Caenorhabditis elegansXR129.
TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
SUMMARY back to top
.
Wormbase predicts one model
.

AceView synopsis, each blue text links to tables and details
The gene contains 2 distinct gt-ag introns. Transcription produces one mRNA. 44 bp of this gene are antisense to spliced gene XR128, raising the possibility of regulated alternate expression.
No phenotype has yet been reported to our knowledge: this gene's in vivo function is yet unknown.
The spliced mRNA putatively encodes a good protein, containing Protein of unknown function DUF1258 domain [Pfam], a coiled coil stretch [Psort2].

Please quote: AceView: a comprehensive cDNA-supported gene and transcripts annotation, Genome Biology 2006, 7(Suppl 1):S12.
Map on chromosome X, links to other databases and other names
Map: This gene XR129 maps on chomosome X at position +22.78 (interpolated). In AceView, it covers 0.36 kb, from 16515821 to 16516179 (WS190), on the direct strand.
Links to: WormBase, RNAiDB.
Other names: The gene is also known in Wormbase by its cosmid.number name T25D1.2.
Closest AceView homologs in other species ?
The closest A.thaliana gene, according to BlastP, is the AceView gene AT5G60620 (e=0.26)
          Complete gene on genome diagram: back to top
Please choose between the zoomable GIF version., and the HTML5/SVG version.
This diagram shows in true scale the gene on the genome, the mRNAs and the cDNA clones.
Compact gene diagram back to top
Gene XR129 5' 3' encoded on plus strand of chromosome X from 16,515,821 to 16,516,179 a 500bp 0 56 bp exon 56 bp exon 46 bp [gt-ag] intron 1 GenBank accession 84 bp exon 43 bp [gt-ag] intron 1 GenBank accession 130 bp exon 2 accessions 130 bp exon Alternative mRNAs are shown aligned from 5' to 3' on a virtual genome where introns have been shrunk to a minimal length. Exon size is proportional to length, intron height reflects the number of cDNAs supporting each intron, the small numbers show the support of the introns in deep sequencing (with details in mouse-over) . Introns of the same color are identical, of different colors are different. 'Good proteins' are pink, partial or not-good proteins are yellow, uORFs are green. 5' cap or3' poly A flags show completeness of the transcript.
Read more...
Sequences: click on the numbers to get the DNA back to top
mRNA variant mRNA matching the genome Best predicted protein Upstream sequence Transcription
unit
pre-mRNA
Downstream sequence
a 270 bp 89 aa 2kb 359 bp 1kb

Gene neighbors and Navigator on chromosome X back to top
XR115 C XR119 C XR129 C ztf-19 D C R P XR113 XR133 XR135 XR137 XR139 XR116 5kb 0 XR115, 1 accession XR119, 0 accession XR129, 2 accessions ztf-19, 27 accessions 3 variants XR113, 2 accessions XR133, 4 accessions XR135, 0 accession XR137, 0 accession XR139, 0 accession XR116, 0 accession XR120, 11 accessions, 2 variants XR128, 3 accessions, 2 variants ZOOM OUT                 D:disease, C:conserved, I:interactions, R:regulation, P:publications         Read more...
Annotated mRNA diagrams back to top
? Gene Summary Gene on genome mRNA Expression Tissue Function, regulation, related genes C

To mine knowledge about the gene, please click the 'Gene Summary' or the 'Function, regulation, related genes ' tab at the top of the page. The 'Gene Summary' page includes all we learnt about the gene, functional annotations of neighboring genes, maps, links to other sites and the bibliography. The 'Function, regulation, related genes ' page includes Diseases (D), Pathways, GO annotations, conserved domains (C), interactions (I) reference into function, and pointers to all genes with the same functional annotation.
To see the mRNA diagram, sequence and annotation, click the 'mRNA' tab. To examine expression data from all cDNAs clustered in this gene by AceView, click the 'Expression tissue'.

If you know more about this gene, or found errors, please share your knowledge. Thank you !