AceView: Gene:TMPRSS13, a comprehensive annotation of human, mouse and worm genes with mRNAs or ESTsAceView.

Alternative mRNAs are shown aligned from 5' to 3' on a virtual genome where introns have been shrunk to a minimal length. Exon size is proportional to length, intron height reflects the number of cDNAs supporting each intron, the small numbers show the support of the introns in deep sequencing (with details in mouse-over) . Introns of the same color are identical, of different colors are different. 'Good proteins' are pink, partial or not-good proteins are yellow, uORFs are green. 5' cap or3' poly A flags show completeness of the transcript.
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cDNA accession Links to the sequence	Tissue most 5' clones in red	Match mRNA	From bp to bp in mRNA	From bp to bp in accs.	Clone encodes complete protein (with AA variation)	Features	Anomalies detected by AceView	Accession match over (% length)	Base differences relative to genome (% identity)
AB048796	lung	.a	1 to 2363	14 to 2361	Q83R R88L P91L A92S L93R ...	tiling clone, AAA		2348/2361 (99 %)	13 diff (99.5 %id)
AB048797	lung	.d	1 to 3267	14 to 3291	R88Q L93R L96P S97A R98L ...	tiling clone, AAA		3278/3291 (99 %)	22 diff (99.4 %id)
AI909842	breast	.b	1115 to 1400	286 to 1				286/286 (100 %)	6 diff (98.0 %id)
AK027798	placenta	.e	1 to 2189	1 to 2192	exact	tiling clone, available from FLJ,		2192/2192 (100 %)	6 diff (99.8 %id)
AK300283	placenta	.b	96 to 2045	1 to 1950	D510G	tiling clone,		1950/1950 (100 %)	8 diff (99.6 %id)
AW845106	colon	.b	1115 to 1399	1 to 285				285/285 (100 %)	0 diff (100 %id)
AY190317		.c	1 to 2167	8 to 2159	Q83R R88L P91L A92S L93R ...	tiling clone, AAA		2159/2159 (100 %)	12 diff (99.5 %id)
BC114928	PCR rescued clones	.b	80 to 3360	7 to 3272	Q83R R88L P91L A92S L93R ...			3266/3272 (99 %)	4 diff (99.9 %id)
BE073527	breast	.b	847 to 1036	1 to 190				190/190 (100 %)	1 diff (99.5 %id)
BE828740	lung_tumor	.b	2445 to 2797	15 to 367		tiling clone,		353/377 (93 %)	28 diff (92.6 %id)
BF757610	colon	.b	672 to 910	1 to 239				239/255 (93 %)	1 diff (99.7 %id)
BF757611	colon	.b	672 to 910	1 to 239				239/254 (94 %)	1 diff (99.7 %id)
BF757612	colon	.b	672 to 910	1 to 239				239/252 (94 %)	0 diff (100 %id)
BF987243	placenta_normal	.e	2033 to 2530	25 to 525		tiling clone,		501/525 (95 %)	6 diff (98.9 %id)
BX094217	breast	.b	2730 to 3452	1 to 723		tiling clone, AAA		723/723 (100 %)	2 diff (99.8 %id)
CA406437	adipose	.b	853 to 1187	1 to 331				331/333 (99 %)	13 diff (96.1 %id)
CA406482	adipose	.b	933 to 1142	1 to 210				210/210 (100 %)	1 diff (99.6 %id)
CB270010	adipose	.e	792 to 1386	1 to 595				595/595 (100 %)	1 diff (99.9 %id)
CD633580		.i	1 to 377	1 to 377	E96K	tiling clone,		377/378 (99 %)	5 diff (98.7 %id)
CD633581		.i	3 to 377	375 to 1		tiling clone,		375/377 (99 %)	1 diff (99.8 %id)
CN335419	embryonic stem cells, DMSO-treated H9 cellline	.j	1 to 364	1 to 364	exact	tiling clone,		364/364 (100 %)	0 diff (100 %id)
CN423986	embryonic stem cells, DMSO-treated H9 cellline	.b	2584 to 3307	1 to 724				724/724 (100 %)	7 diff (99.1 %id)
CR596543	Placenta Cot 25-normalized	.e	111 to 2139	1 to 2029		tiling clone,		2029/2029 (100 %)	0 diff (100 %id)
CR613669	Placenta Cot 25-normalized	.e	111 to 1582	1 to 1472				1472/1472 (100 %)	0 diff (100 %id)
BX356692	Placenta Cot 25-normalized	.e	1089 to 2139	1055 to 1		fully sequenced,		1055/1055 (100 %)	7 diff (99.4 %id)
BX356693	Placenta Cot 25-normalized	.e	325 to 1119	200 to 988		fully sequenced,		988/988 (100 %)	5 diff (99.5 %id)
BX337187	Placenta Cot 25-normalized	.b	87 to 955	12 to 878				572/878 (65 %)	30 diff (96.6 %id)
BX373408	Placenta Cot 25-normalized	.b	2754 to 3445	694 to 5				690/857 (80 %)	0 diff (100 %id)
BX337409	Placenta Cot 25-normalized	.e	596 to 1540	945 to 1				945/945 (100 %)	10 diff (99.0 %id)
BX337410	Placenta Cot 25-normalized	.b	388 to 1009	200 to 821				821/821 (100 %)	2 diff (99.8 %id)
BX389632	Placenta Cot 25-normalized	.e	808 to 1582	1 to 777				777/777 (100 %)	7 diff (99.1 %id)
DC346216	tongue, tumor tissue	.b	58 to 635	1 to 578				578/578 (100 %)	3 diff (99.5 %id)
DA445009	tongue, tumor tissue	.b	62 to 639	2 to 579		capped		578/578 (100 %)	5 diff (99.2 %id)
DC347986	tongue, tumor tissue	.b	59 to 628	1 to 570				570/570 (100 %)	2 diff (99.7 %id)
DC348283	tongue, tumor tissue	.b	59 to 621	1 to 563				563/563 (100 %)	3 diff (99.5 %id)
DC348356	tongue, tumor tissue	.b	30 to 601	1 to 572				572/572 (100 %)	2 diff (99.7 %id)
CV383224	placenta_normal	.e	2049 to 2530	1 to 486				486/486 (100 %)	3 diff (99.4 %id)
BX952562		.b	80 to 719	1 to 640				640/640 (100 %)	4 diff (99.4 %id)
DC358589	lung	.b	59 to 667	1 to 609				609/609 (100 %)	1 diff (99.9 %id)
DC358641	lung	.b	59 to 595	1 to 537				537/538 (99 %)	2 diff (99.7 %id)
R78581	placenta	.e	998 to 1229	1 to 236		fully sequenced,	Submitted on the opposite strand	236/236 (100 %)	3 diff (98.8 %id)
R78582	placenta	.e	1169 to 1579	437 to 23		fully sequenced, AAA	Submitted on the opposite strand	415/415 (100 %)	9 diff (97.9 %id)
H45484	breast	.b	2730 to 3184	1 to 462				462/468 (98 %)	21 diff (95.6 %id)
H45485	breast	.b	3257 to 3436	180 to 1				180/180 (100 %)	1 diff (99.5 %id)
AI820898	ovarian tumor, ovary	.e	1219 to 1809	1 to 591				591/591 (100 %)	0 diff (100 %id)
AA284966	ovarian tumor, ovary	.e	1787 to 2186	416 to 14		AAA		403/403 (100 %)	4 diff (99.1 %id)
AA285124	ovarian tumor, ovary	.e	1219 to 1603	1 to 384				384/384 (100 %)	1 diff (99.8 %id)
AA401923	ovarian tumor, ovary	.e	1841 to 2186	359 to 11		AAA		349/349 (100 %)	4 diff (98.9 %id)
AA402094	ovarian tumor, ovary	.e	1221 to 1456	1 to 235				235/235 (100 %)	1 diff (99.6 %id)
AI820925	ovarian tumor, ovary	.e	1219 to 1818	1 to 600				600/600 (100 %)	0 diff (100 %id)
AI821676	ovarian tumor, ovary	.e	1691 to 2186	509 to 11		AAA		499/499 (100 %)	8 diff (98.4 %id)
AA890464	parathyroid gland, parathyroid tumor	.b	3144 to 3452	320 to 13		AAA		308/308 (100 %)	2 diff (99.4 %id)
AI073437	pooled	.b	3027 to 3452	438 to 13		AAA		426/427 (99 %)	1 diff (99.8 %id)
AI130693	heart	.b	3055 to 3453	399 to 1				399/399 (100 %)	2 diff (99.5 %id)
AI188331	placenta	.b	2976 to 3453	480 to 3				478/480 (99 %)	0 diff (100 %id)
AI863446	brain, tumor, 5 pooled (see description)	.b	3132 to 3452	360 to 40		fully sequenced, AAA		321/321 (100 %)	1 diff (99.7 %id)
BE048222	brain, tumor, 5 pooled (see description)	.b	2868 to 3162	1 to 295		fully sequenced,		295/295 (100 %)	1 diff (99.7 %id)
AI768987	pooled	.b	3074 to 3452	391 to 13		AAA		379/379 (100 %)	2 diff (99.5 %id)
AW014913		.b	3006 to 3454	464 to 16		tiling clone, AAA		449/450 (99 %)	1 diff (99.8 %id)
AW291378		.b	2909 to 3454	561 to 18		AAA		544/544 (100 %)	6 diff (98.9 %id)
AW439114	serous papillary carcinoma, high grade, 2pooled tumors, uterus	.e	1981 to 2184	210 to 3				208/210 (99 %)	0 diff (100 %id)
BF515309		.b	3178 to 3454	292 to 16		AAA		277/277 (100 %)	2 diff (99.3 %id)
BE732381	choriocarcinoma, placenta	.b	822 to 1659	1 to 834				834/834 (100 %)	21 diff (97.5 %id)
BG680250	skin, squamous cell carcinoma	.b	2670 to 3401	1 to 731				731/731 (100 %)	2 diff (99.8 %id)
BU558176	adenocarcinoma, cell line, breast	.b	394 to 1057	1 to 667				667/1043 (63 %)	7 diff (99.4 %id)
BU860003	adenocarcinoma, cell line, breast	.b	394 to 1099	1 to 715				713/915 (77 %)	19 diff (98.0 %id)
BU957076	adenocarcinoma, cell line, breast	.b	394 to 1141	1 to 753				753/930 (80 %)	9 diff (99.1 %id)
NM_001077263.1		.b	61 to 3451	1 to 3391	exact	RefSeq,		3391/3391 (100 %)	0 diff (100 %id)
BP315554	mammary gland	.b	29 to 626	1 to 583				583/583 (100 %)	3 diff (99.5 %id)
BP315772	mammary gland	.g	1 to 599	1 to 583	Q83R R88L P91L A92S L93R ...	tiling clone,		583/583 (100 %)	2 diff (99.7 %id)
DA830024	placenta	.e	2 to 756	2 to 768		capped		767/851 (90 %)	18 diff (97.9 %id)
DB375013	placenta	.e	1663 to 2189	530 to 1				530/530 (100 %)	11 diff (98.0 %id)
DA848528	placenta	.b	73 to 656	2 to 586		capped		583/585 (99 %)	2 diff (99.7 %id)
DC381398	placenta	.b	96 to 628	1 to 533				533/533 (100 %)	1 diff (99.9 %id)
DC381405	placenta	.b	1 to 541	1 to 541		tiling clone,		541/541 (100 %)	3 diff (99.5 %id)
BP319980	placenta	.b	73 to 661	1 to 589				589/596 (98 %)	3 diff (99.5 %id)
BM793246	Ascites, stomach	.b	2801 to 3203	1 to 404				404/404 (100 %)	7 diff (98.3 %id)
DN998208	breast cancer, Mammary gland (cancer tissue)	.b	72 to 779	1 to 693				693/693 (100 %)	5 diff (99.3 %id)
BP356834	mammary gland	.h	1 to 581	1 to 582	exact	tiling clone,		582/582 (100 %)	8 diff (98.7 %id)
BP359643	mammary gland	.b	63 to 653	1 to 579				579/579 (100 %)	7 diff (98.8 %id)
TI_157599395		.b	2957 to 3452	596 to 101		AAA		496/556 (89 %)	29 diff (94.8 %id)
DB223460	trachea	.b	63 to 636	2 to 575		capped		574/574 (100 %)	3 diff (99.5 %id)
BU753471	placenta	.b	2665 to 3454	802 to 16		AAA		787/791 (99 %)	5 diff (99.4 %id)
CF529107	placenta	.b	3203 to 3452	267 to 18		AAA		250/250 (100 %)	1 diff (99.6 %id)
CA313327	Human Lung Epithelial cells, lung	.f	1 to 668	689 to 18	H79L S191L F192I S195P L196F ...	tiling clone, AAA	Internal priming: the 3' end of the oligo dT primed clone lies in the CDS	672/694 (96 %)	2 diff (99.8 %id)
BU732653	eye, optic nerve	.b	2954 to 3452	517 to 19		AAA		499/508 (98 %)	1 diff (99.9 %id)
DB290424	uterus	.b	63 to 651	2 to 590		capped		589/589 (100 %)	1 diff (99.9 %id)
BC018715	Placenta, choriocarcinoma	.e	1663 to 2189	530 to 1		available from MGC, AAA	Suspected internal deletion, this clone was ignored	530/530 (100 %)	11 diff (98.0 %id)
DA848528	placenta	.b	73 to 656	2 to 586		capped		583/585 (99 %)	2 diff (99.7 %id)
DC381398	placenta	.b	96 to 628	1 to 533				533/533 (100 %)	1 diff (99.9 %id)
DC381405	placenta	.b	1 to 541	1 to 541		tiling clone,		541/541 (100 %)	3 diff (99.5 %id)
BP319980	placenta	.b	73 to 661	1 to 589				589/596 (98 %)	3 diff (99.5 %id)
BM793246	Ascites, stomach	.b	2801 to 3203	1 to 404				404/404 (100 %)	7 diff (98.3 %id)
BM793246	Ascites, stomach	.b	2801 to 3203	1 to 404				404/404 (100 %)	7 diff (98.3 %id)
DN998208	breast cancer, Mammary gland (cancer tissue)	.b	72 to 779	1 to 693				693/693 (100 %)	5 diff (99.3 %id)
DN998208	breast cancer, Mammary gland (cancer tissue)	.b	72 to 779	1 to 693				693/693 (100 %)	5 diff (99.3 %id)
BP356834	mammary gland	.h	1 to 581	1 to 582	exact	tiling clone,		582/582 (100 %)	8 diff (98.7 %id)
BP359643	mammary gland	.b	63 to 653	1 to 579				579/579 (100 %)	7 diff (98.8 %id)
TI_157599395		.b	2957 to 3452	596 to 101		AAA		496/556 (89 %)	29 diff (94.8 %id)
DB223460	trachea	.b	63 to 636	2 to 575		capped		574/574 (100 %)	3 diff (99.5 %id)
BU753471	placenta	.b	2665 to 3454	802 to 16		AAA		787/791 (99 %)	5 diff (99.4 %id)
CF529107	placenta	.b	3203 to 3452	267 to 18		AAA		250/250 (100 %)	1 diff (99.6 %id)
CA313327	Human Lung Epithelial cells, lung	.f	1 to 668	689 to 18	H79L S191L F192I S195P L196F ...	tiling clone, AAA	Internal priming: the 3' end of the oligo dT primed clone lies in the CDS	672/694 (96 %)	2 diff (99.8 %id)
CA313327	Human Lung Epithelial cells, lung	.f	1 to 668	689 to 18	H79L S191L F192I S195P L196F ...	tiling clone, AAA	Internal priming: the 3' end of the oligo dT primed clone lies in the CDS	672/694 (96 %)	2 diff (99.8 %id)
BU732653	eye, optic nerve	.b	2954 to 3452	517 to 19		AAA		499/508 (98 %)	1 diff (99.9 %id)
BU732653	eye, optic nerve	.b	2954 to 3452	517 to 19		AAA		499/508 (98 %)	1 diff (99.9 %id)
DB290424	uterus	.b	63 to 651	2 to 590		capped		589/589 (100 %)	1 diff (99.9 %id)