NCBI C++ ToolKit
Public Member Functions | Static Public Member Functions | Public Attributes | List of all members
CTracebackTestFixture Class Reference

Search Toolkit Book for CTracebackTestFixture

+ Collaboration diagram for CTracebackTestFixture:

Public Member Functions

 CTracebackTestFixture ()
 
 ~CTracebackTestFixture ()
 
void x_SetupMain (const CBlastOptions &opt, const CBLAST_SequenceBlk &query_blk, const CBlastQueryInfo &query_info)
 
void x_SetupGapAlign (const CBlastOptions &opt, const BlastSeqSrc *seq_src, const CBlastQueryInfo &query_info)
 
void x_ComputeTracebak (const CBlastOptions &opt, BlastHSPStream *hsp_stream, const CBLAST_SequenceBlk &query_blk, const CBlastQueryInfo &query_info, const BlastSeqSrc *seq_src, BlastHSPResults **results)
 

Static Public Member Functions

static BlastHSPStreamx_MakeStream (const CBlastOptions &opt)
 

Public Attributes

BlastScoreBlkm_ScoreBlk
 
BlastSeqLocm_LookupSegments
 
Blast_Messagem_BlastMessage
 
BlastScoringParametersm_ScoreParams
 
BlastExtensionParametersm_ExtParams
 
BlastHitSavingParametersm_HitParams
 
BlastEffectiveLengthsParametersm_EffLenParams
 
BlastGapAlignStructm_GapAlign
 

Detailed Description

Definition at line 87 of file traceback_unit_test.cpp.

Constructor & Destructor Documentation

CTracebackTestFixture::CTracebackTestFixture ( )
inline

Definition at line 100 of file traceback_unit_test.cpp.

References NULL.

CTracebackTestFixture::~CTracebackTestFixture ( )
inline

Member Function Documentation

void CTracebackTestFixture::x_ComputeTracebak ( const CBlastOptions opt,
BlastHSPStream hsp_stream,
const CBLAST_SequenceBlk query_blk,
const CBlastQueryInfo query_info,
const BlastSeqSrc seq_src,
BlastHSPResults **  results 
)
inline
static BlastHSPStream* CTracebackTestFixture::x_MakeStream ( const CBlastOptions opt)
inlinestatic
void CTracebackTestFixture::x_SetupGapAlign ( const CBlastOptions opt,
const BlastSeqSrc seq_src,
const CBlastQueryInfo query_info 
)
inline
void CTracebackTestFixture::x_SetupMain ( const CBlastOptions opt,
const CBLAST_SequenceBlk query_blk,
const CBlastQueryInfo query_info 
)
inline

Member Data Documentation

Blast_Message* CTracebackTestFixture::m_BlastMessage

Definition at line 92 of file traceback_unit_test.cpp.

BlastEffectiveLengthsParameters* CTracebackTestFixture::m_EffLenParams

Definition at line 96 of file traceback_unit_test.cpp.

BlastExtensionParameters* CTracebackTestFixture::m_ExtParams

Definition at line 94 of file traceback_unit_test.cpp.

BlastGapAlignStruct* CTracebackTestFixture::m_GapAlign

Definition at line 97 of file traceback_unit_test.cpp.

BlastHitSavingParameters* CTracebackTestFixture::m_HitParams

Definition at line 95 of file traceback_unit_test.cpp.

BlastSeqLoc* CTracebackTestFixture::m_LookupSegments

Definition at line 91 of file traceback_unit_test.cpp.

BlastScoreBlk* CTracebackTestFixture::m_ScoreBlk

Definition at line 90 of file traceback_unit_test.cpp.

BlastScoringParameters* CTracebackTestFixture::m_ScoreParams

Definition at line 93 of file traceback_unit_test.cpp.


The documentation for this class was generated from the following file:
Modified on Sun Dec 17 15:52:27 2017 by modify_doxy.py rev. 546573