding_CSeq_data2CSeqUtil(), CSyncQueue< Type, Container, Traits >::x_Erase(), CArgDependencyGroup::x_Evaluate(), CSeqDBAliasNode::x_ExpandAliases(), CMemoryFileMap::x_Extend(), CAlnMix::x_ExtendDSWithWidths(), CMMAligner::x_ExtendSubpath(), CWriteDB_Impl::x_ExtractDeflines(), CRowReaderStream_IANA_TSV::x_ExtractNames(), CPsiBlastInputClustalW::x_ExtractQueryFromMsa(), CBlastFastaInputSource::x_FastaToSeqLoc(), CCleanupApp::x_FeatureOptionsValid(), CEutilsClient::x_Fetch(), CBinsJob::x_FetchGraphs(), CAsnSubCacheCreateApplication::x_FetchMissingBlobs(), CMatchSetup::x_FetchNucSeqRef(), CSeqVector_CI::x_FillCache(), CMakeProfileDBApp::x_FillInRPSDbParameters(), CSDB_ConnectionParam::x_FillParamMap(), CCmdLineBlastXML2ReportData::x_FillScoreMatrix(), CCmdLineBlastXMLReportData::x_FillScoreMatrix(), CSeqDBImpl::x_FillSeqBuffer(), CThreadPoolEngine::x_Find(), CAlnMap::x_FindClosestSeqPos(), CMultiAligner::x_FindConstraints(), CMultiAligner::x_FindDomainHits(), CMaskInfoRegistry::x_FindNextValidIdWithinRange(), CMultiAligner::x_FindPatternHits(), CNetStorageHandler::x_FindProcessor(), CMultiAligner::x_FindRPSHits(), CDense_seg::x_FindSegment(), CSeqMap::x_FindSegment(), CDBAPI_CacheIWriter::x_Flush(), CSeq_loc_Mapper_Base::x_ForceSeqTypes(), CCIGAR_Formatter::x_FormatAlignmentRows(), CCIGAR_Formatter::x_FormatLine(), CSequenceUpdater::x_FormNewAlignment(), CUpdateMultipleSeq_Input::x_FoundMatchesForUpdates(), CAlignFilter::x_FuncCall(), CFlatGatherer::x_GatherBioseq(), CReferenceItem::x_GatherInfo(), CGeneFileWriter::x_Gene2Accn_ParseLine(), CGeneFileWriter::x_Gene2Accn_ProcessFile(), CGeneFileWriter::x_Gene2PM_ParseLine(), CGeneFileWriter::x_Gene2PM_ProcessFile(), CGeneInfoFileReader::x_GeneIdToGi(), CGeneInfoFileReader::x_GeneIdToOffset(), CGeneFileWriter::x_GeneInfo_ParseLine(), CGeneFileWriter::x_GeneInfo_ProcessFile(), CProteinMatchApp::x_GenerateMatchTable(), CEutilsClient::x_Get(), CDisplaySeqalign::x_GetAlnVecForSeqalign(), CSeqDBVol::x_GetAmbChar(), CSeqDBVol::x_GetAmbigSeq(), CSeq_feat_Handle::x_GetAnnotObject_Info(), CSeq_feat_Handle::x_GetAnnotObject_InfoAny(), CCgiContext::x_GetApp(), CBlastServices::x_GetAvailableDatabases(), CPhyTreeFormatter::x_GetBioNode(), ITSE_Assigner::x_GetBioseq(), CSeqMap_CI::x_GetBioseq(), CTSE_Info::x_GetBioseq(), CScope_Impl::x_GetBioseq_Lock(), ITSE_Assigner::x_GetBioseq_set(), CTSE_Info::x_GetBioseq_set(), CScope_Impl::x_GetBioseq_set_Lock(), CProteinMatchApp::x_GetBlastArgs(), SNSCommandArguments::x_GetBooleanValue(), CNaSeqlocHelper::x_GetCDS(), CAlnMap::x_GetChunks(), CFastaOstreamEx::x_GetCodeBreak(), CPhyloTreeScheme::x_GetColorMonoIdx(), CCreateGeneModelTask::x_GetCommand(), CMuscleToolJob::x_GetCommandLine(), CMafftToolJob::x_GetCommandLine(), CKalignToolJob::x_GetCommandLine(), CClustalwToolJob::x_GetCommandLine(), CClustalOmegaToolJob::x_GetCommandLine(), CProteinMatchApp::x_GetCompareAnnotsArgs(), CNetScheduleControl::x_GetConnectionArgs(), CPubseq2Reader::x_GetCurrentResult(), CSeq_align_Mapper_Base::x_GetDstDendiag(), CSeq_align_Mapper_Base::x_GetDstDenseg(), CSeq_align_Mapper_Base::x_GetDstExon(), CSeq_align_Mapper_Base::x_GetDstSparse(), CImageIO::x_GetHandler(), CSeqDBImpl::x_GetHdr(), CGC_Assembly::x_GetId(), x_GetId(), CAsnCache_DataLoader::x_GetIndex(), CFeatTree::x_GetInfo(), variation_ref::CHgvsParser::x_GetInstLength(), variation::CHgvsParser::x_GetInstLength(), CGridRPCBaseClient< CAsnBinCompressed >::x_GetJobById(), CSDB_Decryptor::x_GetKey(), CAsn2FlatApp::x_GetLocation(), CScoreBuilderBase::x_GetMatrixCounts(), CAsnRetrieveJob::x_GetMemberObject(), CMemoryFileMap::x_GetMemoryFileSegment(), CBasicManifest_CI< TString >::x_GetNextValue(), CMatchSetup::x_GetNucSeqIdsFromCDSs(), CSeqMap::x_GetObject(), CProjectStorage::x_GetOutputStream(), CSeqVector::x_GetPacked2naSeqData(), CSDB_ConnectionParam::x_GetPassword(), CScore_BlastRatio::x_GetPerfectScore(), CVariationUtilities::x_GetRefAlleleFromVP(), CSeqMap::x_GetRefSeqid(), CRemoteBlast::x_GetRequestInfoFromFile(), CRemoteBlast::x_GetRequestInfoFromRID(), CProteinMatchApp::x_GetRootTypeInfo(), CSeqMap::x_GetSegmentException(), CSeq_align_Handle::x_GetSeq_align(), CScope_Impl::x_GetSeq_annot_Lock(), CSeqMap::x_GetSeq_data(), CScope_Impl::x_GetSeq_entry_Lock(), CSeq_graph_Handle::x_GetSeq_graph(), CBlastHitMatrixCGIApplication::x_GetSeqAnnot(), CSeqDBImpl::x_GetSeqGI(), CAlnMap::x_GetSeqLeftSeg(), CSeqDBImpl::x_GetSeqLength(), CAlnMap::x_GetSeqRightSeg(), CMakeProfileDBApp::x_GetSMPFilenames(), CSeq_feat_Handle::x_GetSNP_Info(), CSeq_feat_Handle::x_GetSNP_InfoAny(), CMacroFunction_MakeLocation::x_GetStrand(), CConfig::x_GetString(), CRemoteBlast::x_GetSubjects(), CAnnot_Collector::x_GetTSE_Info(), CScope_Impl::x_GetTSE_Lock(), CGeneInfoFileReader::x_GiToGeneId(), CGeneInfoFileReader::x_GiToOffset(), CPssmEngine::x_GuardProteinQuery(), CCompressedFile::x_GuessFormatNetwork(), CFeatureGenerator::SImplementation::x_HandleCdsExceptions(), CMacroFunction_MakeLocation::x_HandleNegativeCoordinates(), CNcbiApplication::x_HonorStandardSettings(), CAlnMixSequences::x_IdentifyAlnMixSeq(), CVariant::x_Inapplicable_Method(), variation::CVariationUtil::x_InferNAfromAA(), CFileManifest::x_Init(), CBlastRPSInfo::x_Init(), CMinHashFile::x_Init(), CSeq_align_Mapper_Base::x_Init(), CSafeStatic< CTls< TValue >, CStaticTls_Callbacks< TValue > >::x_Init(), CRemoteBlast::x_Init(), CSeq_id::x_Init(), CTimeSpan::x_Init(), CFileLock::x_Init(), CSeq_loc_Mapper_Base::x_InitAlign(), CPhyTreeCalc::x_InitAlignDS(), IEditMacroFunction::x_InitCall(), CCmdLineBlastXML2ReportData::x_InitCommon(), CPubseq2Reader::x_InitConnection(), CId2Reader::x_InitConnection(), CHttpRequest::x_InitConnection(), CCmdLineBlastXML2ReportData::x_InitDB(), CElementaryMatching::x_InitFilteringVector(), CSeq_loc_Mapper::x_InitGCSequence(), CBlastHitMatrix::x_InitGraphics(), CSeq_annot_CI::x_Initialize(), CBioseq_CI::x_Initialize(), CScoreBuilder::x_Initialize(), CAnnot_Collector::x_Initialize(), CSeq_loc_Mapper_Base::x_InitializeAlign(), CSeq_loc_Mapper_Base::x_InitializeLocs(), CPssmEngine::x_InitializeQueryInfo(), CPssmEngine::x_InitializeScoreBlock(), CProteinMatchApp::x_InitNucProtSetMatch(), CProteinMatchApp::x_InitNucSeqMatch(), CProteinMatchApp::x_InitObjectIStream(), CProteinMatchApp::x_InitObjectOStream(), CMultiAlignerOptions::x_InitParams(), CMakeProfileDBApp::x_InitProgramParameters(), CRemoteBlast::x_InitQueries(), CMakeProfileDBApp::x_InitRPSDbInfo(), CBlastDBCmdApp::x_InitSearchRequest(), CPsiBl2Seq::x_InitSubject(), CCmdLineBlastXML2ReportData::x_InitSubjects(), CTaxFormat::x_InitTaxClient(), CPhyTreeFormatter::x_InitTreeFeatures(), CCache< TKey, TValue, THandler, TLock, TSize >::x_InsertElement(), variation_ref::CHgvsParser::x_InstToString(), CMacroParser::x_InternalParseWhere(), CNetServProtoParserBase::x_IsArgumentMatch(), CConservationScoringMethod::x_IsConserved(), CCleanupApp::x_KOptionsValid(), CBlastPrelimSearch::x_LaunchMultiThreadedSearch(), CEutilsClient::x_Link(), CEutilsClient::x_LinkOut(), CMultiAligner::x_LoadBlockBoundaries(), x_LoadConstraints(), CFileLoader::x_LoadFile(), CGBProjectTool::x_LoadGeneralData(), CNcbiEncrypt::x_LoadKeys(), CCassBlobOp::x_LoadKeysScheduleNext(), CPkgManager::x_LoadPackage(), x_LoadPatterns(), CSplign::x_LoadSequence(), CAlnPrinterFixture::x_LoadSequences(), CSourceQualifiersReader::x_LoadSourceQualifiers(), CTaxFormat::x_LoadTaxTree(), CHTMLPage::x_LoadTemplate(), CHTMLPage::x_LoadTemplateLib(), CDataSource::x_LockTSE(), CSplignApp::x_LogCompartmentStatus(), CMultiAligner::x_MakeClusterResidueFrequencies(), CSeqDBIsam::x_MakeFilenames(), CVDBGraphSeqIterator::x_MakeGraph(), CObjMgrFree_QueryFactory::x_MakeLocalQueryData(), CObjMgrFree_QueryFactory::x_MakeRemoteQueryData(), x_MakeRemove(), x_MakeReplace(), CVDBGraphSeqIterator::x_MakeTable(), CDataSource::x_Map(), CFeatureGenerator::SImplementation::x_MapFeature(), CGeneInfoFileReader::x_MapMemFiles(), CSeq_loc_Mapper_Base::x_MapNextRange(), CSeq_loc_Mapper_Base::x_MapSeq_loc(), CAlignFilter::x_Match(), CUpdateMultipleSeq_Input::x_MatchIdsAndAddUpdateToScope(), CAnnot_Collector::x_MatchLimitObject(), CAlnMixMerger::x_Merge(), CMultiAligner::x_MultiAlignClusters(), CSeqVector_CI::x_NextCacheSeg(), CDeadline::x_Now(), CAppJobDispatcher::x_OnJobStateChanged(), CAppTaskService::x_OnTaskCanceled(), CAppTaskService::x_OnWakeUpSignal(), CSeqDBGiMask::x_Open(), CArg_Ios::x_Open(), CMemoryFileMap::x_Open(), CSeqDBVol::x_OpenAllColumns(), CProcessor_ID2::x_OpenDataStream(), CSeq_loc_Mapper_Base::x_OptimizeSeq_loc(), CCache< TKey, TValue, THandler, TLock, TSize >::x_PackElementIndex(), CMacroParser::x_ParseBody(), CMacroParser::x_ParseChoice(), CMacroParser::x_ParseDo(), CMacroParser::x_ParseFunctionCall(), CGC_Assembly_Parser::x_ParseGCSequence(), CMacroParser::x_ParseNumericChoiceValue(), CMacroParser::x_ParseNumericParameterValue(), CMacroParser::x_ParseNumericVarValue(), CMacroParser::x_ParseScript(), CEutilsClient::x_ParseSearchResults(), x_ParseSNP_Info(), CMacroParser::x_ParseVariables(), CBlastTabular::x_PartialDeserialize(), CArgDescriptions::x_PostCheck(), CArgDescriptions::x_PreCheck(), CNSTDatabase::x_PreCheckConnection(), CFindOverlapJob::x_PrepareAligner(), CAlnMultiCGIApplication::x_PreProcess(), CSeqVector_CI::x_PrevCacheSeg(), CBlastDB_SeqFormatter::x_Print(), CMultiAlnPrinter::x_PrintNexus(), CHTMLPage::x_PrintTemplate(), CExportStrategy::x_Process_BlastOptions(), CPrimeCacheApplication::x_Process_Fasta(), CPrimeCacheApplication::x_Process_Ids(), CExportStrategy::x_Process_Pssm(), CExportStrategy::x_Process_Query(), CExportStrategy::x_Process_SearchDb(), CExportStrategy::x_Process_Subject(), CNetStorageHandler::x_ProcessAckAlert(), CCddInputData::x_ProcessAlignments(), CProSplignJob::x_ProcessCompartment(), CNetStorageHandler::x_ProcessCreate(), CNetStorageHandler::x_ProcessDelAttr(), CNetStorageHandler::x_ProcessDelete(), CBlastDBCmdApp::x_ProcessEntry(), CDiscRepApp::x_ProcessFile(), CNetStorageHandler::x_ProcessGetAttr(), CNetStorageHandler::x_ProcessGetAttrList(), CNetStorageHandler::x_ProcessGetClientObjects(), CNetStorageHandler::x_ProcessGetUserObjects(), CNetStorageHandler::x_ProcessHello(), CMakeBlastDBApp::x_ProcessInputData(), CNetStorageHandler::x_ProcessLockFTPath(), CMakeBlastDBApp::x_ProcessMaskData(), CNetScheduleHandler::x_ProcessMsgRequest(), CCleanupApp::x_ProcessOneDirectory(), CCleanupApp::x_ProcessOneFile(), CBlastOptionsBuilder::x_ProcessOneOption(), CBlastKmer::x_ProcessQuery(), CNetStorageHandler::x_ProcessRead(), CNetStorageHandler::x_ProcessReconfigure(), CNetScheduleHandler::x_ProcessReloadConfig(), CNetStorageHandler::x_ProcessRelocate(), CBlastDBCmdApp::x_ProcessSearchType(), CXcompareAnnotsApplication::x_ProcessSeqAlignSetFromFile(), CCleanupApp::x_ProcessSeqSubmit(), CNetStorageHandler::x_ProcessSetAttr(), CNetStorageHandler::x_ProcessSetExpTime(), CNetStorageHandler::x_ProcessShutdown(), CNetScheduleHandler::x_ProcessStatistics(), CCgiApplication::x_ProcessVersionRequest(), CNetStorageHandler::x_ProcessWrite(), variation_ref::CVariationUtil::x_ProtToPrecursor(), CWriteDB_Impl::x_Publish(), CSeqMap_CI::x_Push(), CStreamUtils::x_Pushback(), CSeq_loc_Mapper_Base::x_PushMappedRange(), CAlignFilter::x_Query_Op(), CSeq_annot_SNP_Info_Reader::x_Read(), CSeqDBAliasSets::x_ReadAliasSetFile(), CProteinMatchApp::x_ReadAlignmentFile(), CMultiAlignerFixture::x_ReadAlignments(), CTar::x_ReadAndProcess(), CProteinMatchApp::x_ReadAnnotFile(), CPsiBlastInputClustalW::x_ReadAsciiMsa(), CWigBufferedLineReader::x_ReadBuffer(), CBufferedLineReader::x_ReadBuffer(), SErrorEmulatorParameter::x_ReadCommon(), CProcessor_ID2::x_ReadData(), CObjectIStreamJson::x_ReadDataAndCheck(), CShortReadFastaInputSource::x_ReadFastaOrFastq(), CShortReadFastaInputSource::x_ReadFastc(), CShortReadFastaInputSource::x_ReadFastqOneSeq(), CSeqDBColumn::x_ReadFields(), CSeqDBGiMask::x_ReadFields(), CUpdateMultipleSeq_Input::x_ReadFromStream(), CUpdateSeq_Input::x_ReadFromStream(), CShortReadFastaInputSource::x_ReadFromTwoFiles(), CAppHitFilter::x_ReadInputHits(), CSeqDBColumn::x_ReadMetaData(), CASN1InputSourceOMF::x_ReadOneSeq(), CBlastDbBlob::x_ReadRaw(), CMultiAlignerFixture::x_ReadRpsArchive(), CMultiAlignerFixture::x_ReadSequences(), CTransmissionReader::x_ReadStart(), CBlastDbBlob::x_ReadString(), CUpdateSeq_Input::x_ReadUpdateSeq_ASN(), CUpdateSeq_Input::x_ReadUpdateSeq_Fasta(), CUpdateMultipleSeq_Input::x_ReadUpdateSeqs_ASN(), CUpdateMultipleSeq_Input::x_ReadUpdateSeqs_Fasta(), CBlastDbBlob::x_ReadVarInt(), CMultiAligner::x_RealignBlocks(), CSeq_feat_EditHandle::x_RealRemove(), CSeq_feat_EditHandle::x_RealReplace(), CId2Reader::x_ReceiveReply(), CObjectManager::x_RegisterLoader(), CProteinMatchApp::x_RelabelNucSeq(), CRemoteSeqSearch::x_RemoteBlast(), CRemotePssmSearch::x_RemoteBlast(), CSequenceUpdater::x_ReplaceSequence(), CSeqDBAliasNode::x_ResolveNames(), CSeqMap::x_ResolveSegmentLength(), CSeqMap::x_ResolveSegmentPosition(), CWorkspaceAutoSaver::x_RestoreWorkspace(), CSeqDBImpl::x_RetSeqBuffer(), CMakeProfileDBApp::x_RPS_DbClose(), CMakeProfileDBApp::x_RPSAddFirstSequence(), CMakeProfileDBApp::x_RPSUpdateLookup(), CMakeProfileDBApp::x_RPSUpdatePSSM(), CMakeProfileDBApp::x_RPSUpdateStatistics(), CFlatFileRetrieveJob::x_Run(), CMakeProfileDBApp::x_Run(), CNWAligner::x_Run(), CMultiAligner::x_Run(), CSplign::x_Run(), CInstancedAligner::x_RunAligner(), CSplign::x_RunOnCompartment(), CAppNWA::x_RunOnPair(), CGBDocument::x_SaveFile(), CWorkspaceAutoSaver::x_SaveWorkspace(), CElementaryMatching::x_Search(), CEutilsClient::x_Search(), CAnnot_Collector::x_SearchAll(), CAnnot_Collector::x_SearchLoc(), CAnnot_Collector::x_SearchMapped(), CBlastKmer::x_SearchMultipleQueries(), CSeqDBIsam::x_SearchNegativeMulti(), CSeqDBIsam::x_SearchNegativeMultiSeq(), CAnnot_Collector::x_SearchSegments(), CPubseq2Reader::x_SendPacket(), CRemoteBlast::x_SendRequest(), variation::CHgvsParser::x_SeqLiteralToStr(), CTSE_Info::x_SetBioseq_setId(), CTSE_Info::x_SetBioseqIds(), CSeqMap::x_SetChunk(), CPhyloTreeScheme::x_SetColorMono(), CFeatureGenerator::SImplementation::x_SetComment(), CPubseq2Reader::x_SetCurrentResult(), CMedia::x_SetDimensions(), CMultiAligner::x_SetDomainHits(), CSeqDBExtFile::x_SetFileType(), CRequestContext::x_SetHitID(), CMacroFunction_ApplyFeature::x_SetLocation(), CRemoteBlast::x_SetMaskingLocationsForQueries(), CSeqMap::x_SetObject(), CThreadPool_Task::x_SetOwner(), CSplign::x_SetPattern(), CVariationUtilities::x_SetReference(), CMultiAligner::x_SetScoreMatrix(), CSeqMap::x_SetSegmentGap(), CSeqMap::x_SetSeq_data(), CSeqMap::x_SetSubSeqMap(), CTime::x_SetTime(), CSplignApp::x_SetupBlastOptions(), ITreeMacroFunction::x_SetUserObjects(), CVariationNormalization_base< T >::x_Shift(), x_SingleRange(), CPrimeCacheApplication::x_SplitAndCacheSeqEntry(), CSeqMap::x_StartEditing(), CAppJobDispatcher::x_StartJob(), CNlmZipReader::x_StartPlain(), CMergeVolumes::x_StoreMerger(), CSeqDBVol::x_StringToOids(), CEutilsClient::x_Summary(), CNWAligner::x_SWDoBackTrace(), CAlignFilter::x_TermValue(), CFormatGuess::x_TestFormat(), CFormatGuess::x_TestInput(), CSequenceDataTester::x_TestSingleSequence_Local(), CSQLITE3_Statement::x_Throw(), CDll::x_ThrowException(), CPsiBlastIterationState::x_ThrowExceptionOnLogicError(), CFlatFileConfig::x_ThrowHaltNow(), CTableFieldHandle_Base::x_ThrowUnsetValue(), CSeqTableColumnInfo::x_ThrowUnsetValue(), CBlastOptionsRemote::x_Throwx(), CBlastOptions::x_Throwx(), CFilteringArgs::x_TokenizeFilteringArgs(), CSeqDBIsam::x_TranslateGiList(), CFastaOstreamEx::x_TrimLocation(), CIdResolver::x_TryProcessLRG(), CMakeProfileDBApp::x_UpdateCobalt(), CQueue::x_UpdateDB_ProvideJobNoLock(), CQueue::x_UpdateDB_PutResultNoLock(), CMakeProfileDBApp::x_UpdateDelta(), CSeq_loc::x_UpdateId(), CMagicBlast::x_Validate(), CPsiBlastImpl::x_Validate(), CDeltaBlast::x_Validate(), CHttpCookie::x_Validate(), CBlastSearchQuery::x_Validate(), CPubseqGatewayApp::x_ValidateArgs(), CProjectStorage::x_ValidateAsnSerialFormat(), CMakeProfileDBApp::x_ValidateCd(), CProjectStorage::x_ValidateCompressionFormat(), CQueueDataBase::x_ValidateConfiguration(), CMultiAligner::x_ValidateInputMSAs(), CSearchDatabase::x_ValidateMaskingAlgorithm(), CBlastInputReader::x_ValidateMoleculeType(), CCddInputData::x_ValidateMsa(), CMultiAligner::x_ValidateQueries(), CPsiBlastInputClustalW::x_ValidateQueryInMsa(), CProjectStorage::x_ValidateSerialFormat(), CMultiAligner::x_ValidateUserHits(), CNetStorageHandler::x_ValidateWriteMetaDBAccess(), CMemoryFileSegment::x_Verify(), CMemoryFile::x_Verify(), CVariant::x_Verify_AssignType(), CSeqDBGiMask::x_VerifyAlgorithmId(), CBlastQueryFilteredFrames::x_VerifyFrame(), CMakeBlastDBApp::x_VerifyInputFilesType(), CFeatTree::x_VerifyLinkedToRoot(), CSeqGraphicConfig::x_VerifySettings(), CConditionVariable::x_WaitForSignal(), CMakeProfileDBApp::x_WrapUpDelta(), CProteinMatchApp::x_WriteEntry(), CVcfWriter::x_WriteFeature(), CProjectFileWriter::x_WriteFile(), CWriteDB_IsamIndex::x_WriteHeader(), CProteinMatchApp::x_WriteMatchTable(), CFastaOstream::x_WriteSeqIds(), CFastaOstreamEx::x_WriteTranslatedCds(), CCleanupApp::x_XOptionsValid(), CSeqSubSplitter::xFlattenSeqEntry(), CSeqSubSplitter::xInitInputStream(), CAnnotWriterApp::xInitInputStream(), CSeqSubSplitter::xInitOutputStream(), CAnnotWriterApp::xInitOutputStream(), CAnnotWriterApp::xInitWriter(), CAnnotWriterApp::xTryProcessInputFile(), CSeqSubSplitter::xTryProcessSeqSubmit(), CBedWriter::xWriteAnnotFeatureTable(), CBedWriter::xWriteAnnotThreeFeatData(), CGff3Writer::xWriteRecord(), CBedGraphWriter::xWriteSingleFeature(), and CTime::YearWeekNumber().

#define NCBI_THROW2 (   exception_class,
  err_code,
  message,
  extra 
)    throw NCBI_EXCEPTION2(exception_class, err_code, message, extra)

Throw exception with extra parameter.

Required to throw exceptions with one additional parameter (e.g. positional information for CParseException).

Definition at line 1623 of file ncbiexpt.hpp.

Referenced by CRR_Util::ActionToRowType(), CCgiCookies::Add(), CCompoundRegistry::Add(), CCompoundRWRegistry::Add(), CStrTokenizeBase::Advance(), AgpRead(), CFastaReader::AssembleSeq(), CFastaReader::AssignMolType(), CBamAlignIterator::CBamAlignIterator(), CBamFileAlign::CBamFileAlign(), CBamMgr::CBamMgr(), CBamRefSeqIterator::CBamRefSeqIterator(), CCgiCookie::CCgiCookie(), CExprValue::CExprValue(), CUtf8::CharToSymbol(), CRR_Util::CheckExistanceAndPermissions(), CBioTreeAttrReader::CheckLineReader(), CheckStreamState(), CKConfig::CKConfig(), CKDBManager::CKDBManager(), CKNameList::CKNameList(), CKNSManager::CKNSManager(), CKTable::CKTable(), CVDBCursor::CloseRow(), CKConfig::Commit(), NStr::CParse(), CRowReader< TTraits >::CRowReader(), CVDBTable::CVDBTable(), CVFSManager::CVFSManager(), CVResolver::CVResolver(), CExtraDecoder::Decode(), CUtf8::DecodeFirst(), CUtf8::DecodeNext(), CVDBMgr::DeleteCacheOlderThan(), NStr::DoubleToString_Ecvt(), NStr::DoubleToStringPosix(), CUtf8::EncodingToString(), CRowReader< TTraits >::end(), TSL::CTcpWorker< HST::CHttpProto< P >, HST::CHttpConnection< P >, HST::CHttpDaemon< P > >::Execute(), CGlBitmapFont::FromString(), CRR_Field< TTraits >::Get(), CLDS2_DataLoader::GetBlobById(), CVDBMgr::GetCacheRoot(), CKMDataNode::GetData(), CDate_std::GetDate(), IRegistry::GetEncryptedString(), CRR_MetaInfo< TTraits >::GetFieldIndexByName(), CRR_Util::GetFieldValueConverted(), CBamFileAlign::GetFlags(), CBamDb::GetHeaderText(), CBamRefSeqIterator::GetLength(), CBamAlignIterator::GetMapQuality(), CGBDataLoader::GetNamedAnnotAccessions(), CWGSDataLoader_Impl::GetRecords(), CBamFileAlign::GetRefSeqIndex(), CBamAlignIterator::SAADBImpl::GetRefSeqPos(), CAlnReader::GetSeqAlign(), CAlnReader::GetSeqEntry(), CUtf8::GetSymbolCount(), CResolvedTypeSet::GetType(), CKMDataNode::GetUint8(), SCigarAlignment::GuessFormat(), CHTMLHelper::HTMLDecode(), NStr::HtmlDecode(), CVDBCursor::Init(), CBamAlignIterator::IsFirstInPair(), CBamAlignIterator::IsPaired(), CBamAlignIterator::IsSecondInPair(), CTempStringList::Join(), CBamRefSeqIterator::operator++(), CBamAlignIterator::operator++(), CRowReader< TTraits >::CRowIterator::operator==(), CRR_Row< TTraits >::operator[](), CFastaReader::ParseDataLine(), CFastaDeflineReader::ParseDefline(), NStr::ParseEscapes(), CJsonParser::ParseInt(), NStr::ParseQuoted(), CJsonParser::ParseValue(), ParseVersionString(), CBioTreeAttrReader::Read(), CAlnReader::Read(), CPhrapReader::Read(), CFastaReader::ReadAlignedSet(), CPhrap_Seq::ReadData(), CPhrap_Read::ReadDS(), CFastaReader::ReadOneSeq(), CPhrap_Contig::ReadReadLocation(), CPhrap_Read::ReadTag(), CPhrap_Contig::ReadTag(), CPhrap_Sequence::ReadTag(), CCompoundRegistry::Remove(), CCompoundRWRegistry::Remove(), CEnvironmentRegistry::RemoveMapper(), NStr::Replace(), CExprParser::ReportError(), TSL::CTcpDaemon< HST::CHttpProto< P >, HST::CHttpConnection< P >, HST::CHttpDaemon< P > >::Run(), CSraRef< VFSManager >::s_AddRef(), CBamRef< VFSManager >::s_AddRef(), s_ConvertVersionInfo(), s_EndOfTag(), s_FindAttribute(), s_StringToDouble(), CVDBMgr::SetCacheRoot(), CRowReader< TTraits >::SetDataSource(), CUrlArgs_Parser::SetQueryString(), CUrl::SetUrl(), TSL::CTcpWorkersList< HST::CHttpProto< P >, HST::CHttpConnection< P >, HST::CHttpDaemon< P > >::Start(), NStr::StringToBool(), NStr::StringToUInt8_DataSize(), sx_GetVPath(), CUtf8::SymbolToChar(), CVPath::ToString(), CKMDataNode::TryToGetData(), NStr::UInt8ToString_DataSize(), NStr::Unquote(), CPIDGuard::UpdatePID(), CRowReader< TTraits >::Validate(), CRR_Util::ValidateBasicTypeFieldValue(), CCgiCookie::Write(), CPhrap_Contig::x_AddBaseSegFeats(), CPhrapReader::x_AddContig(), CPhrapReader::x_AddRead(), CPhrap_Read::x_AddTagFeats(), CUtf8::x_Append(), CUtf8::x_AsBasicString(), CRowReader< TTraits >::CRowIterator::x_CheckAdvancing(), CRowReader< TTraits >::CRowIterator::x_CheckDereferencing(), CCgiCookie::x_CheckField(), CRowReader< TTraits >::CRowIterator::x_CheckFieldAccess(), CPhrapReader::x_DetectFormatVersion(), CRR_Row< TTraits >::x_GetFieldIndex(), CPhrapReader::x_GetNewTag(), CSplignApp::x_GetNextComp(), CPhrapReader::x_GetOldTag(), CGBDataLoader::x_GetRecords(), CRowReader< TTraits >::x_GetRowData(), CRR_Field< TTraits >::x_GetStringValue(), CKMetadata::x_Init(), CSraMgr::x_Init(), CVDBMgr::x_Init(), CVFSManager::x_InitNew(), CLDS2_DataLoader::x_LoadBlobs(), CRowReader< TTraits >::x_OnEvent(), CFastaDeflineReader::x_ProcessIDs(), CCgiRequest::x_ProcessInputStream(), IRWRegistry::x_Read(), CPhrapReader::x_ReadContig(), CCgiEntryReaderContext::x_ReadMultipartHeaders(), CRowReader< TTraits >::x_ReadNextRow(), CPhrapReader::x_ReadOldFormatData(), CPhrapReader::x_ReadOldSequence(), CFastaReader::x_ReadSegSet(), CPhrapReader::x_ReadTag(), CPhrapReader::x_ReadWA(), NStr::x_ReportLimitsError(), CUtf8::x_Validate(), CMultiReader::xGetAnnotLoader(), CMultiReaderApp::xPostProcessAnnot(), CMultiReaderApp::xProcessAgp(), CMultiReaderApp::xProcessDefault(), CMultiReader::xReadFasta(), and CMultiReader::xReadFile().

#define NCBI_THROW_FMT (   exception_class,
  err_code,
  message 
)    NCBI_THROW(exception_class, err_code, FORMAT(message))

The same as NCBI_THROW but with message processed as output to ostream.

Definition at line 562 of file ncbiexpt.hpp.

Referenced by CSeq_loc::Add(), AddZoomLevel(), CNetCacheKey::Assign(), CIStreamBuffer::BadNumber(), INetStorageObjectState::CancelRelocate(), CSeq_loc::ChangeToPackedInt(), NAutomation::SCommandImpl::Check(), NAutomation::CAutomationObject::CheckCall(), SWorkerNodeJobContextImpl::CheckIfJobIsLost(), CNetScheduleKey::CNetScheduleKey(), CombineWithZoomLevel(), SNetStorageRPC::Create(), CRemoteAppLauncher::CRemoteAppLauncher(), CSeqTableSetAnyObjField::CSeqTableSetAnyObjField(), CSNPDbSeqIterator::CSNPDbSeqIterator(), CSNPDbTrackIterator::CSNPDbTrackIterator(), CStringOrBlobStorageReader::CStringOrBlobStorageReader(), CThreadPool_Controller::CThreadPool_Controller(), CWGSDataLoader_Impl::CWGSDataLoader_Impl(), SNetServiceImpl::DiscoverServersIfNeeded(), SNetStorageObjectOState::Eof(), NDirectNetStorageImpl::CRWNotFound::Eof(), SSimpleCommandImpl::Exec(), NAutomation::CArgument::Exec(), SNetCacheAPIImpl::ExecMirrorAware(), NAutomation::CAutomationObject::ExecNew(), NAutomation::SNetCacheBlob::ExecRead(), NAutomation::CAutomationProc::ExecWhatIs(), SNetStorageObjectIoState::Exists(), SIDUnpacking::ExtractCID(), SIDUnpacking::ExtractNumber(), SIDUnpacking::ExtractPort(), SIDUnpacking::ExtractString(), SIDUnpacking::ExtractUint4(), SNetStorage_NetCacheBlob::FileTrack_Path(), SNetStorageObjectIoState::FileTrack_Path(), NDirectNetStorageImpl::CNotFound::FileTrack_Path(), NDirectNetStorageImpl::CNetCache::FileTrack_Path(), SNetServiceImpl::FindServerAndExec(), SNetStorageObjectIState::Flush(), CProcess::Fork(), CSNPBlobId::FromString(), CWGSBlobId::FromString(), CCSRABlobId::FromString(), g_NetService_gethostbyname(), g_NetService_gethostname(), CScope_Impl::GetAccVer(), SBamIndexRefIndex::GetAlnOverStarts(), SNetStorage_NetCacheBlob::GetAttribute(), SNetStorageObjectIoState::GetAttribute(), SNetStorage_NetCacheBlob::GetAttributeList(), SNetStorageObjectIoState::GetAttributeList(), CJsonNode::GetByKey(), CBamAlignIterator::GetCIGARAlignment(), CBamAlignIterator::GetCIGARRefSize(), CBamAlignIterator::GetCIGARShortSize(), CClassTypeInfoBase::GetClassInfoByName(), CSeqTableInfo::GetColumn(), SNetStorage::SConfig::GetDefaultStorage(), CSeq_loc_CI_Impl::GetEquivSet(), CScope_Impl::GetGi(), CWGSSeqIterator::GetId(), CWGSScaffoldIterator::GetId(), CWGSProteinIterator::GetId(), GetIdField(), CScope_Impl::GetIds(), SNetStorageObjectIoState::GetInfo(), CWGSSeqIterator::GetLocFeatRowIdRange(), CWGSScaffoldIterator::GetLocFeatRowIdRange(), CWGSProteinIterator::GetLocFeatRowIdRange(), CCSraAlignIterator::GetMatchAlign(), CBamAlignIterator::GetMatchAlign(), CSeqVector::GetPackedSeqData(), SFileTrackAPI::GetPath(), CReadDispatcher::GetProcessor(), GetProteinName(), SUrl::GetRoot(), CBamRawAlignIterator::GetSegments(), CProcessor_ID1::GetSeq_entry(), CWGSScaffoldIterator::GetSeq_inst(), CSeqVector_CI::GetSeqData(), CScope_Impl::GetSequenceHash(), CScope_Impl::GetSequenceHashes(), CScope_Impl::GetSequenceLength(), CScope_Impl::GetSequenceState(), CScope_Impl::GetSequenceType(), SNetStorageObjectIoState::GetSize(), CBamVDBFile::GetSize(), NDirectNetStorageImpl::CNotFound::GetSize(), CSeq_loc::GetStart(), CGBRequestStatistics::GetStatistics(), CSeq_loc::GetStop(), CSeq_loc::GetStrand(), CScope_Impl::GetTaxId(), INetStorageObjectState::GetUserInfo(), NDirectNetStorageImpl::CNotFound::GetUserInfo(), SAnnotSelector::IncludeNamedAnnotAccession(), CRemoteAppJobFactory::Init(), CCgi2RCgiApp::Init(), CRemoteCgiJobFactory::Init(), SNetServiceImpl::Init(), SNetServiceImpl::IterateUntilExecOK(), CCSRARefSeqInfo::LoadAnnotPileupChunk(), CProcessor_AnnotInfo::LoadBlob(), CNetScheduleJobSerializer::LoadJobInput(), SBatchSubmitRecord::LoadNextRecord(), INetStorageObjectState::Locator(), CSeq_loc_CI_Impl::MakeBondA(), CSeq_loc_CI_Impl::MakeBondAB(), CSeq_loc_CI_Impl::MakeBondB(), CBamIndex::MakeEstimatedCoverageAnnot(), CCSraAlignIterator::MakeFullMismatch(), CAttrListParser::NextAttribute(), CBatchSubmitAttrParser::NextAttribute(), CIStreamBuffer::NumberOverflow(), NAutomation::CAutomationProc::ObjectIdToRef(), SFileTrackConfig::SSite::operator=(), CRangeListImpl::Parse(), CGridCommandLineInterfaceApp::SOptions::SNCID::Parse(), ncbi::grid::netcache::search::SBlobInfoImpl::Parse(), CNetServProtoParserBase::ParseArguments(), CNetServProtoParserBase::ParseCommand(), CSeqTableLocColumns::ParseDefaults(), SNetStorageObjectOState::PendingCount(), NDirectNetStorageImpl::CRWNotFound::PendingCount(), CProcessor_ExtAnnot::Process(), CProcessor_ID2::ProcessData(), NAutomation::CAutomationProc::ProcessMessage(), CProcessor_ID1::ProcessObjStream(), CProcessor_ID1_SNP::ProcessObjStream(), CProcessor_SE::ProcessObjStream(), CProcessor_SE_SNP::ProcessObjStream(), CProcessor_St_SE_SNPT::ProcessStream(), SNetStorage_NetCacheBlob::SIState::Read(), CNetCacheReader::Read(), SNetStorageObjectOState::Read(), NDirectNetStorageImpl::CRWNotFound::Read(), SBamIndexRefIndex::Read(), CBamIndex::Read(), SNetStorageObjectRPC::SIState::Read(), SNetStorageObjectRPC::SIState::ReadConfirmation(), CVDBCursor::ReadElements(), CJsonOverUTTPReader::ReadMessage(), CSeq_entry::ReassignConflictingIds(), CSQLITE_Global::RegisterCustomVFS(), SNetStorage_NetCacheBlob::Relocate(), SNetStorageObjectIoState::Relocate(), SNetStorageObjectRPC::Relocate(), SNetStorageObjectIoState::Remove(), CSeq_loc_CI_Impl::RemoveBond(), CObjectCounterLocker::ReportIncompatibleType(), CPtrToObjectProxy::ReportIncompatibleType(), CNetCacheControl::Run(), NDirectNetStorageImpl::s_Check(), s_CreateImpl(), ncbi::grid::netcache::search::s_GetField(), s_ReadMagic(), s_ReadMessage(), s_ReadRanges(), s_ReadSocket(), s_ResolveItems(), s_ToGi(), s_TrapErrors(), s_WriteToSocket(), SDirectNetStorageByKeyImpl::SDirectNetStorageByKeyImpl(), CBGZFStream::Seek(), SNetStorage_NetCacheBlob::SetAttribute(), SNetStorageObjectIoState::SetAttribute(), CSeqTableSetFeatField::SetBytes(), CNetScheduleAPI::SetClientNode(), CNetScheduleAPI::SetClientSession(), CSeqTableLocColumns::SetColumn(), CSQLITE_Global::SetCustomPageCache(), SNetStorage_NetCacheBlob::SetExpiration(), SNetStorageObjectIoState::SetExpiration(), NDirectNetStorageImpl::CNotFound::SetExpiration(), NDirectNetStorageImpl::CFileTrack::SetExpiration(), CSeqTableSetLocField::SetInt(), CSeqTableSetFeatField::SetInt(), CSeqTableSetLocFuzzFromLim::SetInt(), CSeqTableSetLocFuzzToLim::SetInt(), CSeqTableSetLocField::SetInt8(), CSeqTableSetFeatField::SetInt8(), NDirectNetStorageImpl::CNotFound::SetLocator(), CSeq_loc_CI::SetPos(), CSeqTableSetLocField::SetReal(), CSeqTableSetFeatField::SetReal(), CSeqTableSetLocField::SetString(), CSeqTableSetFeatField::SetString(), CGridCommandLineInterfaceApp::SetUp_NetStorageCmd(), SIDUnpacking::SIDUnpacking(), ncbi::grid::netcache::search::SMerge< eKey, eEqual, string >::SMerge(), SNetScheduleNotificationReceiver::SNetScheduleNotificationReceiver(), SNetStorageByKeyRPC::SNetStorageByKeyRPC(), NDirectNetStorageImpl::CNotFound::StartWrite(), CGridCommandLineInterfaceApp::StringToJobStatus(), sx_DownCastInt8(), CSeqVectorTypes::sx_GetGapChar(), sx_GetIntId(), SNetStorageObjectIoMode::Throw(), CSeqTable_single_data::ThrowConversionError(), grid::netschedule::limits::ThrowIllegalChar(), SNetStorage::SLimits::ThrowIllegalChars(), ThrowOutOfRangeSeq_inst(), CSeqTable_single_data::ThrowOverflowError(), SNetStorage::SLimits::ThrowTooLong(), SNetStorage::SConfig::Validate(), SJsonArrayNodeImpl::VerifyIndexBounds(), SJsonNodeImpl::VerifyType(), SNetStorageObjectIState::Write(), NDirectNetStorageImpl::CRWNotFound::Write(), write_unsigned(), x_AppendAnyTo2(), x_AppendAnyTo4(), x_AppendAnyTo8(), CSeq_loc::x_CalculateTotalRangeCheckId(), CSeq_loc::x_CheckId(), CWGSSeqIterator::x_CreateChunk(), CProcess::x_DaemonizeEx(), CSeqVector_CI::x_FillCache(), CDataSource::x_FindBestTSE(), CWGSSeqIterator::x_GetAccVersionSelector(), CSeqMap::x_GetBioseqInfo(), CTableFieldHandle_Base::x_GetColumn(), CSNPDb_Impl::x_GetGraphVDBRowId(), CSeqVector::x_GetPacked2naSeqData(), CSeqVector::x_GetPacked4naSeqData(), CSeqVector::x_GetPacked8SeqData(), CSNPDb_Impl::x_GetPageVDBRowRange(), CId2ReaderBase::x_GetReplyIndex(), CNetServProtoParserBase::x_GetToken(), CSeqTableInfo::x_Initialize(), CWGSDb_Impl::x_InitIdParams(), CBamRefSeqInfo::x_LoadRangesCov(), CSeqVector_CI::x_NextCacheSeg(), CSeqVector_CI::x_PrevCacheSeg(), CCacheReader::x_ProcessBlob(), CSeq_loc_CI_Impl::x_ProcessLocation(), CBGZFFile::x_ReadBlock(), CSNPDbPageIterator::x_ReportInvalid(), CSNPDbGraphIterator::x_ReportInvalid(), CSNPDbFeatIterator::x_ReportInvalid(), CWGSSeqIterator::x_ReportInvalid(), CWGSScaffoldIterator::x_ReportInvalid(), CWGSProteinIterator::x_ReportInvalid(), CWGSFeatureIterator::x_ReportInvalid(), CId1Reader::x_ResolveId(), CTSE_Info::x_SetBioseqId(), CSeq_loc_CI::x_ThrowNotValid(), CSeqVector_CI::x_ThrowOutOfRange(), CSeqTable_multi_data::x_TryGetInt8(), and CSeqVector_CI::x_UpdateSeg().

#define NCBI_USER_THROW (   message)    NCBI_THROW(NCBI_NS_NCBI::CException, eUnknown, message)
#define NCBI_USER_THROW_FMT (   message)    NCBI_THROW_FMT(NCBI_NS_NCBI::CException, eUnknown, message)
#define RETHROW_TRACE
Value:
do { \
_TRACE("EXCEPTION: re-throw"); \
throw; \
} while(0)
void DoThrowTraceAbort(void)
"abort()" the program if set by SetThrowTraceAbort() or $ABORT_ON_THROW.
Definition: ncbiexpt.cpp:71
#define _TRACE(message)
Definition: ncbidbg.hpp:120

Rethrow trace.

Reason for do {...} while in macro definition is to permit a natural syntax usage when a user wants to write something like:

if (expression) RETHROW_TRACE; else do_something_else;

Example:

  • RETHROW_TRACE;

Definition at line 187 of file ncbiexpt.hpp.

#define STD_CATCH (   message)
Value:
catch (NCBI_NS_STD::exception& e) { \
NCBI_NS_NCBI::CNcbiDiag() \
<< "[" << message << "] Exception: " << e.what(); \
}
void Error(CExceptionArgs_Base &args)
Definition: ncbiexpt.hpp:1041

Standard handling of "exception"-derived exceptions.

This macro is deprecated - use *_X or *_XX variant instead of it.

Definition at line 400 of file ncbiexpt.hpp.

#define STD_CATCH_ALL (   message)
Value:
STD_CATCH(message) \
catch (...) { \
NCBI_NS_NCBI::CNcbiDiag() \
<< "[" << message << "] Unknown exception"; \
}
void Error(CExceptionArgs_Base &args)
Definition: ncbiexpt.hpp:1041
#define STD_CATCH(message)
Standard handling of "exception"-derived exceptions.
Definition: ncbiexpt.hpp:400

Standard handling of "exception"-derived exceptions; catches non-standard exceptions and generates "unknown exception" for all other exceptions.

This macro is deprecated - use *_X or *_XX variant instead of it.

Definition at line 410 of file ncbiexpt.hpp.

Referenced by NcbiStreamCopyThrow(), CConversionApp::Run(), CRemoteAppReaper::CCollector::SThread::Stop(), and impl::CDriverContext::~CDriverContext().

#define STD_CATCH_ALL_X (   err_subcode,
  message 
)    STD_CATCH_ALL_XX(NCBI_USE_ERRCODE_X, err_subcode, message)

Standard handling of "exception"-derived exceptions; catches non-standard exceptions and generates "unknown exception" for all other exceptions.

With default error code and given error subcode placed in diagnostics

See also
STD_CATCH_X, NCBI_DEFINE_ERRCODE_X, ERR_POST_X

Definition at line 448 of file ncbiexpt.hpp.

Referenced by CPushback_Streambuf::CPushback_Streambuf(), CThreadPool_ThreadImpl::OnExit(), CSocketRequest::Process(), CAcceptRequest::Process(), SAccGuide::SAccGuide(), CCIGAR_Formatter::x_FormatAlignmentRows(), CBulkInsertImpl::~CBulkInsertImpl(), CDatabase::~CDatabase(), CDatabaseImpl::~CDatabaseImpl(), CQueryImpl::~CQueryImpl(), and CSQLITE_Statement::~CSQLITE_Statement().

#define STD_CATCH_ALL_XX (   err_name,
  err_subcode,
  message 
)
Value:
STD_CATCH_XX(err_name, err_subcode, message) \
catch (...) { \
NCBI_NS_NCBI::CNcbiDiag() \
<< ErrCode(NCBI_ERRCODE_X_NAME(err_name), err_subcode) \
<< "[" << message << "] Unknown exception"; \
}
#define STD_CATCH_XX(err_name, err_subcode, message)
Standard handling of "exception"-derived exceptions with given error code name and given error subcod...
Definition: ncbiexpt.hpp:467
#define ErrCode()
Get the error code for the last failed system function.
Definition: mdb.c:369
void Error(CExceptionArgs_Base &args)
Definition: ncbiexpt.hpp:1041
#define NCBI_ERRCODE_X_NAME(name)
Returns value of error code by its name defined by NCBI_DEFINE_ERRCODE_X.
Definition: ncbidiag.hpp:341

Standard handling of "exception"-derived exceptions; catches non-standard exceptions and generates "unknown exception" for all other exceptions.

With given error code name and given error subcode placed in diagnostics

See also
STD_CATCH_X, NCBI_DEFINE_ERRCODE_X, ERR_POST_XX

Definition at line 481 of file ncbiexpt.hpp.

Referenced by CThreadInPool< TRequest >::OnExit(), CRPCClient_Base::x_Ask(), and CRPCClient_Base::~CRPCClient_Base().

#define STD_CATCH_X (   err_subcode,
  message 
)    STD_CATCH_XX(NCBI_USE_ERRCODE_X, err_subcode, message)

Standard handling of "exception"-derived exceptions with default error code and given error subcode placed in diagnostics.

Default error code is used and error subcode checking for correctness is made in same way as in ERR_POST_X macro.

See also
NCBI_DEFINE_ERRCODE_X, ERR_POST_X

Definition at line 440 of file ncbiexpt.hpp.

#define STD_CATCH_XX (   err_name,
  err_subcode,
  message 
)
Value:
catch (NCBI_NS_STD::exception& e) { \
NCBI_CHECK_ERR_SUBCODE_X_NAME(err_name, err_subcode); \
NCBI_NS_NCBI::CNcbiDiag() \
<< ErrCode(NCBI_ERRCODE_X_NAME(err_name), err_subcode) \
<< "[" << message << "] Exception: " << e.what(); \
}
#define ErrCode()
Get the error code for the last failed system function.
Definition: mdb.c:369
void Error(CExceptionArgs_Base &args)
Definition: ncbiexpt.hpp:1041
#define NCBI_CHECK_ERR_SUBCODE_X_NAME(name, subcode)
Issue compile-time error if error subcode given is not valid for given error code name...
Definition: ncbidiag.hpp:444
#define NCBI_ERRCODE_X_NAME(name)
Returns value of error code by its name defined by NCBI_DEFINE_ERRCODE_X.
Definition: ncbidiag.hpp:341

Standard handling of "exception"-derived exceptions with given error code name and given error subcode placed in diagnostics.

See also
STD_CATCH_X, NCBI_DEFINE_ERRCODE_X, ERR_POST_XX

Definition at line 467 of file ncbiexpt.hpp.

#define THROW0_TRACE (   exception_object)
Value:
exception_object, #exception_object)
#define DIAG_COMPILE_INFO
Make compile time diagnostic information object to use in CNcbiDiag and CException.
Definition: ncbidiag.hpp:169
const T & DbgPrint(const CDiagCompileInfo &info, const T &e, const char *e_str)
Templated function for printing debug message.
Definition: ncbiexpt.hpp:113

Throw trace.

Combines diagnostic message trace and exception throwing. First the diagnostic message is printed, and then exception is thrown.

Argument can be a simple string, or an exception object.

Example:

  • THROW0_TRACE("Throw just a string");
  • THROW0_TRACE(runtime_error("message"));

Definition at line 203 of file ncbiexpt.hpp.

Referenced by CPrintOptions::GetFormatFromName(), and CId1FetchApp::LookUpFlatSeqID().

#define THROW0np_TRACE (   exception_object)
Value:
exception_object, #exception_object)
#define DIAG_COMPILE_INFO
Make compile time diagnostic information object to use in CNcbiDiag and CException.
Definition: ncbidiag.hpp:169
const T & DbgPrintNP(const CDiagCompileInfo &info, const T &e, const char *e_str)
Create diagnostic stream for printing specified message.
Definition: ncbiexpt.hpp:168

Throw trace.

Combines diagnostic message trace and exception throwing. First the diagnostic message is printed, and then exception is thrown.

Argument can be any printable object; that is, any object with a defined output operator.

Similar to THROW0p_TRACE except that program is not "aborted" when exception is thrown, and argument type can be an aggregate type such as Vector<T> where T is a printable argument.

Example:

Definition at line 242 of file ncbiexpt.hpp.

#define THROW0p_TRACE (   exception_object)
Value:
exception_object, #exception_object)
#define DIAG_COMPILE_INFO
Make compile time diagnostic information object to use in CNcbiDiag and CException.
Definition: ncbidiag.hpp:169
const T & DbgPrintP(const CDiagCompileInfo &info, const T &e, const char *e_str)
Create diagnostic stream for printing specified message and "abort()" the program if set by SetThrowT...
Definition: ncbiexpt.hpp:154

Throw trace.

Combines diagnostic message trace and exception throwing. First the diagnostic message is printed, and then exception is thrown.

Argument can be any printable object; that is, any object with a defined output operator.

Program may abort if so set by SetThrowTraceAbort() or $ABORT_ON_THROW.

Example:

Definition at line 222 of file ncbiexpt.hpp.

#define THROW1_TRACE (   exception_class,
  exception_arg 
)
Value:
exception_class(exception_arg), #exception_class)
#define DIAG_COMPILE_INFO
Make compile time diagnostic information object to use in CNcbiDiag and CException.
Definition: ncbidiag.hpp:169
const T & DbgPrint(const CDiagCompileInfo &info, const T &e, const char *e_str)
Templated function for printing debug message.
Definition: ncbiexpt.hpp:113

Throw trace.

Combines diagnostic message trace and exception throwing. First the diagnostic message is printed, and then exception is thrown.

Arguments can be any exception class with the specified initialization argument. The class argument need not be derived from std::exception as a new class object is constructed using the specified class name and initialization argument.

Example:

  • THROW1_TRACE(runtime_error, "Something is weird...");

Definition at line 258 of file ncbiexpt.hpp.

Referenced by CCgiIbuffer::CCgiIbuffer(), CCgiObuffer::CCgiObuffer(), GetHexChar(), CCgiContext::GetRequestValue(), CCgiResponse::out(), CCgiObuffer::overflow(), ReadBlock(), ReadId(), ReadNumber(), ReadOctetString(), ReadString(), CTest::Run(), s_GetFormat(), CCgiResponse::SetStatus(), CCgiIbuffer::underflow(), and CPackString::x_RefCounterError().

#define THROW1np_TRACE (   exception_class,
  exception_arg 
)
Value:
exception_class(exception_arg), #exception_class)
#define DIAG_COMPILE_INFO
Make compile time diagnostic information object to use in CNcbiDiag and CException.
Definition: ncbidiag.hpp:169
const T & DbgPrintNP(const CDiagCompileInfo &info, const T &e, const char *e_str)
Create diagnostic stream for printing specified message.
Definition: ncbiexpt.hpp:168

Throw trace.

Combines diagnostic message trace and exception throwing. First the diagnostic message is printed, and then exception is thrown.

Arguments can be any exception class with a the specified initialization argument. The class argument need not be derived from std::exception as a new class object is constructed using the specified class name and initialization argument.

Similar to THROW1p_TRACE except that program is not "aborted" when exception is thrown, and argument type can be an aggregate type such as Vector<T> where T is a printable argument.

Example:

  • THROW1np_TRACE(CUserClass, "argument");

Definition at line 298 of file ncbiexpt.hpp.

#define THROW1p_TRACE (   exception_class,
  exception_arg 
)
Value:
exception_class(exception_arg), #exception_class)
#define DIAG_COMPILE_INFO
Make compile time diagnostic information object to use in CNcbiDiag and CException.
Definition: ncbidiag.hpp:169
const T & DbgPrintP(const CDiagCompileInfo &info, const T &e, const char *e_str)
Create diagnostic stream for printing specified message and "abort()" the program if set by SetThrowT...
Definition: ncbiexpt.hpp:154

Throw trace.

Combines diagnostic message trace and exception throwing. First the diagnostic message is printed, and then exception is thrown.

Arguments can be any exception class with a the specified initialization argument. The class argument need not be derived from std::exception as a new class object is constructed using the specified class name and initialization argument.

Program may abort if so set by SetThrowTraceAbort() or $ABORT_ON_THROW.

Example:

Definition at line 278 of file ncbiexpt.hpp.

#define THROW_TRACE (   exception_class,
  exception_args 
)
Value:
exception_class exception_args, #exception_class)
#define DIAG_COMPILE_INFO
Make compile time diagnostic information object to use in CNcbiDiag and CException.
Definition: ncbidiag.hpp:169
const T & DbgPrint(const CDiagCompileInfo &info, const T &e, const char *e_str)
Templated function for printing debug message.
Definition: ncbiexpt.hpp:113

Throw trace.

Combines diagnostic message trace and exception throwing. First the diagnostic message is printed, and then exception is thrown.

Arguments can be any exception class with a the specified initialization arguments. The class argument need not be derived from std::exception as a new class object is constructed using the specified class name and initialization arguments.

Similar to THROW1_TRACE except that the exception class can have multiple initialization arguments instead of just one.

Example:

Definition at line 321 of file ncbiexpt.hpp.

Referenced by CreateAsnStruct().

#define THROWnp_TRACE (   exception_class,
  exception_args 
)
Value:
exception_class exception_args, #exception_class)
#define DIAG_COMPILE_INFO
Make compile time diagnostic information object to use in CNcbiDiag and CException.
Definition: ncbidiag.hpp:169
const T & DbgPrintNP(const CDiagCompileInfo &info, const T &e, const char *e_str)
Create diagnostic stream for printing specified message.
Definition: ncbiexpt.hpp:168

Throw trace.

Combines diagnostic message trace and exception throwing. First the diagnostic message is printed, and then exception is thrown.

Arguments can be any exception class with a the specified initialization argument. The class argument need not be derived from std::exception as a new class object is constructed using the specified class name and initialization argument.

Argument type can be an aggregate type such as Vector<T> where T is a printable argument.

Similar to THROWp_TRACE except that program is not "aborted" when exception is thrown.

Example:

Definition at line 366 of file ncbiexpt.hpp.

#define THROWp_TRACE (   exception_class,
  exception_args 
)
Value:
exception_class exception_args, #exception_class)
#define DIAG_COMPILE_INFO
Make compile time diagnostic information object to use in CNcbiDiag and CException.
Definition: ncbidiag.hpp:169
const T & DbgPrintP(const CDiagCompileInfo &info, const T &e, const char *e_str)
Create diagnostic stream for printing specified message and "abort()" the program if set by SetThrowT...
Definition: ncbiexpt.hpp:154

Throw trace.

Combines diagnostic message trace and exception throwing. First the diagnostic message is printed, and then exception is thrown.

Arguments can be any exception class with a the specified initialization arguments. The class argument need not be derived from std::exception as a new class object is constructed using the specified class name and initialization arguments.

Program may abort if so set by SetThrowTraceAbort() or $ABORT_ON_THROW.

Similar to THROW1p_TRACE except that the exception class can have multiple initialization arguments instead of just one.

Example:

Definition at line 344 of file ncbiexpt.hpp.

#define THROWS (   x)

Definition at line 75 of file ncbiexpt.hpp.

#define THROWS_NONE

Define THROWS macros for C++ exception specification.

Define use of C++ exception specification mechanism: "f(void) throw();" <== "f(void) THROWS_NONE;" "g(void) throw(e1,e2);" <== "f(void) THROWS((e1,e2));"

Definition at line 74 of file ncbiexpt.hpp.

Typedef Documentation

typedef void(* FExceptionArgsManip) (CExceptionArgs_Base &)

Definition at line 670 of file ncbiexpt.hpp.

typedef int(* TErrorCode) (void)

Define function type for "error code" function.

Definition at line 1431 of file ncbiexpt.hpp.

typedef const char*(* TErrorStr) (int errnum)

Define function type for "error str" function.

Definition at line 1434 of file ncbiexpt.hpp.

Enumeration Type Documentation

Error code category.

Enumerator
eGeneric 
eNcbi 
eMsWindows 

Definition at line 146 of file ncbierror.hpp.

Enumerator
eNotSet 
eSuccess 
eAddressFamilyNotSupported 

Generic error codes are set based on errno error codes.

eAddressInUse 
eAddressNotAvailable 
eAlreadyConnected 
eArgumentListTooLong 
eArgumentOutOfDomain 
eBadAddress 
eBadFileDescriptor 
eBadMessage 
eBrokenPipe 
eConnectionAborted 
eConnectionAlreadyInProgress 
eConnectionRefused 
eConnectionReset 
eCrossDeviceLink 
eDestinationAddressRequired 
eDeviceOrResourceBusy 
eDirectoryNotEmpty 
eExecutableFormatError 
eFileExists 
eFileTooLarge 
eFilenameTooLong 
eFunctionNotSupported 
eHostUnreachable 
eIdentifierRemoved 
eIllegalByteSequence 
eInappropriateIoControlOperation 
eInterrupted 
eInvalidArgument 
eInvalidSeek 
eIoError 
eIsADirectory 
eMessageSize 
eNetworkDown 
eNetworkReset 
eNetworkUnreachable 
eNoBufferSpace 
eNoChildProcess 
eNoLink 
eNoLockAvailable 
eNoMessage 
eNoProtocolOption 
eNoSpaceOnDevice 
eNoSuchDeviceOrAddress 
eNoSuchDevice 
eNoSuchFileOrDirectory 
eNoSuchProcess 
eNotADirectory 
eNotASocket 
eNotConnected 
eNotEnoughMemory 
eNotSupported 
eOperationCanceled 
eOperationInProgress 
eOperationNotPermitted 
eOperationNotSupported 
eOperationWouldBlock 
ePermissionDenied 
eProtocolError 
eProtocolNotSupported 
eReadOnlyFileSystem 
eResourceDeadlockWouldOccur 
eResourceUnavailableTryAgain 
eResultOutOfRange 
eTextFileBusy 
eTimedOut 
eTooManyFilesOpenInSystem 
eTooManyFilesOpen 
eTooManyLinks 
eTooManySymbolicLinkLevels 
eValueTooLarge 
eWrongProtocolType 
eUnknown 

Unknown error.

Definition at line 55 of file ncbierror.hpp.

Error types that an application can generate.

Each derived class has its own error codes and their interpretations. Define two generic error codes "eInvalid" and "eUnknown" to be used by all NCBI applications.

Enumerator
eInvalid 

To be used ONLY as a return value; please, NEVER throw an exception with this code.

eUnknown 

Unknown exception.

Definition at line 728 of file ncbiexpt.hpp.

Error types that corelib can generate.

These generic error conditions can occur for corelib applications.

Enumerator
eCore 

Generic corelib error.

eNullPtr 

Null pointer error.

eDll 

Dll error.

eDiagFilter 

Illegal syntax of the diagnostics filter string.

eInvalidArg 

Invalid argument error.

Definition at line 1343 of file ncbiexpt.hpp.

Enumerator
eUndefined 

Parameter is missing/undefined.

eInvalidCharacter 

Parameter value contains invalid character.

Definition at line 1368 of file ncbiexpt.hpp.

template<class TBase, TErrorCode PErrCode = NCBI_NS_NCBI::CErrnoAdapt::GetErrCode, TErrorStr PErrStr = NCBI_NS_NCBI::CErrnoAdapt::GetErrCodeString>
enum CErrnoTemplExceptionEx::EErrCode

Error type that an application can generate.

Enumerator
eErrno 

Error code.

Definition at line 1450 of file ncbiexpt.hpp.

Miscellaneous generic hints, flags and attributes.

Enumerator
fConsole 

Mark the exception with this flag if the exception is supposed to be extra-visible, such as to go to a console or a dialog that's looked at by the end user.

Naturally, the message should be clear and informative enough to be actually helpful for the user. If such "console" exception is passed to the diagnostic (e.g. "ERR_POST(ex);", then the posting will be automatically marked as "console" too (so it'll work as "ERR_POST(Console << ex);").

Definition at line 736 of file ncbiexpt.hpp.

Function Documentation

void Console ( CExceptionArgs_Base args)
inline
void Critical ( CExceptionArgs_Base args)
inline

Definition at line 1047 of file ncbiexpt.hpp.

References eDiag_Critical, and CExceptionArgs_Base::SetSeverity().

Referenced by CThreadPool_Impl::Abort(), CAV_DisplayMultiple(), wgsparse::CheckBioSource(), CNCBlobStorage::CheckDiskSpace(), wgsparse::CheckGeneralLocalIds(), wgsparse::CheckScaffoldsFarPointers(), wgsparse::CheckSeqEntry(), wgsparse::CheckSetOfIds(), CServer_ConnectionPool::CloseConnection(), CSrvSocketTask::Connect(), wgsparse::CreateAccession(), wgsparse::CreateBiosource(), wgsparse::DBLinkProblemReport(), CObjectMemoryPool::Delete(), DisableSuppressSystemMessageBox(), DoSocketWait(), CRecNoSaver::ExecuteSlice(), CNCBlobStorage::GetDiskFree(), CNCBlobStorage::GetFullBlobsList(), CUnixFeature::GetGroupGIDByName(), CUnixFeature::GetGroupNameByGID(), CTaskServer::GetHostByIP(), CTaskServer::GetIPByHost(), CSrvSocketTask::GetLocalPort(), CNCBlobStorage::GetMaxSyncLogRecNo(), CNCDistributionConf::GetSlotByNetCacheKey(), CUnixFeature::GetUserNameByUID(), CUnixFeature::GetUserUIDByName(), CNcbiRegistry::IncludeNcbircIfAllowed(), CNCDistributionConf::Initialize(), CNCSyncLog::Initialize(), InitSocketsMan(), CCompoundRWRegistry::LoadBaseRegistries(), CRemoteBlast::LoadFromArchive(), LogCallback(), wgsparse::LookupCommonOrgRefs(), CMainLoopThread::Main(), main(), wgsparse::OpenOutputFile(), wgsparse::OutputSubmission(), wgsparse::ParseSubmissions(), wgsparse::PerformLookup(), CNCMMCentral::PrepareToStop(), CNCBlobStorage::ReadChunkData(), CSearchHelper::ReadModFiles(), wgsparse::ReplaceOldCitSub(), wgsparse::ReportLackOfDBLinkData(), wgsparse::ReportNewDBLinkData(), wgsparse::ReportVersionProblem(), CDbapiSimpleApp::RetrieveData(), CNetScheduleDApp::Run(), CNetStorageDApp::Run(), wgsparse::CWGSParseApp::Run(), SGridWorkerNodeImpl::Run(), CSrvTask::RunAfter(), CNCMMCentral::RunLateInit(), s_CloseSocket(), s_ConvertSeverity(), s_ConvertTaskResult(), s_CreateListeningSocket(), s_CreateNewFile(), s_DeleteDBFile(), s_FireTimers(), s_Initialize(), s_LoadConfFile(), s_LockFileMem(), s_LockInstanceGuard(), s_MapFile(), s_OpenIndexDB(), s_ProcessListenError(), s_ProcessListenEvent(), s_ProcessParameters(), s_ReadConfiguration(), s_ReadHeader(), s_ReadServerParams(), s_ReadStorageParams(), s_SetSocketNonBlock(), s_SetSocketOptions(), s_SetSocketQuickAck(), s_StartThread(), s_StopCurMgrThread(), ScanForCpGs(), CConn_Streambuf::setbuf(), CRWStreambuf::setbuf(), CSrvSocketTask::StartProcessing(), StartSocketsMan(), CAsyncDiagThread::Stop(), wgsparse::UpdateMasterForExtra(), CValidError_bioseq::ValidateSegRef(), CNCBlobStorage::WriteChunkData(), CBlobCacher::x_CacheMapRecs(), CBlobCacher::x_CacheMetaRec(), CQueryImpl::x_Close(), CNCBlobAccessor::x_DelCorruptedVersion(), CBlobCacher::x_DelFileAndRetryCreate(), CServer::x_DoRun(), CDiskFlusher::x_FlushNextFile(), CAlnMap::x_GetChunks(), CNSTDatabase::x_PostCheckConnection(), CBlobCacher::x_PreCacheRecNums(), CNCActiveHandler::x_ProcessProtocolError(), CNCMessageHandler::x_ReadBlobChunkLength(), CNSTDatabase::x_ReadDbAccessInfo(), CTar::x_ReadEntryInfo(), CNCActiveHandler::x_ReadSizeToRead(), CNCActiveHandler::x_ReplaceServerConn(), CPoolOfThreads< TRequest >::x_RunNewThread(), CNCPeerControl::x_SlotsInitiallySynced(), CCancelRequestException::~CCancelRequestException(), CConditionVariable::~CConditionVariable(), CSrvSocketTask::~CSrvSocketTask(), and SNCDBFileInfo::~SNCDBFileInfo().

template<typename T >
const T& DbgPrint ( const CDiagCompileInfo info,
const T e,
const char *  e_str 
)
inline

Templated function for printing debug message.

Print debug message for the specified exception type.

Definition at line 113 of file ncbiexpt.hpp.

References DoDbgPrint().

const char* DbgPrint ( const CDiagCompileInfo info,
const char *  e,
const char *   
)
inline

Print debug message for "const char*" object.

Definition at line 122 of file ncbiexpt.hpp.

References DoDbgPrint().

char* DbgPrint ( const CDiagCompileInfo info,
char *  e,
const char *   
)
inline

Print debug message for "char*" object.

Definition at line 131 of file ncbiexpt.hpp.

References DoDbgPrint().

const string& DbgPrint ( const CDiagCompileInfo info,
const string e,
const char *   
)
inline

Print debug message for "std::string" object.

Definition at line 140 of file ncbiexpt.hpp.

References DoDbgPrint().

template<typename T >
const T& DbgPrintNP ( const CDiagCompileInfo info,
const T e,
const char *  e_str 
)
inline

Create diagnostic stream for printing specified message.

Similar to DbgPrintP except that "abort()" not executed.

See also
DbgPrintP()

Definition at line 168 of file ncbiexpt.hpp.

References DoDbgPrint().

template<typename T >
const T& DbgPrintP ( const CDiagCompileInfo info,
const T e,
const char *  e_str 
)
inline

Create diagnostic stream for printing specified message and "abort()" the program if set by SetThrowTraceAbort() or $ABORT_ON_THROW.

See also
SetThrowTraceAbort(), DoThrowTraceAbort()

Definition at line 154 of file ncbiexpt.hpp.

References DoThrowTraceAbort(), and eDiag_Trace.

void DoDbgPrint ( const CDiagCompileInfo info,
const char *  message 
)

Print the specified debug message.

Definition at line 84 of file ncbiexpt.cpp.

References DoThrowTraceAbort(), and eDiag_Trace.

Referenced by DbgPrint(), and DbgPrintNP().

void DoDbgPrint ( const CDiagCompileInfo info,
const string message 
)

Print the specified debug message.

Definition at line 90 of file ncbiexpt.cpp.

References DoThrowTraceAbort(), and eDiag_Trace.

void DoDbgPrint ( const CDiagCompileInfo info,
const char *  msg1,
const char *  msg2 
)

Print the specified debug messages.

Definition at line 96 of file ncbiexpt.cpp.

References DoThrowTraceAbort(), and eDiag_Trace.

void DoThrowTraceAbort ( void  )

"abort()" the program if set by SetThrowTraceAbort() or $ABORT_ON_THROW.

Definition at line 71 of file ncbiexpt.cpp.

References _T_XCSTRING, abort(), ABORT_ON_THROW, NcbiSys_getenv, s_DoThrowTraceAbort, s_DTTA_Initialized, and str().

Referenced by DbgPrintP(), DoDbgPrint(), and CException::x_ReportToDebugger().

void Error ( CExceptionArgs_Base args)
inline

Definition at line 1041 of file ncbiexpt.hpp.

References eDiag_Error, and CExceptionArgs_Base::SetSeverity().

Referenced by CChangeUnindexedObjectCommand< T >::Add(), CChangeUnindexedObjectCommand< T >::AddBioseq(), CIndexedDb_New::AddIndexInfo(), CPerfLogGuard::AddParameter(), CProjectService::AddProjectView(), CScoreBuilderBase::AddScore(), CGuiRegistry::AddSite(), CWindowManagerService::AddToolBarContext(), CWindowManagerService::AddToolBarFactory(), CViewManagerService::AddToWorkbench(), AlignmentDisplay::AlignmentDisplay(), AlignmentSet::AlignmentSet(), CTableDataSeq_table::AllowEdit(), CCyclicDepends::AnalyzeProjItem(), LBOS::AnnounceFromRegistry(), CSeqIdChunkFile::Append(), CChunkFile::Append(), CMacroLib::AppendToLibrary(), CDockManager::ApplyLayout(), CGlRender::Begin(), BlastJSON_FormatReport(), BlastXML2_FormatReport(), BlastXML_FormatReport(), CGlRender::BlendColor(), CGlRender::BlendFunc(), CGlRender::BlendFuncSeparate(), BOOST_AUTO_TEST_CASE(), CGraphUtils::CalcGraphLevels(), CEUtilsApp::CallEFetch(), CEUtilsApp::CallELink(), CEUtilsApp::CallESearch(), CAlnSpanVertModel::CAlnSpanVertModel(), CAsnCacheStore::CAsnCacheStore(), CAV_DisplayMultiple(), CGLFrameBuffer::CheckFBOError(), CGlUtils::CheckGlError(), wgsparse::CheckNucBioseqs(), wgsparse::CheckOrganisms(), wgsparse::CheckPubs(), wgsparse::CheckSecondaries(), wgsparse::CheckSeqEntry(), CIndexedDb_Old::CIndexedDb_Old(), CVisibleRange::Clamp(), CWorkspaceAutoSaver::CleanUp(), CleanupCommand(), CSGAlignmentDS::ClearCache(), CFeatTableDS::ClearCurrentJob(), CGenBankUIDataSource::Close(), CMC3_CodingRegion< order >::CMC3_CodingRegion(), CNADocSumIterator::CNADocSumIterator(), CGlRender::ColorC(), CGlRender::ColorMask(), CDBAPI_CacheAdmin::Connect(), ConvertToPairwise(), CTableImportDataSource::ConvertToSeqAnnot(), CVariationUtilities::CorrectRefAllele(), CreateDllBuildTree(), CEntrezDB::CreateGene_Gene(), CEntrezDB::CreateGeneSet_Gene(), CAlignCleanup::CreatePairwiseFromMultiple(), CSequenceTrackFactory::CreateTracks(), CViewManagerService::CreateViewInstance(), CSemaphore::CSemaphore(), CSmallDNS::CSmallDNS(), CSymbolGuard::CSymbolGuard(), CTaxonCache::CTaxonCache(), CTLibContext::CTLIB_cterr_handler(), CTLibContext::CTLIB_srverr_handler(), CSGGenBankDS::DeleteAllJobs(), CRegistryWriteView::DeleteField(), CFeaturePanelDS::DeleteMetaDataJob(), CGlRender::Disable(), SAsnProjectSingleT::DoCreate(), SAsnProjectMultipleT::DoCreate(), CCacheCleanerThread::DoJob(), CBDB_CheckPointThread::DoJob(), AlignmentUtility::DoLeaveNOut(), CMostAffinityJob< TImpl >::Done(), CSeqMaskerOstat::doSetParam(), CTaxValidationAndCleanup::DoTaxonomyUpdate(), CAlignGlyph::DrawPWAlignElem(), AlignmentDisplay::DumpCondensed(), CGridCommandLineInterfaceApp::DumpJobInputOutput(), DumpSeqEntries(), CGlRender::Enable(), CGlRender::End(), CPMCIDConverterServer::error(), CHydraServer::error(), CEUtilsGeneric::error(), CEUtilsParser::error(), CCmdCreateDesc::Execute(), CAddLocs_local::Execute(), CGBObjectLoader::Execute(), CCreateFeatures_local::Execute(), CCurVerReader::ExecuteSlice(), CNetServer::ExecWithRetry(), CTableAnnotDataSource::FindLocations(), CCodeGenerator::FindModuleByName(), CTaxValidationAndCleanup::FixOneSpecificHost(), CRegistryFile::FromConfigFile(), g_GetWorkerNodeInfo(), CBlastAligner::GenerateAlignments(), CRemoteBlastAligner::GenerateAlignments(), Get3type(), CAlnVecMultiDataSource::GetAlignType(), IAlnGraphicDataSource::GetAlignType(), CGencollSvc::GetAssmAccs(), CSeqUtils::GetAssmAccs_Gi(), CSeqUtils::GetAssmIds_GI(), CSeqUtils::GetAssmIds_GIChr(), CAssemblyInfo::GetAssms_Gi(), CFeatureIndex::GetBestGene(), CRemoteBlastDbDataLoader::GetBlobs(), CCgiRequest::GetCGIEntries(), AlignmentDisplay::GetCharAt(), CSeqUtils::GetChrGI(), CTableDataFTable::GetColsCount(), CTableDataSeq_table::GetColumnCommonStrings(), CTableDataFTable::GetColumnLabel(), CTableDataSeq_table::GetColumnLabel(), CTableDataFTable::GetColumnType(), CTableDataSeq_table::GetColumnType(), CBamUtils::GetCoverageGraphInfo(), CSeqDB::GetDiskUsage(), CEditObjectSeq_feat::GetEditCommand(), CEditObjectSeq_desc::GetEditCommand(), CEditObjectSubmit_block::GetEditCommand(), CObjectListTableModel::GetExtraValueAt(), GetFeatureFromTableId(), CFtglFontManager::GetFont(), CGencollSvc::GetGCAssembly(), CSeqUtils::GetGiPlacements(), CUnixFeature::GetGroupGIDByName(), CUnixFeature::GetGroupNameByGID(), CGeneGroup::GetHTMLActiveAreas(), CLayoutGroup::GetHTMLActiveAreas(), CTableDataFTable::GetIntValue(), CTableDataSeq_table::GetIntValue(), CTableDataBioTreeContainer::GetIntValue(), CProjectItemLabelHandler::GetLabel(), CWndLayoutReg::GetLayout(), CGraphTrack::GetLegend(), CSeqUtils::GetLocPlacements(), CRfamTool::GetModelByAccession(), CRfamTool::GetModelByIdentification(), CTableDataSeq_table::GetObjectValue(), CTempTrackProxy::GetOrder(), CFeatureIndex::GetOverlappingSource(), CProjectStorage::GetProject(), GetPubdescFromEntrezById(), CRsitesGlyph::GetRange(), CTableDataSeq_table::GetRealValue(), CTableDataBioTreeContainer::GetRealValue(), CProjectView::GetReflectionInfo(), CApplyRNAITSDlg::GetRNAITSList_AlignCoordFromDlg(), CApplyRNAITSDlg::GetRNAITSList_SeqCoordFromDlg(), CTableDataFTable::GetRowsCount(), CTableDataSeq_table::GetRowsCount(), CBioseqIndex::GetSequence(), CFeatureIndex::GetSequence(), CTraceGraphTrackFactory::GetSettings(), CViewManagerService::GetSingletonView(), CNCDistributionConf::GetSlotByNetCacheKey(), CTableDataFTable::GetStringValue(), CTableDataSeq_table::GetStringValue(), CTableDataBioTreeContainer::GetStringValue(), CTMSUtils::GetTrackMetaData(), CUnixFeature::GetUserNameByUID(), CUnixFeature::GetUserUIDByName(), CCrossAlignView::GetVisibleRanges(), CDotMatrixView::GetVisibleRanges(), CRegistryWriteView::GetWriteView(), CCleanupApp::HandleSeqEntry(), CAsn2FlatApp::HandleSeqEntry(), CAsn2FlatApp::HandleSeqSubmit(), CCleanupApp::HandleSubmitBlock(), CDeflineProcess::IndexedProcess(), CAsnSubCacheCreateApplication::IndexNewBlobsInSubCache(), CMSMod::Init(), CTableDataSeq_table::Init(), CMassArray::Init(), CSeqTableReader::Init(), CTaxonCache::Initialize(), CPhyTreeView::InitView(), InputError(), CWinMaskUtil::CIdSet_SeqId::insert(), CWinMaskUtil::CIdSet_TextMatch::insert(), wgsparse::IsDupIds(), CTaxValidationAndCleanup::IsOneSpecificHostValid(), CBioseqIndex::IterateDescriptors(), CBioseqIndex::IterateFeatures(), CBioseqIndex::IterateGaps(), CGlRender::LineCapStyle(), CGlRender::LineJoinStyle(), CGlRender::LineStipple(), CGlRender::LineWidth(), CGlTexture::Load(), LoadASNFromIstream(), CSUCRefreshCntrl::CSUCRefreshCntrlHelper::LoadData(), CTableDataSNP::LoadData(), CClickableSortUniqueCount::LoadData(), CValidateFrame::LoadData(), CRemoteBlast::LoadFromArchive(), CDockManager::LoadLayout(), LoadScope(), CGlWidgetBase::LoadSettings(), CEditingBtnsPanel::LoadSettings(), CTestApplication::LoadTable(), LogCallback(), CReloadPublications::LookUpByPmid(), CSQLITE3_Cache::CWriterThread::Main(), CAsn2AsnThread::Main(), CGlTexture::MakeCurrent(), CGlOsContext::MakeCurrent(), CGlBuffer20< T >::MapBuffer(), CGlBuffer11< T >::MapBuffer(), CVisibleRange::Match(), CAlignSort::MergeSortedFiles(), CGlRender::Normal3f(), CAsn2FastaApp::ObtainSeqEntryFromBioseq(), CAsn2FlatApp::ObtainSeqEntryFromBioseq(), CAsn2FastaApp::ObtainSeqEntryFromBioseqSet(), CAsn2FlatApp::ObtainSeqEntryFromBioseqSet(), CAsn2FastaApp::ObtainSeqEntryFromSeqEntry(), CAsn2FlatApp::ObtainSeqEntryFromSeqEntry(), CAsn2FastaApp::ObtainSeqEntryFromSeqSubmit(), CSelectFeatureDlg::OnButtonLoadFile(), CSelectFeatureDlg::OnButtonSaveFile(), CApplyRNAITSDlg::OnCtrlFromKillFocus(), CApplyRNAITSDlg::OnCtrlToKillFocus(), CFrameworkDemoGUI::OnDiagnosticsTimer(), CNetStorageServerListener::OnErrorImpl(), CCrossAlnDemoDlg::OnFileClick(), CHitMatrixDemoDlg::OnFileClick(), CAppJobEventTranslator::OnJobProgress(), CJournalPanel::OnJournalLookupIsojtaClick(), CFlatFileDemoDlg::OnLoadFileClick(), CSubPrep_panel::OnSaveBtnClick(), CDataMiningPanel::OnSearchFinished(), CViewGraphic::OnVisibleRangeChanged(), CGenBankUIDataSource::Open(), CLBLASTUIDataSource::Open(), CBamUIDataSource::Open(), CSQLITE3_Cache::Open(), CSeqIdChunkFile::OpenForRead(), CChunkFile::OpenForRead(), CSeqIdChunkFile::OpenForWrite(), CChunkFile::OpenForWrite(), CAlignSort::SAlignExtractor::operator()(), CPrimeCacheApplication::CCacheBioseq::operator()(), SBlobInserter::operator()(), Vector< T >::operator[](), Matrix< T >::operator[](), wgsparse::OutputMaster(), wgsparse::OutputSubmission(), SDiagMessage::ParseDiagStream(), ParseLbosConfigureAnswer(), wgsparse::ParseSubmissions(), PatchTargetSequence(), CGlRender::PdfShadeStyle(), CChangePhyloPropertyCmd::PerformEdit(), CGlRender::PointSize(), CGlRender::PolygonMode(), CGlRender::PolygonStipple(), CGlRender::PopAttrib(), CPerfLogGuard::Post(), CEventHandler::CPostQueue::Post(), CAbstractProjectItem::PostRead(), CVariation_ref::PostRead(), CSrvTime::Print(), CBlastFormat::PrintOneResultSet(), CSeqEntryPresenter::Process(), CAsnvalApp::ProcessCatenated(), CMsvcSite::ProcessMacros(), CGlCgiImageApplication::ProcessRequest(), CAsnvalApp::ProcessSeqEntry(), CAsnvalApp::ProcessSeqSubmit(), CVariationNormalizationRight::ProcessShift(), CBDB_Cache::Purge(), CEntrezDB::Query(), CGlimmerReader::Read(), ReadEntryFromFile(), CImageIO::ReadImage(), CImageIO::ReadImageInfo(), CReadHook_SkipError::ReadObject(), CFormatReadHook::ReadObject(), CImageIO::ReadSubImage(), CGlRenderPdf::Rectf(), CGlRender::Rectf(), CUndoManager::Redo(), CViewManagerService::RegisterFactory(), CLayoutTrack::RegisterIconImage(), CBDB_Cache::RegisterOverflow(), CTableAnnotDataSource::RemoveSeqLocs(), CWindowManagerService::RemoveToolBarContext(), CSeqTestApplication::Render(), CDrawingPanel::Render(), CHitMatrixPane::RenderPdf(), IPhyloTreeRender::RenderPdf(), CSeqGraphicPane::RenderPdf(), wgsparse::ReplaceInTitle(), wgsparse::ReportDateProblem(), CGuard_Base::ReportException(), wgsparse::ReportMissingOrDiffCitSub(), CAsn2Asn::Run(), CAVApp::Run(), CSubImageApp::Run(), CImageDemoApp::Run(), BlastdbCopyApplication::Run(), CGi2TaxIdApp::Run(), CConvImageApp::Run(), CCacheIndexCopyApp::Run(), C5ColExportJob::Run(), CFlatFileExportJob::Run(), CAsnCacheDumpSeqIdsApplication::Run(), CTableDataSUCJob::Run(), CMkIndexApplication::Run(), CSRSearchApplication::Run(), CTableDataValidateJob::Run(), CTextRetrieveJob::Run(), CWalkAsnCacheApplication::Run(), CTestCompartApplication::Run(), CReadIndexSpeedApp::Run(), CTestApplication::Run(), CAgpFastaComparator::Run(), CConcatSeqEntriesApplication::Run(), CObjExtractApp::Run(), CNCBIwxApplication::Run(), CEntrez2ClientApp::Run(), wgsparse::CWGSParseApp::Run(), CDataLoadingAppJob::Run(), CWinMaskApplication::Run(), CBuildAlnVecJob::Run(), CBuildSparseAlnJob::Run(), CEditAppJob::Run(), CNetBlastSubmittingJob::Run(), CProjectServiceTestJob::Run(), CFlatFileSequenceListJob::Run(), CAsnCacheTestApplication::Run(), CAsnvalApp::Run(), CStreamTestApp::Run(), CDemoApp::Run(), CProtIdUpdateApp::Run(), CFeatureRetrievalJob::Run(), CNetBlastMonitoringJob::Run(), CSampleSoapClientApplication::Run(), SGridWorkerNodeImpl::Run(), CMakeProfileDBApp::Run(), CAsn2FlatApp::Run(), CAsnSubCacheCreateApplication::Run(), CClientGenomicCollectionsSvcApplication::RunWithService(), s_AttachAnnotToScope(), s_AttachEntryToScope(), CMixedStrands::s_Blast2NASeq(), s_CallAligner(), s_ConvertSeverity(), s_Create5ColFeatTable(), CBlastArgs::s_CreateBlastOptions(), s_CreateItems(), s_CreateListeningSocket(), s_DetachAnnotFromScope(), s_DetachEntryFromScope(), s_DoAlignmentJob(), s_DoSmartProcessing(), s_ExpandSubNodes(), s_FillModuleListPSAPI(), s_FillModuleListTH32(), s_GetAlignNames(), s_GetCdregionLabel(), s_GetDBTree(), s_GetGeneWeight(), s_GetJoinedAlignment(), s_GetJournalIds(), s_GetLastModified(), s_GetMaskLoc(), s_GetNAAlignNames(), s_GetPubImprint(), s_IsMaskAlgoIdValid(), s_OpenIndexDB(), s_ProcessListenEvent(), s_ProgressCallback(), s_ReadIdsFromFile(), s_ReadPerClientConfig(), s_ReadSpecificParams(), s_ReadVariableParams(), s_ReinitializeStorage(), s_ReportError(), CUpdateSeq_Input::s_RunBlast2AASeq(), CUpdateSeq_Input::s_RunBlast2NASeq(), s_SearchInSeqText(), CAlignCompare::SAlignment::SAlignment(), CGBDocument::Save(), CSearchHelper::SaveAnyFile(), CGlWidgetBase::SaveSettings(), CGlRender::ScaleFactor(), CGlRender::ScaleInvarient(), CPkgManager::ScanPackages(), CGlRender::Scissor(), CClippedScorer::ScoreAlignments(), CDataMiningPanel::SelectToolByName(), CBrowserUtils::SendToBrowser(), CCleanupProcess::SeqEntryProcess(), CInvertProcess::SeqEntryProcess(), CExploreProcess::SeqEntryProcess(), CGeneOverlapProcess::SeqEntryProcess(), CProsplignProcess::SeqEntryProcess(), CValidateProcess::SeqEntryProcess(), CFastaProcess::SeqEntryProcess(), CFlatfileProcess::SeqEntryProcess(), CNullProcess::SeqEntryProcess(), CAgpwriteProcess::SeqEntryProcess(), CTitleProcess::SeqEntryProcess(), CSeqVectorProcess::SeqEntryProcess(), CGeneFeatTreeProcess::SeqEntryProcess(), CVariation_ref::SetAllele_frequency(), CVariation_ref::SetAllele_origin(), CVariation_ref::SetAllele_state(), CPkgManager::SetAppPkg(), CPhyloTreeCalculator::SetAttrTable(), SetDoubleDiagHandler(), CRegistryWriteView::SetField(), CTabularFormatter::SetFormat(), CSeqGlyph::SetHighlightsColor(), CSeq_loc::SetId(), CTableDataSeq_table::SetIntValue(), CVariation_ref::SetIs_ancestral_allele(), CTableDataSeq_table::SetRealValue(), CSearch< LEGACY, NHITS >::SetResult(), CGlRender::SetShader(), CTableDataSeq_table::SetStringValue(), CGlRender::SetTexture(), SetupForUpdate(), CVariation_ref::SetValidated(), CGlRender::ShadeModel(), CUndoManager::ShowErrorMsg(), ShowFeedbackDialog(), CViewManagerService::ShutDownService(), CAlignSort::SortAlignments(), CSearch< LEGACY, NHITS >::Spectrum2Peak(), CUnorderedSplitter::SplitId(), CUnorderedSplitter::SplitLoc(), sReportDSExceptionToLog(), CPerfLogger::Start(), CSearchToolBase::StartSearch(), CSQLITE3_Cache::StoreSynchronous(), TaxonomyLookupCommand(), CGlRender::TexCoord2f(), CObject::ThrowNullPointerException(), CBLASTParams::ToArgVec(), TrackShuttingDown(), CUndoManager::Undo(), CDeflineProcess::UnindexedProcess(), CFeatTableDS::Update(), wgsparse::UpdateBioSource(), CLDS2_Manager::UpdateData(), CSeqUpdateWorker::UpdateMultipleSequences(), CNCBlobAccessor::UpdatePurgeData(), CSeqUpdateWorker::UpdateSingleSequence(), CSymbolGuard::UpdateSymbols(), CDockLayoutTree::CNode::ValidateSplitterSizes(), CValidError_bioseq::ValidateTwintrons(), VectorRemoveElements(), VerifyAlignmentData(), CGlRenderPdf::Vertex3f(), CGlRender::Vertex3f(), CVcfWriter::WriteAnnot(), CTableAnnotDataSource::WriteAsn(), CAsnSubCacheCreateApplication::WriteBlobsInSubCache(), CImageIO::WriteImage(), CImageIO::WriteSubImage(), CGlRender::WriteText(), CGlRenderDebug::WriteText(), CMemberInfoFunctions::WriteWithSetFlagMember(), CMacroFunction_AddorSetContElement::x_AddBioSrcModifier(), CNetBlastSubmittingJob::x_AddError(), CCachedTaxon3::x_AddReplyToCache(), CSelectProjectOptions::x_AddToExistingProject(), CMSAToolJob::x_AddTreeProjectItem(), CLocalFileRestorer::x_AttachNewObject(), CSGGenBankDS::x_BackgroundJob(), CAnnotCompareDS::x_BackgroundJob(), CTar::x_Backspace(), CCleanupApp::x_BasicAndExtended(), CPrimeCacheApplication::x_CacheSeqEntry(), CAlignGlyph::x_CalcIntervals(), CSeqGraphicPane::x_ChangeSwitchPoint(), CPerfLogger::x_CheckValidity(), CAlignCleanup::x_Cleanup_AlignVec(), CAlignCleanup::x_Cleanup_AnchoredAln(), CWinMaskerFileStorage::x_ClearDownloads(), CBamLoadingJob::x_CreateDataLoader(), CSGFeatureJob::x_CreateFeature1(), CEUtilsApp::x_CreateLitRequest(), CNGAlignJob::x_CreateProjectItems(), CBLASTSeqToolJob::x_CreateProjectItems(), CMSAToolJob::x_CreateProjectItems(), CMergeAlignmentsJob::x_CreateProjectItems(), CFindOverlapJob::x_CreateProjectItems(), CEUtilsApp::x_CreateSeqRequest(), CNgAlignApp::x_CreateSequenceSet(), CSeq_align::x_CreateSubsegAlignment(), CEUtilsApp::x_CreateTaxRequest(), CUpdateMultipleSeq_Input::x_CreateUpdateSeqInputForUnitTest(), CAnnotCompareDS::x_DeleteAllJobs(), CBioseqEditor::x_DeleteObject(), CSeqMasterIndex::x_DeltaIndex(), CLocalFileRestorer::x_DetachOrigObject(), CURLTooltipHandler::x_DisplayUnalignedRegion(), CJobQueueCleanerThread::x_DoJob(), CComponentSearchJob::x_DoSearch(), CWinMaskerFileStorage::x_DownloadFiles(), CAlignGlyph::x_DrawMultiAlign(), CAsnSubCacheCreateApplication::x_EliminateIdsAlreadyInCache(), CGFFReader::x_Error(), CQueryParsePanel::x_ExecuteQuery(), CTar::x_ExtractEntry(), CAsnSubCacheCreateApplication::x_FetchMissingBlobs(), CAssemblyInfo::x_FilterTaxIds(), CNCMessageHandler::x_FinishReadingBlob(), CTar::x_Flush(), CFlatGatherer::x_GatherFeatures(), CFlatGatherer::x_GatherFeaturesOnRange(), CFlatGatherer::x_GatherFeaturesOnRangeIdx(), CFlatGatherer::x_GatherFeaturesOnWholeLocation(), CFlatGatherer::x_GatherFeaturesOnWholeLocationIdx(), CProSplignJob::x_GenerateCompartments(), CNAUtils::x_GetAllGIs(), CNAUtils::x_GetAllNAIds(), CNAUtils::x_GetAllNAIdsWithContext(), CAssemblyInfo::x_GetAssmInfo(), CAsnCacheStore::x_GetBlob(), CCreateGeneModelTask::x_GetCommand(), CBioseqEditor::x_GetDeleteCommand(), CTaxonCache::x_GetItem(), CEntrez2ClientApp::x_GetLinked(), CEntrez2ClientApp::x_GetLinks(), CNAUtils::x_GetNAEntrezLinks(), CNAUtils::x_GetNAId(), CBlastDBCmdApp::x_GetOids(), CRelaxedLookupDlg::x_GetPubIds(), CRelaxedLookupDlg::x_GetPubIdsHydra(), CRemoteBlast::x_GetSearchResultsHTTP(), CEntrez2ClientApp::x_GetTermHierarchy(), CEntrez2ClientApp::x_GetTermList(), CEntrez2ClientApp::x_GetTermPos(), CLDS2_Manager::x_GetUrlHandler(), CFeatGlyph::x_GetUserColor(), CAlignDataSource::x_Init(), CSeqMasterIndex::x_Init(), CSeq_loc_Mapper_Base::x_InitAlign(), CGlOsContext::x_InitContext(), CBioseqIndex::x_InitDescs(), CBioseqIndex::x_InitFeats(), CBioseqIndex::x_InitGaps(), CBlastHitMatrix::x_InitGraphics(), CSeqMasterIndex::x_Initialize(), CBioseqIndex::x_InitSource(), CSeq_loc_Mapper_Base::x_InitSpliced(), CEutilsClient::x_Link(), CFileLoader::x_LoadAsnTextOrXml(), CwxNCBIApp::x_LoadGuiRegistry(), CNetBLASTUIDataSource::x_LoadJobDescriptors(), CPkgManager::x_LoadPackage(), CSGSeqGraphJob::x_LoadSeqTable(), CTraceGraphTrack::x_LoadSettings(), CGraphOverlay::x_LoadSettings(), CGraphTrack::x_LoadSettings(), CEpigenomicsTrack::x_LoadSettings(), CFeaturePanel::x_LoadSettings(), CProjectService::x_LoadWorkspace(), CAsnSubCacheCreateApplication::x_LocateBlobsInCache(), CSQLITE3_Statement::x_Log(), CTreeAlignMerger::x_MakeSeqAlign(), CMergeAligner::x_MergeSeqAlignSet(), CInversionMergeAligner::x_MergeSeqAlignSet(), CSegmentMapTrack::x_OnJobCompleted(), CGeneModelTrack::x_OnJobCompleted(), CGraphTrack::x_OnJobCompleted(), CSequenceTrack::x_OnJobCompleted(), CFeatureTrack::x_OnJobCompleted(), CEpigenomicsTrack::x_OnJobCompleted(), CAlignmentTrack::x_OnJobCompleted(), CSixFramesTransTrack::x_OnJobCompleted(), CTrackContainer::x_OnJobCompleted(), CURLTooltipHandler::x_ParseGenomicLinkHref(), CTar::x_ParsePAXData(), CAlnSpanVertModel::x_PopulateRows(), CAgpFastaComparator::x_Process(), CPrimeCacheApplication::x_Process_Fasta(), CPrimeCacheApplication::x_Process_Ids(), CBlastDBCmdApp::x_ProcessBatchEntry(), CBlastDBCmdApp::x_ProcessBatchEntry_NoDup(), CMakeBlastDBApp::x_ProcessInputData(), CMakeBlastDBApp::x_ProcessMaskData(), CBlastDBCmdApp::x_ProcessSearchRequest(), CBlastDBCmdApp::x_ProcessTaxIdList(), CTar::x_ReadAndProcess(), CTar::x_ReadArchive(), CNCMessageHandler::x_ReadAuthMessage(), CNCMessageHandler::x_ReadBlobChunkLength(), CNCMessageHandler::x_ReadBlobSignature(), CNCMessageHandler::x_ReadCommand(), CSparseGraph::x_ReadData(), CTar::x_ReadEntryInfo(), CDockManager::x_ReadLayout(), CUpdateSeq_Input::x_ReadUpdateSeq_ASN(), CUpdateMultipleSeq_Input::x_ReadUpdateSeqs_ASN(), CSeqGraphicPane::x_Render(), CHitMatrixPane::x_RenderContent(), CFastaSeqBlockItem::x_RenderText(), CBioseqEditor::x_ReportError(), CInstancedAligner::x_RunAligner(), CInstancedAligner::x_RunCleanup(), CInstancedAligner::x_RunMMGlobal(), CGBDocument::x_SaveFile(), CNetBLASTUIDataSource::x_SaveJobDescriptors(), CWorkspaceAutoSaver::x_SaveWorkspace(), CEutilsClient::x_Search(), CAssemblyInfo::x_SearchIds(), CCDSTranslationPanel::x_SetLocationForProtein(), CAssemblyListPanel::x_SetTextCompleter(), CSQLITE3_Cache::x_SetTimestamp(), CProSplignJob::x_SetupAndRuntBlastn(), CDataLoadersUtil::x_SetupASNCacheDataLoader(), CVariationNormalization_base< T >::x_Shift(), CWindowManagerService::x_ShowToolBar(), CNCPeerControl::x_SlotsInitiallySynced(), CLayoutTrackHandler::x_StopMoving(), CBDB_Cache::x_Store(), CSparseGraph::x_Sync(), CNCPeerControl::x_UpdateHasTasks(), CViewGraphic::x_UpdateVisRangeLayout(), CDataMiningPanel::x_UpdateWidgetAndTool(), CAssemblyInfo::x_ValidateTaxId(), CAppJobDispatcher::x_VerifyProgressNotNull(), CTar::x_WriteArchive(), CVcfWriter::x_WriteFeature(), CProjectFileWriter::x_WriteObject(), CAlignmentTrack::~CAlignmentTrack(), CAlnVecMultiDataSource::~CAlnVecMultiDataSource(), CBDB_BlobDeMuxPersistent::~CBDB_BlobDeMuxPersistent(), CBDB_BlobSplitStore< TBV, TObjDeMux, TL >::~CBDB_BlobSplitStore(), CBDB_ExtBlobStore< TBV >::~CBDB_ExtBlobStore(), CBuildDatabase::~CBuildDatabase(), CGraphCache< TData, TDataStorage >::~CGraphCache(), CPerfLogger::~CPerfLogger(), CSafeStaticGuard::~CSafeStaticGuard(), CSparseMultiDataSource::~CSparseMultiDataSource(), CSQLITE3_Cache::~CSQLITE3_Cache(), CTaxonCache::~CTaxonCache(), and CWriteDB_Impl::~CWriteDB_Impl().

void Fatal ( CExceptionArgs_Base args)
inline

Definition at line 1053 of file ncbiexpt.hpp.

References eDiag_Fatal, and CExceptionArgs_Base::SetSeverity().

Referenced by CCodeGenerator::AddConfigLine(), boost::assertion_failed(), CScopeTransaction_Impl::Commit(), CDbapiSampleApp::CreateConnection(), CSearchHelper::CreateSearchSettings(), DestinationFile::DestinationFile(), CCodeGenerator::GenerateClientCode(), CCodeGenerator::GenerateCombiningFile(), CFileCode::GenerateCPP(), CCodeGenerator::GenerateFileList(), CFileCode::GenerateHPP(), CCodeGenerator::GenerateModuleCPP(), CCodeGenerator::GenerateModuleHPP(), CDbapiSampleApp::GetDriverContext(), CCodeGenerator::LoadConfig(), CRemoteBlast::LoadFromArchive(), CFileModules::PrintDTDModular(), CFileModules::PrintSampleDEF(), CFileModules::PrintXMLSchemaModular(), CBam2GraphApp::ProcessFile(), CBam2GraphApp::ProcessSrz(), CSearchHelper::ReadFile(), CSearchHelper::ReadModFiles(), CScopeTransaction_Impl::RollBack(), CReadresult::Run(), CSampleObjmgrApplication::Run(), COMSSA::Run(), COMSSAMerge::Run(), CXcompareAnnotsApplication::Run(), s_ConvertSeverity(), CSearch< LEGACY, NHITS >::Search(), CMSPeak::SetComputedCharge(), CSearch< LEGACY, NHITS >::SetIons(), COMSSABase::SetSearchSettings(), CDbapiSimpleApp::SetupDb(), SourceFile::SourceFile(), CSearchHelper::ValidateSearchSettings(), CFileCode::WriteUserFile(), CDownloadJob::x_Download(), CDownloadJob::x_DownloadAndExtract(), CSGAlignStatJob::x_Execute(), CXcompareAnnotsApplication::x_ProcessSeqAlignSetFromFile(), CScopeTransaction::~CScopeTransaction(), and CScopeTransaction_Impl::~CScopeTransaction_Impl().

void Info ( CExceptionArgs_Base args)
inline

Definition at line 1029 of file ncbiexpt.hpp.

References eDiag_Info, and CExceptionArgs_Base::SetSeverity().

Referenced by CDockManager::ActivateClients(), CUIDataSourceService::AddDataSource(), CLDS2_Database::AddFile(), CIndexedDb_New::AddIndexInfo(), CProjectService::AddProjectView(), CBamFileInfo::AddRefSeq(), CCSRAFileInfo::AddRefSeq(), SAccGuide::AddRule(), CAppTaskService::AddTask(), AlignmentDisplay::AlignmentDisplay(), AlignmentSet::AlignmentSet(), CUpdateMultipleSeq_Input::AppendOld_UpdateSeqPairs(), CDockManager::ApplyLayout(), wgsparse::AssignNucAccession(), CMSAToolJob::BeforeRun(), BOOST_AUTO_TEST_CASE(), CProjectTreeBuilder::BuildOneProjectTree(), CSearch< LEGACY, NHITS >::CalcNSort(), CEquivRange::CalcRelative(), CUpdateSeq_Input::CalculateAlignmentForUnitTest(), CAlignSort::CAlignSort(), CTreeQueryExec::CallFunction(), CMacroEngine::CallFunction(), CAppTaskService::CancelTask(), CCassBlobWaiter::CanRestart(), CAV_DisplayMultiple(), CBDB_SplitCursor< BDB_SplitStore, BDB_Vol >::CBDB_SplitCursor(), CBlastDbBioseqSource::CBlastDbBioseqSource(), CCassBlobLoader::CCassBlobLoader(), CGBDocument::CGBDocument(), wgsparse::CheckPubs(), CCassBlobWaiter::CheckReady(), wgsparse::CheckSetOfIds(), CBDB_Env::CleanLog(), CNetBLASTUIDataSource::Close(), CBDB_Cache::Close(), CBam2Seq_graph::CollectCoverage(), CBam2Seq_graph::CollectRawAccessCoverage(), CNcbiTestApplication::CollectTestUnit(), CUnorderedSplitter::CombineAlignments(), CBDB_RawFile::CompactEx(), CompressAssembly(), CLDS2_Database::Create(), wgsparse::CreateAccession(), CBamRefSeqInfo::CreateChunks(), wgsparse::CreateMasterBioseq(), CGBDocument::CreateProjectScope(), CTextPanel::CTextPanel(), DbIndexInit(), CGlFeedbackFont::DecodeText(), DeleteBlastDb(), CLDS2_Database::DeleteFile(), wgsparse::DescrProcUnexpectedSpecial(), CSampleJob::Do(), SDllProjectT::DoCreate(), SAsnProjectMultipleT::DoCreate(), SMsvcProjectT::DoCreate(), CBDB_CheckPointThread::DoJob(), CIndexUpdateThread::DoJob(), CNcbiApplication::DryRun(), AlignmentDisplay::DumpCondensed(), DumpSeqEntries(), CGlUtils::DumpState(), CDumpASNIndex::DumpTiming(), CBioseqEditor::EditSelection(), EnabledDelayBuffers(), CNcbiEnvRegMapper::EnvToReg(), CTableQueryExec::EvalNext(), CTreeQueryExec::EvalNext(), CAddLocs_local::Execute(), CCreateFeatures_local::Execute(), TSL::CTcpWorker< HST::CHttpProto< P >, HST::CHttpConnection< P >, HST::CHttpDaemon< P > >::Execute(), CMacroWorker::ExecuteMacros(), CPhyloTreeDataSource::ExecuteStringQuery(), CProjectStorage::Exists(), CMergeTreeAligner::GenerateAlignments(), CMergeAligner::GenerateAlignments(), CBlastAligner::GenerateAlignments(), CInstancedAligner::GenerateAlignments(), CRemoteBlastAligner::GenerateAlignments(), CSplitSeqAlignMerger::GenerateAlignments(), CDataTool::GenerateCode(), CProjBulderApp::GenerateUnixProjects(), CLoadInfoMap< Key, Info >::Get(), CGlUtils::GetAccelerated(), CSQLITE3_Cache::GetAccessTime(), CSQLITE3_Cache::GetBlobOwner(), CMsvcSite::GetLibInfo(), CGBProjectHandle::GetNextId(), CProjBulderApp::GetProjectTreeInfo(), CProjectView::GetSelection(), CDBPoolBalancer::GetServer(), CSQLITE3_Cache::GetSize(), CNetBLASTUILoadManager::GetTask(), CTaxTreeDS_ObjMgr::GetTaxMap(), CCassConnection::getTokenRanges(), CFormatGuessEx::GuessFormat(), CSampleJobCleanupListener::HandleEvent(), CDB_UserHandler_Diag::HandleIt(), CMessageHandlerDefault::HandleMessage(), CQueryImpl::HasMoreResultSets(), NStr::HtmlEncode(), NAdapterSearch::CPairedEndAdapterDetector::CConsensusPattern::InferConsensus(), CWorkbench::Init(), CFeatureFilter::Init(), CSetupFactory::InitializeMegablastDbIndex(), SNetCacheAPIImpl::InitiateWriteCmd(), CVisibleRangeService::InitService(), CViewManagerService::InitService(), CUIDataSourceService::InitService(), CSelectionService::InitService(), CProjectService::InitService(), CDataMiningService::InitService(), CViewGraphic::InitView(), InsertList(), CTMS_SupportedAssemblies_Client::IsAssemblySupported(), CBamRefSeqInfo::LoadAlignChunk(), CCSRARefSeqInfo::LoadAnnotAlignChunk(), CCSRARefSeqInfo::LoadAnnotMainChunk(), CCSRARefSeqInfo::LoadAnnotPileupChunk(), CSNPDataLoader_Impl::LoadBlob(), CSNPDataLoader_Impl::LoadChunk(), CNcbiApplication::LoadConfig(), CSpectrumSet::LoadDTA(), CRemoteBlast::LoadFromArchive(), CAsnObjectLoader::LoadFromStream(), CCassBlobOp::LoadKeys(), CSpectrumSet::LoadMGF(), CSpectrumSet::LoadMultBlankLineDTA(), CSpectrumSet::LoadMultDTA(), CBamRefSeqInfo::LoadPileupChunk(), CCSRARefSeqInfo::LoadRanges(), CCSRAFileInfo::LoadReadsBlob(), CCSRARefSeqInfo::LoadRefSeqChunk(), CBamRefSeqInfo::LoadSeqChunk(), CObjectListWidgetSel::LoadSettings(), CEditingBtnsPanel::LoadSettings(), CTestApplication::LoadTable(), CTableImportDataSource::LoadTable(), CUIToolRegistry::LoadTemplateToolsInfo(), LogCallback(), CTableImportColumn::LogColumnInfo(), CTableImportDataSource::LogColumnInfo(), CTableDelimiterRules::LogDelims(), CNGAlignParams::LogDump(), CTableImportDataSource::LogFixedFieldWidths(), PT::CItem::LogInstanceCount(), CDockLayoutTree::LogPost(), CDockContainer::LogPostTrees(), LogRequest(), CMacroStat::LogStop(), wgsparse::LookupCommonOrgRefs(), CConnTestThread::Main(), CWorkerNodeIdleThread::Main(), CSQLITE3_Cache::CWriterThread::Main(), CFileCode::ModifiedByUser(), HST::CHttpReply< CPendingOperation >::NeedOutput(), ILineReader::New(), OMSSACallback(), CSeqGraphicDemoDlg::OnAccClick(), CFrameworkDemoGUI::OnActiveClientChanged(), CQueryParsePanel::OnAppJobNotification(), HST::CHttpConnection< CPendingOperation >::OnBeforeClosedConnection(), CFrameworkDemoGUI::OnClientAboutToClose(), CFrameworkDemoGUI::OnClientClosed(), CBioseqEditor::OnCreateBiosourceDesc(), CBioseqEditor::OnCreateBiosourceFeat(), CBioseqEditor::OnCreateDescriptor(), CBioseqEditor::OnCreateFeature(), CSeqGraphicWidget::OnDataChanged(), CFrameworkDemoGUI::OnDiagnosticsTimer(), CBioseqEditor::OnEditBiosourceDesc(), CBioseqEditor::OnEditBiosourceFeat(), CGridControlThread::OnExit(), CWorkerNodeIdleThread::OnExit(), CAuthorNamesPanel::OnImportAuthorsAffiliationHyperlinkClicked(), CFeatureTblFr::OnJobResult(), CMixedStrands::OnJobResult(), CUpdateMultiSeq_Dlg::OnJobResult(), CBioseqEditor::OnPropagateAllFeatures(), CBioseqEditor::OnPropagateSelectedFeatures(), CTaxTreeTestDlg::OnSubmitClick(), CGenBankUIDataSource::Open(), CSQLITE3_Cache::Open(), CNetBLASTUIDataSource::Open(), CBDB_Cache::Open(), CSeqIdChunkFile::OpenForWrite(), CChunkFile::OpenForWrite(), CBDB_Cache::OpenReadOnly(), CAppDialogs::OpenViewlDialog(), visitor_paste_subtree::operator()(), wgsparse::OutputMaster(), wgsparse::OutputSubmission(), CHttpCookie::Parse(), CFeatureFilter::Pass(), PatchTargetSequence(), CCassConnection::Perform(), CAppPopup::PopupURL(), CLogPerformance::Post(), CBLASTParams::PrintParams(), BMAUtils::PrintPSSMForColumn(), CObjectsSniffer::ProbeAny(), CObjectsSniffer::ProbeASN1_Bin(), CObjectsSniffer::ProbeText(), HST::CHttpReply< CPendingOperation >::ProceedCB(), CReadDispatcher::Process(), CBam2GraphApp::ProcessFile(), CProjectTreeBuilder::ProcessMakeDllFile(), CGlCgiImageApplication::ProcessRequest(), CNetCacheBlobFetchApp::ProcessRequest(), CBDB_Cache::Purge(), CGlimmerReader::Read(), CSQLITE3_Cache::Read(), CMSPeak::Read(), CMSPeak::ReadAndProcess(), CMSHit::RecordMatchesScan(), CViewManagerService::RegisterFactory(), CDataMiningService::RegisterTool(), CGlTextureManager::Release(), CSGAlignmentDS::ReleaseMemory(), CFileObsolete::Remove(), CGBDocument::RemoveDataLoader(), wgsparse::RemovePreviousAccession(), wgsparse::ReportDateProblem(), CPhyloTreeDataSource::ReRootMidpoint(), CNcbiArguments::Reset(), CPluginManager< TClass >::ResolveFile(), CFrameworkDemoGUI::RestoreWindowLayout(), CDbapiSimpleApp::RetrieveData(), CRemoteAppClientSampleApp::Run(), CGridClientSampleApp::Run(), CSubImageApp::Run(), BlastdbCopyApplication::Run(), CGi2TaxIdApp::Run(), CConvImageApp::Run(), CAlignTabExportJob::Run(), CAsnExportJob::Run(), CFastaAlignExportJob::Run(), CGtfExportJob::Run(), CPhyExportJob::Run(), C5ColExportJob::Run(), CAgpExportJob::Run(), CFlatFileExportJob::Run(), CGffExportJob::Run(), CMkIndexApplication::Run(), CReadresult::Run(), CWiggleExportJob::Run(), CFastaExportJob::Run(), CWalkAsnCacheApplication::Run(), CTestApplication::Run(), CSeqDescrRetrievalJob::Run(), CSplignApp::Run(), CDataLoadingAppJob::Run(), CEntrez2ClientApp::Run(), CEditAppJob::Run(), CProjBulderApp::Run(), COMSSA::Run(), CProjectServiceTestJob::Run(), CAsnCacheTestApplication::Run(), CAnnotMetaDataJob::Run(), CNgAlignApp::Run(), CBDBEnvKeeperApp::Run(), SGridWorkerNodeImpl::Run(), CSampleIdleTask::Run(), CCreateAlignForUpdateJob::Run(), CAsnSubCacheCreateApplication::Run(), CXcompareAnnotsApplication::Run(), CBDB_Env::RunBackgroundWriter(), s_ConvertSeverity(), s_Create5ColFeatTable(), s_CreateHandler(), s_DeleteDBFile(), s_DoAlignmentJob(), s_Dump(), s_DumpSparse(), s_DumpZero(), CAscii85::s_Encode(), s_GetDBTree(), s_GetNAAlignNames(), s_HTMLEncode(), s_LoadSeqAnnot(), s_LogEnvParam(), TSL::CTcpWorker< HST::CHttpProto< P >, HST::CHttpConnection< P >, HST::CHttpDaemon< P > >::s_LoopWalk(), s_Match_id(), TSL::CTcpWorker< HST::CHttpProto< P >, HST::CHttpConnection< P >, HST::CHttpDaemon< P > >::s_OnAsyncStop(), TSL::CTcpWorker< HST::CHttpProto< P >, HST::CHttpConnection< P >, HST::CHttpDaemon< P > >::s_OnAsyncWork(), TSL::CTcpDaemon< HST::CHttpProto< P >, HST::CHttpConnection< P >, HST::CHttpDaemon< P > >::s_OnMainSigInt(), TSL::CTcpWorker< HST::CHttpProto< P >, HST::CHttpConnection< P >, HST::CHttpDaemon< P > >::s_OnWorkerSigInt(), s_ReportError(), s_SearchInSeqText(), s_SearchTerm(), TSL::CTcpWorkersList< HST::CHttpProto< P >, HST::CHttpConnection< P >, HST::CHttpDaemon< P > >::s_WorkerExecute(), SAccGuide::SAccGuide(), CEditingBtnsPanel::SaveSettings(), CPkgManager::ScanPackages(), CSearch< LEGACY, NHITS >::Search(), CCompareSeqRegions::SelectMatches(), CFeedbackReport::SendFeedback(), CGBenchService::SendFeedbackReport(), SequenceSet::SequenceSet(), CTableImportDataSource::SetColumnHeaderRow(), CTableImportDataSource::SetCommentChar(), CTableImportDataSource::SetFirstImportRow(), CTableImportDataSource::SetHeaderAndFirstRow(), CLoadLockSetter::SetLoaded(), CReaderRequestResult::SetLoadedAcc(), CReaderRequestResult::SetLoadedAccFromSeqIds(), CReaderRequestResult::SetLoadedBlobIds(), CReaderRequestResult::SetLoadedBlobIdsFromZeroGi(), CReaderRequestResult::SetLoadedBlobState(), CReaderRequestResult::SetLoadedBlobVersion(), CReaderRequestResult::SetLoadedGi(), CReaderRequestResult::SetLoadedGiFromSeqIds(), CReaderRequestResult::SetLoadedHash(), CReaderRequestResult::SetLoadedLabel(), CReaderRequestResult::SetLoadedLabelFromSeqIds(), CReaderRequestResult::SetLoadedLength(), CReaderRequestResult::SetLoadedSeqIds(), CReaderRequestResult::SetLoadedSeqIdsFromZeroGi(), CReaderRequestResult::SetLoadedTaxId(), CReaderRequestResult::SetLoadedType(), SetLogFile(), CSearch< LEGACY, NHITS >::SetResult(), CLoadLockSetter::SetSeq_entry(), COMSSABase::SetThreadCount(), ShowFeedbackDialog(), CSchedulerEngine::ShutDown(), CWorkbench::ShutDown(), CVisibleRangeService::ShutDownService(), CViewManagerService::ShutDownService(), CSelectionService::ShutDownService(), CProjectService::ShutDownService(), CDataMiningService::ShutDownService(), CMsvcSite::SLibChoice::SLibChoice(), AlignmentDisplay::Squeeze(), CPendingOperation::Start(), CSearchToolBase::StartSearch(), CSQLITE3_Cache::CWriterThread::Stop(), CBDB_Env::StopBackgroundWriterThread(), HST::CHttpReply< CPendingOperation >::StopCB(), CBDB_Cache::StopPurgeThread(), wgsparse::StripPubComment(), UncomressAndCreate(), CMacroEditor::Update(), CTableDelimitersPanel::UpdateDelimiters(), CAttribTableDelimitersPanel::UpdateDelimiters(), CLDS2_Database::UpdateFile(), CCassBlobTaskInsertExtended::Wait1(), CCassBlobLoader::Wait1(), CCassBlobInserter::Wait1(), CCassBlobDeleter::Wait1(), CNetBLASTUIDataSource::x_AutoStartMonitoring(), CMacroFunction_StringConstraints::x_BuildNoCaseStringConstraint(), CRemoteBlast::x_CheckResultsDC(), CUIDataSourceService::x_CloseDataSources(), CGenollService::x_Connect(), CTableImportWizard::x_ConvertToSeqAnnot(), CQualTableLoadManager::x_ConvertToSeqAnnot(), CSeq_id_Resolver__ChrNamesFromGC::x_Create(), CBamLoadingJob::x_CreateDataLoader(), CFrameworkDemoApp::x_CreateGUI(), CHitMatrixDataSource::x_CreateHit(), CProjectServiceTestJob::x_CreateItems(), CCleanupTool::x_CreateLoadingJob(), CBLASTSeqToolJob::x_CreateProjectItems(), CProSplignJob::x_CreateProjectItems(), CCreateNeedlemanWunschJob::x_CreateProjectItems(), CBamLoadingJob::x_CreateProjectItems(), CFindOverlapJob::x_CreateProjectItems(), CWindowMaskerJob::x_CreateProjectItems(), CNgAlignApp::x_CreateSequenceSet(), CProjectServiceTestJob::x_DeleteItems(), CFrameworkDemoApp::x_DestroyGUI(), CReader::x_DisconnectAtSlot(), CImportFeatTable::x_DoImportFeaturesFromFile(), CProjectTask::x_DoSaveUserSelected(), CComponentSearchJob::x_DoSearch(), CRunToolDlg::x_DoTransition(), CDownloadJob::x_Download(), CDownloadJob::x_DownloadAndExtract(), CSGSegmentMapJob::x_Execute(), CQueryParsePanel::x_ExecuteQuery(), CDataMiningPanel::x_ExecuteSearch(), NAdapterSearch::CUnpairedAdapterDetector::x_FindAdapterSeed(), CVDBValue::x_Get(), CTL_LangCmd::x_GetDynamicID(), CCompareSeqRegions::x_GetPutativeMatches(), CCassBlobLoader::x_GetReadyChunkNo(), CRemoteBlast::x_GetSearchResultsHTTP(), CCorrectRNAStrandDlg::x_GetStatusSMART(), CHitMatrixDataSource::x_GoodSeg(), CTableImportWizard::x_GuessColumns(), CGlWidgetPane::x_Handlers_handle(), CGFFReader::x_Info(), CCassandraException::x_Init(), CUIDataSourceService::x_InitDataSourceTypes(), CUIDataSourceService::x_InitDefaultDataSources(), CRemoteBlast::x_InitDiskCache(), CUnicodeToAsciiTranslation::x_Initialize(), CSNPFileInfo::x_Initialize(), CCSRAFileInfo::x_Initialize(), CSeq_loc_Mapper_Base::x_InitializeLocs(), CUIDataSourceService::x_InitLoadManagers(), CQueryParsePanel::x_IsValidQuery(), CwxNCBIApp::x_LoadGuiRegistry(), CNetBLASTUIDataSource::x_LoadJobDescriptors(), CCassBlobOp::x_LoadKeysScheduleNext(), CPkgManager::x_LoadPackage(), CBamRefSeqInfo::x_LoadRangesCov(), CBamRefSeqInfo::x_LoadRangesScan(), CBamRefSeqInfo::x_LoadRangesStat(), CCSRARefSeqInfo::x_LoadRangesStat(), CProjectService::x_LoadWorkspace(), CProjectServiceTestJob::x_ModifyItems(), CBDB_SplitCursor< BDB_SplitStore, BDB_Vol >::x_NextVolume(), CFeaturePanel::x_OnColorIconClicked(), CFeaturePanel::x_OnDecorationIconClicked(), CFeaturePanel::x_OnLabelIconClicked(), CFeaturePanel::x_OnLayoutIconClicked(), CWorkspaceAutoSaver::x_OnSave(), CFeaturePanel::x_OnSizeIconClicked(), CUIDataSourceService::x_OpenDataSources(), CReadIndexSpeedApp::x_PreReadIndex(), CProjectServiceTestJob::x_PrintItems(), CSequenceUpdater::x_PrintNewEntryIds(), CId2ReaderBase::x_ProcessGetBlob(), CId2ReaderBase::x_ProcessGetSplitInfo(), CBGZFFile::x_ReadBlock(), CTar::x_ReadEntryInfo(), CPagedFile::x_ReadPage(), CScope_Impl::x_ReportNewDataConflict(), CSDB_ConnectionParam::x_ReportOverride(), CProjectServiceTestTask::x_Run(), CNetBlastSubmittingJob::x_Run(), CInstancedAligner::x_RunAligner(), CGBDocument::x_SaveFile(), CwxNCBIApp::x_SaveGuiRegistry(), CNetBLASTUIDataSource::x_SaveJobDescriptors(), CViewGraphic::x_SaveViewSettings(), CFeatureSearchJob::x_SearchFeatures(), CDataLoadersUtil::x_SetupASNCacheDataLoader(), CDataLoadersUtil::x_SetupBlastDataLoader(), CDataLoadersUtil::x_SetupGenbankDataLoader(), CDataLoadersUtil::x_SetupLDS2DataLoader(), CWindowManagerService::x_ShowToolBar(), CWorkbench::x_ShutDownServices(), CQueryParsePanel::x_StartQueryJob(), SGridWorkerNodeImpl::x_StopWorkerThreads(), CBDB_Cache::x_TruncateDB(), CBLASTSearchOptionsPanel::x_UpdateDBCombo(), CPkgManager::x_ValidatePackage(), CReadIndexSpeedApp::x_WalkIndex(), SGridWorkerNodeImpl::x_WNCleanUp(), CSchedulerEngine::x_WorkOnThread(), CDumpASNIndex::x_WriteBlob(), CEditObjectFeaturePropagate::xGetEditCommandAllSequences(), CUCSCRegionReader::xParseFeatureUCSCFormat(), CReader::CDebugPrinter::~CDebugPrinter(), CGBDocument::~CGBDocument(), HST::CHttpProto< CPendingOperation >::~CHttpProto(), HST::CHttpReply< CPendingOperation >::~CHttpReply(), CObjectPool< C >::~CObjectPool(), CSQLITE3_Cache::~CSQLITE3_Cache(), CTaxonCache::~CTaxonCache(), TSL::CTcpWorkersList< HST::CHttpProto< P >, HST::CHttpConnection< P >, HST::CHttpDaemon< P > >::~CTcpWorkersList(), CTextPanel::~CTextPanel(), CTextRetrieveJob::~CTextRetrieveJob(), CWorkerNodeControlServer::~CWorkerNodeControlServer(), and SW::~SW().

const char* Ncbi_strerror ( int  errnum)
CNcbiOstream& operator<< ( CNcbiOstream str,
const CNcbiError err 
)

Serialize error code + description provided by OS + extra string data.

Definition at line 331 of file ncbierror.cpp.

References CNcbiError::Category(), CNcbiError::Code(), CNcbiError::eGeneric, CNcbiError::eMsWindows, CNcbiError::Extra(), CLastErrorAdapt::GetErrCodeString(), CNcbiError::Native(), Ncbi_strerror(), and str().

template<class TErrCode >
CExceptionArgs<TErrCode> operator| ( TErrCode  err_code,
const CExceptionArgsManip manip 
)

Exception manipulators. Can be combined with error code using operator|().

Definition at line 997 of file ncbiexpt.hpp.

template<class TErrCode >
CExceptionArgs<TErrCode> operator| ( TErrCode  err_code,
const CExceptionArgsManip_Wrapper manip 
)

Definition at line 1007 of file ncbiexpt.hpp.

void SetThrowTraceAbort ( bool  abort_on_throw_trace)

Specify whether to call "abort()" inside the DoThrowTraceAbort().

By default, this feature is not activated unless

  • environment variable $ABORT_ON_THROW is set (to any value), or
  • registry value of ABORT_ON_THROW, section DEBUG is set (to any value)

Definition at line 65 of file ncbiexpt.cpp.

References s_DoThrowTraceAbort, and s_DTTA_Initialized.

Referenced by CNcbiApplication::AppMain(), and CNcbiApplication::x_HonorStandardSettings().

void Trace ( CExceptionArgs_Base args)
inline

Definition at line 1023 of file ncbiexpt.hpp.

References eDiag_Trace, and CExceptionArgs_Base::SetSeverity().

Referenced by CCassBlobWaiter::CCassBlobWaiter(), CCassQuery::CCassQuery(), CCassQueryCbRef::CCassQueryCbRef(), CPendingOperation::Clear(), CUvLoop::Close(), CCassConnection::Close(), CVariationUtilities::CorrectRefAllele(), CEutilsClient::Count(), CCassQueryCbRef::Detach(), HST::CHttpReply< CPendingOperation >::DoSend(), CBLASTToolManager::DoTransition(), gen_bitlen(), CCassQuery::GetFuture(), CCassBlobOp::GetSetting(), CCassConnection::getTokenRanges(), inflate(), CUvTcp::InternalClose(), CCassQuery::InternalClose(), InternalLoadKeys_ondata(), CCassConnectionFactory::LoadConfig(), CRemoteBlast::LoadFromArchive(), CCassBlobOp::LoadKeys(), CStdAnnotTypes::LoadTypes(), LogCallback(), CCassQuery::NextRow(), CFrameworkDemoGUI::OnDiagnosticsTimer(), CSeqVectorCache::PrefetchSequence(), CCassConnection::Prepare(), CCassQuery::ProcessFutureResult(), CCassConnectionFactory::ProcessParams(), CVariationNormalizationLeft::ProcessShift(), CVariationNormalizationDelIns::ProcessShift(), CVariationNormalizationRight::ProcessShift(), CCassQuery::Query(), CCassConnectionFactory::ReloadConfig(), RequestToString(), s_ConvertSeverity(), CCassQueryCbRef::s_OnFutureCb(), SSignalHandler::s_WatchCtrlCPressed(), CCassBlobWaiter::SetDataReadyCB(), CCassQuery::SetupOnDataCallback(), CUvLoop::Stop(), CUvTcp::StopRead(), CCassBlobOp::UpdateSetting(), CCassQuery::Wait(), CCassBlobLoader::Wait1(), CCassBlobInserter::Wait1(), CCassBlobDeleter::Wait1(), SAsyncData_rec_t::WaitAsync(), CWindowMaskerJob::x_CreateProjectItems(), CVariationUtilities::x_FixAlleles(), CAlignFilter::x_GetAlignmentScore(), CCachedTaxon3::x_GetReplyForOrgRef(), CTMS_DisplayTrack_Client::x_HttpFetch(), CEutilsClient::x_LinkOut(), CCassBlobOp::x_LoadKeysScheduleNext(), CCassBlobLoader::x_RequestChunk(), CEutilsClient::x_Search(), CVariationNormalization_base< T >::x_Shift(), CEutilsClient::x_Summary(), CCassBlobWaiter::~CCassBlobWaiter(), CCassConnection::~CCassConnection(), CCassQuery::~CCassQuery(), CCassQueryCbRef::~CCassQueryCbRef(), CPendingOperation::~CPendingOperation(), CUvLoop::~CUvLoop(), and CUvTcp::~CUvTcp().

template<class TTo , class TFrom >
const TTo* UppermostCast ( const TFrom &  from)

Return valid pointer to uppermost derived class only if "from" is _really_ the object of the desired type.

Do not cast to intermediate types (return NULL if such cast is attempted).

Definition at line 1104 of file ncbiexpt.hpp.

void Warning ( CExceptionArgs_Base args)
inline

Definition at line 1035 of file ncbiexpt.hpp.

References eDiag_Warning, and CExceptionArgs_Base::SetSeverity().

Referenced by CThreadPool_Impl::Abort(), CTextJoiner< num_prealloc, TIn, TOut >::Add(), CSeqsRange::Add(), CCompoundRWRegistry::Add(), CGapAnalysis::AddBioseqGaps(), CQueueClientInfoList::AddClientInfo(), CFeature_table_reader_imp::AddFeatQual(), SAccGuide::AddRule(), AlignmentSet::AlignmentSet(), CCyclicDepends::AnalyzeProjItemNew(), CNcbiApplication::AppMain(), CNCBlobKey::Assign(), CSerialObject::Assign(), CAdminCmdProcessor::Authenticate(), CCgiResponse::BeginPart(), CGlBuffer20< T >::BufferData(), CGlBuffer11< T >::BufferData(), CGlBuffer20< T >::BufferDataResize(), CGlBuffer11< T >::BufferDataResize(), WSDLParser::BuildDataTree(), CRelocateCallback::Callback(), CQueue::CancelSelectedJobs(), CQueue::CancelWaitGet(), CQueue::CancelWaitRead(), CDBPoolBalancer::CDBPoolBalancer(), CQueue::ChangeAffinity(), CheckBinaryTruncation(), wgsparse::CheckBioSource(), CNCActiveHandler::CheckCommandTimeout(), wgsparse::CheckDBName(), CheckForFreqRatioFile(), wgsparse::CheckMasterDblink(), wgsparse::CheckMetagenomes(), CDataTypeModule::CheckNames(), wgsparse::CheckOrganisms(), wgsparse::CheckPubs(), wgsparse::CheckScaffoldsFarPointers(), wgsparse::CheckSeqEntry(), wgsparse::CheckSetOfIds(), CheckStringTruncation(), CIgAnnotationInfo::CIgAnnotationInfo(), CQueueDataBase::Close(), CBDB_Cache::Close(), CArg_Ios::CloseFile(), CBam2Seq_graph::CollectCoverage(), CRemoteAppReaper::CContext::CollectorImpl(), CBam2Seq_graph::CollectRawAccessCoverage(), CCodeGenerator::CollectTypes(), NWinHook::COnExitProcess::COnExitProcess(), CICacheCF< CNetICacheClient >::ConfigureICache(), CICacheCF< CNetICacheClient >::ConfigureTimeStamp(), CBlastDBAliasApp::ConvertGiFile(), pub_report::ConvertPMCtoPMID(), CEutilsClient::Count(), CMSModSpecSet::CreateArrays(), CSeqMaskerOstatOpt::createCacheBitArray(), CGradientColorPanel::CreateControls(), SMakeProjectT::CreateIncludeDirs(), CSQLITE3_BlobCacheCF::CreateInstance(), CDBAPI_BlobCacheCF::CreateInstance(), CBlobStorageFactory::CreateInstance(), wgsparse::CreateMasterBioseq(), wgsparse::CreateMasterBioseqWithChecks(), CNCPeerControl::CreateNewSocket(), CAlignCleanup::CreatePairwiseFromMultiple(), CProtSeqlocHelper::CreateSeqloc(), CDeltaHelper::CreateSSR(), CSafeStaticLifeSpan::CSafeStaticLifeSpan(), CSeqMaskerIstatOBinary::CSeqMaskerIstatOBinary(), CSmallDNS::CSmallDNS(), CTLibContext::CTLIB_srverr_handler(), CVDBGraphDb_Impl::CVDBGraphDb_Impl(), CWriteDB_ConsolidateAliasFiles(), wgsparse::DBLinkProblemReport(), wgsparse::DescrProcUnexpected(), wgsparse::DescrProcUnexpectedSpecial(), wgsparse::DescrProcUnexpectedWarning(), SAsnProjectSingleT::DoCreate(), pub_report::DoHydraSearch(), CAlignGlyph::DrawPWAlignElem(), CLDS2_ObjectParser::EndBlob(), CTreeFiller::Execute(), CProjectStorage::Exists(), CObjectIStreamAsnBinary::ExpectStringTag(), CFormattingArgs::ExtractAlgorithmOptions(), CMTArgs::ExtractAlgorithmOptions(), SMakeProjectT::ExtractConfigurableDefine(), CQueue::FailJob(), CRgbaGradColorTable::FillGradient(), CAppRegistry::Find(), CSeq_id_not_set_Tree::FindMatch(), CSeq_id_not_set_Tree::FindReverseMatch(), CTestDispatcher::Fire(), CTestDispatcher::FireFirst(), NStr::FormatVarargs(), CBlastAligner::GenerateAlignments(), CRemoteBlastAligner::GenerateAlignments(), CClientPseudoTypeStrings::GenerateClassCode(), CProjBulderApp::GenerateUnixProjects(), CBlast4Field::Get(), CSGAlignmentDS::GetAlignType(), CGencollSvc::GetAssmsInfo(), ChemicalGraph::GetAtomInfo(), Molecule::GetAtomInfo(), Residue::GetAtomInfo(), CNCPeerControl::GetBGConn(), CSplitQueryBlk::GetChunkOverlapSize(), HST::CHttpRequest::GetClientIP(), CNetScheduleGetJobImpl< TImpl >::GetJobImmediately(), ICitationBase::GetLabel(), CMsvcSite::GetLibInclude(), CGuiObjectInfoSeq_align::GetLinks(), CSmallDNS::GetLocalHost(), CDB_Object::GetLogString(), CProjectItem::GetObject(), CProjectStorage::GetObject(), StructureBase::GetParentOfType(), CPMCIDConverterServer::GetPmids(), GetProcessFDCount(), CRefArgs::GetQueryString(), CVarTrackFactory::GetSettings(), CSegmentMapTrackFactory::GetSettings(), CSequenceTrackFactory::GetSettings(), CSixFramesTransTrackFactory::GetSettings(), CFeatureTrackFactory::GetSettings(), CAlignmentTrackFactory::GetSettings(), CFeatGlyph::GetSignature(), CSysPath::GetStdPath(), CImage::GetSubImage(), CDirEntry::GetTmpName(), IAlnGraphicDataSource::GetUnalignedTails(), IntegerSpinCtrl::GetUnsignedInteger(), CArgErrorHandler::HandleError(), CSDB_UserHandler::HandleMessage(), CNcbiRegistry::IncludeNcbircIfAllowed(), CSeq_align_Mapper_Base::InitExon(), CNCSyncLog::Initialize(), CIdMapperConfig::Initialize(), CSrvSocketTask::InternalRunSlice(), CTMS_SupportedAssemblies_Client::IsAssemblySupported(), SNetServiceImpl::IterateUntilExecOK(), CStdPoolOfThreads::KillAllThreads(), CAlignmentTrack::LayoutStrToValue(), CCodeGenerator::LoadConfig(), CDataTool::LoadDefinitions(), CRemoteBlast::LoadFromArchive(), CId1Reader::LoadGiBlob_ids(), CwxTableListCtrl::LoadTableSettings(), LogCallback(), CThreadInPool_ForServer::Main(), CThreadInPool< TRequest >::Main(), CDBConnectionFactory::MakeValidConnection(), CLocMapper_Default::Map(), CSeq_loc_Mapper_Base::Map(), CGlBuffer20< T >::MapBuffer(), CGlBuffer11< T >::MapBuffer(), MemoryAdvise(), NCBITEST_INIT_TREE(), CNormalizeVariant::NormalizeIdentityInstance(), CDirEntry::NormalizePath(), CWNJobWatcher::Notify(), CNetStorageHandler::OnClose(), CFrameworkDemoGUI::OnDiagnosticsTimer(), CNetScheduleHandler::OnError(), CTestReceiver::OnEventReceipt(), CTestDispatcher::OnEventReceipt(), CwxTableListCtrl::OnPaint(), CNetStorageHandler::OnRead(), CNetCacheServerListener::OnWarningImpl(), CNetScheduleServerListener::OnWarningImpl(), CNetStorageServerListener::OnWarningImpl(), CBDB_Volumes::Open(), CBDB_Cache::Open(), CReader::OpenInitialConnection(), PLibExclude::operator()(), PIsExcludedByProjectMakefile::operator()(), CBioseq::PackAsDeltaSeq(), CSeq_id::ParseIDs(), XSDParser::ParseList(), JSDParser::ParseNode(), XSDParser::ParseUnion(), wgsparse::PerformLookup(), CServer_ConnectionPool::PingControlConnection(), CMessageListener_Stack::PopListener(), CValidError_imp::PostErr(), CFastaReader::PostWarning(), CObjectManagerEngine::PrefetchNotify(), CQueue::PrintAllJobDbStat(), CRemoteAppClientSampleApp::PrintJobInfo(), CBlastFormat::PrintOneResultSet(), CPdf::PrintQuadBuffer(), CShutdownProcessor::Process(), CReadDispatcher::Process(), CProjBulderApp::ProcessLocationMacros(), CMsvcSite::ProcessMacros(), CDataTool::ProcessModules(), ProjectExon(), CBDB_Cache::Purge(), CGlRender::PushAttrib(), SWorkerNodeJobContextImpl::PutProgressMessage(), SNetStorageServerParameters::Read(), CBioTreeAttrReader::Read(), SNSDBEnvironmentParams::Read(), CBamIndex::Read(), CRepeatLibrary::Read(), CSearchHelper::ReadCompleteSearch(), impl::CDriverContext::ReadDBConfParams(), CSrvSocketTask::ReadLine(), CSearchHelper::ReadModFiles(), ReadObject(), CSearchHelper::ReadSearchRequest(), CFeature_table_reader::ReadSequinFeatureTables(), RecoverSearchStrategy(), CObjectManager::RegisterDataLoader(), RemoteBlastDbLoader_ErrorHandler(), CDiagContextThreadData::RemoveCollectGuard(), CServer_ConnectionPool::RemoveListener(), wgsparse::ReplaceOldCitSub(), tracker::report_match(), CODBC_Reporter::ReportErrors(), wgsparse::ReportLackOfDBLinkData(), wgsparse::ReportNewDBLinkData(), wgsparse::ReportNewDBLinkDataAll(), wgsparse::ReportVersionProblem(), CNcbiArguments::Reset(), CSymResolver::Resolve(), SRelLoc::Resolve(), CDbapiSimpleApp::RetrieveData(), pub_report::CUnpublishedReport::RetrievePMid(), CQueue::ReturnJob(), CNSSubmitRollback::Rollback(), CNSBatchSubmitRollback::Rollback(), CNSGetJobRollback::Rollback(), CNSReadJobRollback::Rollback(), CRemoteAppClientSampleApp::Run(), CGridClientSampleApp::Run(), CMkIndexApplication::Run(), CTblastxApp::Run(), CTblastnApp::Run(), CBlastnApp::Run(), CBlastpApp::Run(), CBlastxApp::Run(), CRPSBlastApp::Run(), CRPSTBlastnApp::Run(), wgsparse::CWGSParseApp::Run(), CPsiBlastApp::Run(), CDeltaBlastApp::Run(), CBuildAlnVecJob::Run(), CIdMapperTestApp::Run(), CAsnCacheTestApplication::Run(), CMagicBlastApp::Run(), CNgAlignApp::Run(), CTestDispatchApp::Run(), CBDBEnvKeeperApp::Run(), CSearchJobBase::Run(), CWig2tableApplication::Run(), CAsnSubCacheCreateApplication::Run(), CBDB_Env::RunBackgroundWriter(), CHydraServer::RunHydraSearch(), s_BuildAlignDataSource(), s_ConvertSeverity(), s_GetDiskSpace_PANFS(), s_ImportSearchStrategy(), s_ParseErrCodeInfoStr(), s_ProcessCellLineLine(), s_ProcessECNumberLine(), s_ProcessListenEvent(), s_ReadFromSocket(), s_ReportDependenciesStatus(), s_ScanRecursive(), s_SetContainerData(), s_SetPrimitiveData(), s_UnpackPrimitiveField(), s_ValidateSeqLiteral(), s_VerifySeqidlist(), s_WriteToSocket(), CPkgManager::ScanPackages(), CSearch< LEGACY, NHITS >::Search(), CSeqGraphicPane::SelectSeqLoc(), CRemoteAppRequest::Send(), CSeq_id::Set(), CBDB_FieldString::Set(), CSeqMaskerIstat::set_min_count(), CDiagContext::SetAppState(), CDbapiConnMgr::SetConnectionFactory(), CTrackUtils::SetError(), CObjectOStreamXml::SetFormattingFlags(), CObjectOStream::SetFormattingFlags(), CReader::SetMaximumConnections(), CSearch< LEGACY, NHITS >::SetResult(), CRequestContext::SetSessionID(), CDiagContext::SetupDiag(), SetupSubjects_OMF(), CArgDescriptions::SetUsageContext(), CObjectOStream::SetVerifyDataGlobal(), CObjectOStream::SetVerifyDataThread(), SourceToProduct(), CSeq_loc_Mapper_Base::sx_GetExonPartLength(), CSynRegistry::TGet(), CBLASTParams::ToArgVec(), TrackShuttingDown(), CEUtilsGeneric::TryQuery(), DTDParser::TypesBlock(), NWinHook::CHookedFunctions::UnHookAllFuncs(), CGlBuffer20< T >::UnmapBuffer(), wgsparse::UpdateBioSource(), wgsparse::UpdateMasterForExtra(), CSDBAPI::UpdateMirror(), CGeneModelConfig::UpdateSettings(), CSQLITE3_Cache::Vacuum(), CValidError_imp::Validate(), CSearchHelper::ValidateSearchSettings(), CCassBlobLoader::Wait1(), CReader::WaitBeforeNewConnection(), CPMCIDConverterServer::warning(), CHydraServer::warning(), CEUtilsGeneric::warning(), CPluginManager< TClass >::WillExtendCapabilities(), CConversionApp::Write(), CObjectOStream::AsnIo::Write(), CFastaOstreamEx::WriteFeature(), CCgiResponse::WriteHeader(), NWinHook::CApiHookMgr::x_AddHook(), CCachedTaxon3::x_AddReplyToCache(), CScope_Impl::x_AddSynonym(), CBlastDBAliasApp::x_AddVDBsToAliasFile(), CReader::x_AllocConnection(), CTar::x_Append(), CTar::x_Backspace(), CNetScheduleHandler::x_CheckGetParameters(), CFeatureGenerator::SImplementation::x_CheckInconsistentDbxrefs(), CQueueDataBase::x_CheckOpenPreconditions(), CNetScheduleHandler::x_CheckReadParameters(), CNCActiveSyncControl::x_CheckSlotTheirSync(), CBlastTabularInfo::x_CheckTaxDB(), CAlignCleanup::x_Cleanup_AnchoredAln(), CNCMessageHandler::x_CloseOnPeerError(), CNSClientId::x_ConvertToClaimedType(), CBamLoadingJob::x_CreateDataLoader(), CBLASTSeqToolJob::x_CreateProjectItems(), CMergeAlignmentsJob::x_CreateProjectItems(), CNaSeqlocHelper::x_CreateSeqloc(), CId2Reader::x_DisconnectAtSlot(), CPubseq2Reader::x_DisconnectAtSlot(), CId1Reader::x_DisconnectAtSlot(), CPubseqReader::x_DisconnectAtSlot(), CReader::x_DisconnectAtSlot(), CNCMessageHandler::x_DoCmd_SyncStart(), CAlignGlyph::x_DrawMultiAlign(), CSGSegmentSmearJob::x_Execute(), CTar::x_ExtractEntry(), CEutilsClient::x_Fetch(), CNetScheduleHandler::x_FinalizeReadCommand(), CGencollIdMapper::x_FindParentSequence(), CPhrapReader::x_FindSeq(), CSpaceShrinker::x_FinishMoves(), CNCMessageHandler::x_FinishReadingBlob(), CEutilsClient::x_Get(), CSGAlignmentJob::x_GetAlignments(), CDeflineGenerator::x_GetModifiers(), CMainLoopThread::x_GetNextJob(), CBasicManifest_CI< TString >::x_GetNextValue(), CPromote::x_GetProductId(), CReportEntry::x_GetRCoordinate(), CPsiBlastInputData::x_GetSubjectSequence(), CNcbiApplication::x_HonorStandardSettings(), NWinHook::CApiHookMgr::x_HookSystemFuncs(), CSeq_id::x_IdentifyAccession(), CSeq_align_Mapper_Base::x_Init(), CNcbiRegistry::x_Init(), CSeq_loc_Mapper_Base::x_InitAlign(), TestUtil::CBlastOM::x_InitBlastDatabaseDataLoader(), CBlastScopeSource::x_InitBlastDatabaseDataLoader(), TestUtil::CBlastOM::x_InitGenbankDataLoader(), CBlastScopeSource::x_InitGenbankDataLoader(), CSeq_loc_Mapper_Base::x_InitializeLocs(), CSeq_loc_Mapper_Base::x_InitSparse(), CBlastAppArgs::x_IssueWarningsForIgnoredOptions(), CEutilsClient::x_Link(), CEutilsClient::x_LinkOut(), CSGAlignStatJob::x_LoadAlignments(), CAlignmentTrack::x_LoadAlignmentSettings(), CSeqGraphicConfig::x_LoadFeatSettings(), CNcbiEncrypt::x_LoadKeys(), CPkgManager::x_LoadPackage(), CSnpTrack::x_LoadSettings(), CSegmentMapTrack::x_LoadSettings(), CSequenceTrack::x_LoadSettings(), CFeatureTrack::x_LoadSettings(), CAlignmentTrack::x_LoadSettings(), CSixFramesTransTrack::x_LoadSettings(), CNCMessageHandler::x_LogCmdLog(), CSeq_loc_Mapper_Base::x_MapInterval(), CReportEntry::x_MapPos(), CAlnSpanVertModel::x_MergeRows(), SNSCommandArguments::x_NormalizeErrorMessage(), CNetStorageHandler::x_OnMessage(), CViewGraphic::x_OnSetSelection(), CBDB_Env::x_Open(), CTar::x_Open(), CGFFReader::x_ParseFeatRecord(), CLDS2_Manager::x_ParseFile(), CTar::x_ParsePAXData(), CAlnSpanVertModel::x_PopulateRows(), CFastaDeflineReader::x_PostWarning(), CSrvSocketTask::x_PrintError(), CNetScheduleHandler::x_PrintGetJobResponse(), CAnnotObject_Info::x_ProcessAlign(), CNetScheduleHandler::x_ProcessCancel(), CNetScheduleHandler::x_ProcessChangeAffinity(), CNetScheduleHandler::x_ProcessDump(), CNetScheduleHandler::x_ProcessFastStatusS(), CNetScheduleHandler::x_ProcessFastStatusW(), CId2ReaderBase::x_ProcessGetBlob(), CNetScheduleHandler::x_ProcessGetMessage(), CProtIdUpdateApp::x_ProcessInputTable(), CNetScheduleHandler::x_ProcessJobDelayExpiration(), CNetScheduleHandler::x_ProcessJobDelayReadExpiration(), CNetScheduleHandler::x_ProcessJobExchange(), CNetScheduleHandler::x_ProcessListenJob(), CNCActiveHandler::x_ProcessPeerError(), CNetScheduleHandler::x_ProcessPut(), CNetScheduleHandler::x_ProcessPutFailure(), CNetScheduleHandler::x_ProcessPutMessage(), CNetScheduleHandler::x_ProcessRedo(), CNetScheduleHandler::x_ProcessReread(), CNetScheduleHandler::x_ProcessReschedule(), CNetScheduleHandler::x_ProcessReturn(), CNetScheduleHandler::x_ProcessSetClientData(), CNetScheduleHandler::x_ProcessStatus(), CGridClient::x_ProlongBlobLifetime(), CNCMessageHandler::x_ProxyToNextPeer(), CAlignFilter::x_Query_Op(), IRWRegistry::x_Read(), CTar::x_ReadAndProcess(), CTar::x_ReadArchive(), CNCMessageHandler::x_ReadAuthMessage(), CBGZFFile::x_ReadBlock(), CNCMessageHandler::x_ReadCommand(), CNcbiTestApplication::x_ReadConfiguration(), CTar::x_ReadEntryInfo(), CCgiEntryReaderContext::x_ReadMultipartHeaders(), CCgiEntryReaderContext::x_ReadURLEncodedEntry(), CObjectManager::x_RegisterLoader(), CNetScheduleHandler::x_RemoveDuplicateStatuses(), CSDB_ConnectionParam::x_ReportOverride(), CEutilsClient::x_Search(), CAnnot_Collector::x_SearchMapped(), CEnvironmentRegistry::x_Set(), CEnvironmentRegistry::x_SetComment(), CRequestContext::x_SetHitID(), CDataLoadersUtil::x_SetupASNCacheDataLoader(), CDataLoadersUtil::x_SetupLDS2DataLoader(), CTar::x_Skip(), CPhrapReader::x_SkipTag(), CNCMessageHandler::x_StartCommand(), CEutilsClient::x_Summary(), CException::x_ThrowSanityCheck(), CSysLog::x_TranslateFlags(), CTraversalPatternMatchCallback::x_TryToAttachPattern(), CTraversalPatternMatchCallback::x_TryToDeprecatePatternMatchers(), CQueue::x_UpdateDB_PutResultNoLock(), CAlnSpanVertModel::x_UpdateMetaData(), CNCMessageHandler::x_WaitForPeerAnswer(), CGFFReader::x_Warn(), CVcfWriter::x_WriteFeature(), CNCMessageHandler::x_WriteInitWriteResponse(), CProteinMatchApp::x_WriteMatchTable(), CNetStorageDApp::x_WritePid(), CNetScheduleDApp::x_WritePid(), CSGSegmentSmearJob::x_WriteToCache(), CAutoTrans::~CAutoTrans(), CDB_UserHandler_Deferred::~CDB_UserHandler_Deferred(), CFileDeleteList::~CFileDeleteList(), NWinHook::CHookedFunction::~CHookedFunction(), CPoolOfThreads< TRequest >::~CPoolOfThreads(), CPoolOfThreads_ForServer::~CPoolOfThreads_ForServer(), and CSQLITE3_Cache::~CSQLITE3_Cache().

Modified on Sun May 20 14:15:42 2018 by modify_doxy.py rev. 546573