Search Toolkit Book for CConcatSeqEntriesApplication
Inheritance diagram for CConcatSeqEntriesApplication:
Collaboration diagram for CConcatSeqEntriesApplication:
Private Member Functions | |
| virtual void | Init (void) |
| Initialize the application. More... | |
| virtual int | Run (void) |
| Run the application. More... | |
| virtual void | Exit (void) |
| Cleanup on application exit. More... | |
Additional Inherited Members | |
| Public Types inherited from CNcbiApplicationAPI | |
| enum | EAppNameType { eBaseName , eFullName , eRealName } |
| Public Member Functions inherited from CNcbiApplication | |
| virtual | ~CNcbiApplication (void) |
| Destructor. More... | |
| CNcbiApplication (const SBuildInfo &build_info=NCBI_SBUILDINFO_DEFAULT()) | |
| Constructor. More... | |
| Public Member Functions inherited from CNcbiApplicationAPI | |
| CNcbiApplicationAPI (const SBuildInfo &build_info) | |
| Constructor. More... | |
| virtual | ~CNcbiApplicationAPI (void) |
| Destructor. More... | |
| int | AppMain (int argc, const char *const *argv, const char *const *envp=0, EAppDiagStream diag=eDS_Default, const char *conf=NcbiEmptyCStr, const string &name=NcbiEmptyString) |
| Main function (entry point) for the NCBI application. More... | |
| virtual int | DryRun (void) |
| Test run the application. More... | |
| const CNcbiArguments & | GetArguments (void) const |
| Get the application's cached unprocessed command-line arguments. More... | |
| virtual const CArgs & | GetArgs (void) const |
| Get parsed command line arguments. More... | |
| const CNcbiEnvironment & | GetEnvironment (void) const |
| Get the application's cached environment. More... | |
| CNcbiEnvironment & | SetEnvironment (void) |
| Get a non-const copy of the application's cached environment. More... | |
| void | SetEnvironment (const string &name, const string &value) |
| Set a specified environment variable by name. More... | |
| bool | HasLoadedConfig (void) const |
| Check if the config file has been loaded. More... | |
| bool | FinishedLoadingConfig (void) const |
| Check if the application has finished loading config file (successfully or not). More... | |
| const CNcbiRegistry & | GetConfig (void) const |
| Get the application's cached configuration parameters (read-only). More... | |
| CNcbiRegistry & | GetConfig (void) |
| const string & | GetConfigPath (void) const |
| Get the full path to the configuration file (if any) we ended up using. More... | |
| bool | ReloadConfig (CMetaRegistry::TFlags flags=CMetaRegistry::fReloadIfChanged, IRegistry::TFlags reg_flags=IRegistry::fWithNcbirc) |
| Reload the configuration file. More... | |
| SIZE_TYPE | FlushDiag (CNcbiOstream *os, bool close_diag=false) |
| Flush the in-memory diagnostic stream (for "eDS_ToMemory" case only). More... | |
| const string & | GetProgramDisplayName (void) const |
| Get the application's "display" name. More... | |
| const string & | GetProgramExecutablePath (EFollowLinks follow_links=eIgnoreLinks) const |
| Get the application's executable path. More... | |
| CVersionInfo | GetVersion (void) const |
| Get the program version information. More... | |
| const CVersionAPI & | GetFullVersion (void) const |
| Get the program version information. More... | |
| bool | IsDryRun (void) const |
| Check if it is a test run. More... | |
| virtual bool | SetupDiag_AppSpecific (void) |
| Setup application specific diagnostic stream. More... | |
| template<class TFunc > | |
| void | AddOnExitAction (TFunc func) |
| Add callback to be executed from CNcbiApplicationAPI destructor. More... | |
| Static Public Member Functions inherited from CNcbiApplication | |
| static CNcbiApplication * | Instance (void) |
| Singleton method. More... | |
| Static Public Member Functions inherited from CNcbiApplicationAPI | |
| static CNcbiApplicationAPI * | Instance (void) |
| Singleton method. More... | |
| static CNcbiApplicationGuard | InstanceGuard (void) |
| Singleton method. More... | |
| static SSystemMutex & | GetInstanceMutex (void) |
| Mutex for application singleton object. More... | |
| static string | GetAppName (EAppNameType name_type=eBaseName, int argc=0, const char *const *argv=NULL) |
| Protected Types inherited from CNcbiApplicationAPI | |
| enum | EPreparseArgs { ePreparse_Continue , ePreparse_Exit } |
| Result of PreparseArgs() More... | |
| enum | EDisableArgDesc { fDisableStdArgs = 0x01 } |
| Disable argument descriptions. More... | |
| enum | EHideStdArgs { fHideLogfile = CArgDescriptions::fHideLogfile , fHideConffile = CArgDescriptions::fHideConffile , fHideVersion = CArgDescriptions::fHideVersion , fHideFullVersion = CArgDescriptions::fHideFullVersion , fHideDryRun = CArgDescriptions::fHideDryRun , fHideHelp = CArgDescriptions::fHideHelp , fHideFullHelp = CArgDescriptions::fHideFullHelp , fHideXmlHelp = CArgDescriptions::fHideXmlHelp , fHideAll = CArgDescriptions::fHideAll } |
| Which standard flag's descriptions should not be displayed in the usage message. More... | |
| enum | EStdioSetup { fNoSyncWithStdio = 0x01 , fDefault_CinBufferSize = 0x02 , fBinaryCin = 0x04 , fBinaryCout = 0x08 , fDefault_SyncWithStdio = 0x00 } |
| Flags to adjust standard I/O streams' behaviour. More... | |
| enum | EExitMode { eNoExits , eExceptionalExits , eAllExits } |
| When to return a user-set exit code. More... | |
| enum | EAppFlags { fSkipSafeStaticDestroy = 1 << 0 } |
| typedef int | TDisableArgDesc |
| Binary OR of "EDisableArgDesc". More... | |
| typedef int | THideStdArgs |
| Binary OR of "EHideStdArgs". More... | |
| typedef int | TStdioSetupFlags |
| Binary OR of "EStdioSetup". More... | |
| typedef int | TAppFlags |
| Protected Member Functions inherited from CNcbiApplicationAPI | |
| virtual EPreparseArgs | PreparseArgs (int argc, const char *const *argv) |
| Check the command line arguments before parsing them. More... | |
| void | DisableArgDescriptions (TDisableArgDesc disable=fDisableStdArgs) |
| void | HideStdArgs (THideStdArgs hide_mask) |
| Set the hide mask for the Hide Std Flags. More... | |
| void | SetStdioFlags (TStdioSetupFlags stdio_flags) |
| Adjust the behavior of standard I/O streams. More... | |
| void | SetVersion (const CVersionInfo &version) |
| Set the version number for the program. More... | |
| void | SetVersion (const CVersionInfo &version, const SBuildInfo &build_info) |
| void | SetVersionByBuild (int major) |
| void | SetFullVersion (CRef< CVersionAPI > version) |
| Set version data for the program. More... | |
| virtual void | SetupArgDescriptions (CArgDescriptions *arg_desc) |
| Setup the command line argument descriptions. More... | |
| const CArgDescriptions * | GetArgDescriptions (void) const |
| Get argument descriptions (set by SetupArgDescriptions) More... | |
| bool | SetupDiag (EAppDiagStream diag) |
| Setup the application diagnostic stream. More... | |
| virtual bool | LoadConfig (CNcbiRegistry ®, const string *conf, CNcbiRegistry::TFlags reg_flags) |
| Load settings from the configuration file to the registry. More... | |
| virtual bool | LoadConfig (CNcbiRegistry ®, const string *conf) |
| Load settings from the configuration file to the registry. More... | |
| CNcbiRegistry & | GetRWConfig (void) |
| Get the application's cached configuration parameters, accessible for read-write for an application's internal use only. More... | |
| void | SetProgramDisplayName (const string &app_name) |
| Set program's display name. More... | |
| virtual void | AppStart (void) |
| Method to be called before application start. More... | |
| virtual void | AppStop (int exit_code) |
| Method to be called before application exit. More... | |
| void | SetExitCode (int exit_code, EExitMode when=eExceptionalExits) |
| Force the program to return a specific exit code later, either when it exits due to an exception or unconditionally. More... | |
| void | SetAppFlags (TAppFlags flags) |
| void | ExecuteOnExitActions () |
| Should only be called from the destructors of classes derived from CNcbiApplicationAPI - if it is necessary to access their data members and virtual methods; or to dynamic_cast<> from the base app class. More... | |
| void | SetPhoneHomePolicy (IPhoneHomePolicy *policy, ENcbiOwnership ownership=eNoOwnership) |
| Set Phone Home Policy. More... | |
| IPhoneHomePolicy * | GetPhoneHomePolicy () const |
| Return pointer to current Phone Home Policy or NULL. More... | |
| Static Protected Member Functions inherited from CNcbiApplicationAPI | |
| static CRWLock & | GetInstanceLock (void) |
| static string | FindProgramExecutablePath (int argc, const char *const *argv, string *real_path=0) |
| Find the application's executable file. More... | |
Detailed Description
Definition at line 60 of file concat_seqentries.cpp.
Member Function Documentation
◆ Exit()
|
privatevirtual |
Cleanup on application exit.
Perform cleanup before exiting. The default behavior of this is "do nothing". If you have special cleanup logic that needs to be performed, then you must override this method with your own logic.
Reimplemented from CNcbiApplicationAPI.
Definition at line 170 of file concat_seqentries.cpp.
References SetDiagStream().
◆ Init()
|
privatevirtual |
Initialize the application.
The default behavior of this is "do nothing". If you have special initialization logic that needs to be peformed, then you must override this method with your own logic.
Reimplemented from CNcbiApplicationAPI.
Definition at line 75 of file concat_seqentries.cpp.
References CArgDescriptions::eInputFile, CArgDescriptions::eOutputFile, CNcbiApplicationAPI::GetArguments(), and CNcbiApplicationAPI::SetupArgDescriptions().
◆ Run()
|
privatevirtual |
Run the application.
It is defined as a pure virtual method – so you must(!) supply the Run() method to implement the application-specific logic.
- Returns
- Exit code.
Implements CNcbiApplicationAPI.
Definition at line 99 of file concat_seqentries.cpp.
References DumpSeqEntries(), ERR_POST, Error(), CDir::Exists(), CNcbiApplicationAPI::GetArgs(), CDirEntry::GetPath(), CDirEntry::IsDir(), CStopWatch::Start(), and sw.
The documentation for this class was generated from the following file:
- src/app/asn_cache/concat_seqentries.cpp
