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Gene TMPRSS13TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
81 supporting clones for gene TMPRSS13 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AB048796 lung .a 1 to 2363 14 to 2361 Q83R R88L P91L A92S L93R ... tiling clone, AAA   2348/2361
(99 %)
13 diff
(99.5 %id)
AB048797 lung .d 1 to 3267 14 to 3291 R88Q L93R L96P S97A R98L ... tiling clone, AAA   3278/3291
(99 %)
22 diff
(99.4 %id)
AI909842 breast .b 1115 to 1400 286 to 1       286/286
(100 %)
6 diff
(98.0 %id)
AK027798 placenta .e 1 to 2189 1 to 2192 exact tiling clone, available from FLJ,   2192/2192
(100 %)
6 diff
(99.8 %id)
AK300283 placenta .b 96 to 2045 1 to 1950 D510G tiling clone,   1950/1950
(100 %)
8 diff
(99.6 %id)
AW845106 colon .b 1115 to 1399 1 to 285       285/285
(100 %)
0 diff
(100 %id)
AY190317   .c 1 to 2167 8 to 2159 Q83R R88L P91L A92S L93R ... tiling clone, AAA   2159/2159
(100 %)
12 diff
(99.5 %id)
BC114928 PCR rescued clones .b 80 to 3360 7 to 3272 Q83R R88L P91L A92S L93R ...     3266/3272
(99 %)
4 diff
(99.9 %id)
BE073527 breast .b 847 to 1036 1 to 190       190/190
(100 %)
1 diff
(99.5 %id)
BE828740 lung_tumor .b 2445 to 2797 15 to 367   tiling clone,   353/377
(93 %)
28 diff
(92.6 %id)
BF757610 colon .b 672 to 910 1 to 239       239/255
(93 %)
1 diff
(99.7 %id)
BF757611 colon .b 672 to 910 1 to 239       239/254
(94 %)
1 diff
(99.7 %id)
BF757612 colon .b 672 to 910 1 to 239       239/252
(94 %)
0 diff
(100 %id)
BF987243 placenta_normal .e 2033 to 2530 25 to 525   tiling clone,   501/525
(95 %)
6 diff
(98.9 %id)
BX094217 breast .b 2730 to 3452 1 to 723   tiling clone, AAA   723/723
(100 %)
2 diff
(99.8 %id)
CA406437 adipose .b 853 to 1187 1 to 331       331/333
(99 %)
13 diff
(96.1 %id)
CA406482 adipose .b 933 to 1142 1 to 210       210/210
(100 %)
1 diff
(99.6 %id)
CB270010 adipose .e 792 to 1386 1 to 595       595/595
(100 %)
1 diff
(99.9 %id)
CD633580   .i 1 to 377 1 to 377 E96K tiling clone,   377/378
(99 %)
5 diff
(98.7 %id)
CD633581   .i 3 to 377 375 to 1   tiling clone,   375/377
(99 %)
1 diff
(99.8 %id)
CN335419 embryonic stem cells, DMSO-treated H9 cellline .j 1 to 364 1 to 364 exact tiling clone,   364/364
(100 %)
0 diff
(100 %id)
CN423986 embryonic stem cells, DMSO-treated H9 cellline .b 2584 to 3307 1 to 724       724/724
(100 %)
7 diff
(99.1 %id)
CR596543 Placenta Cot 25-normalized .e 111 to 2139 1 to 2029   tiling clone,   2029/2029
(100 %)
0 diff
(100 %id)
CR613669 Placenta Cot 25-normalized .e 111 to 1582 1 to 1472       1472/1472
(100 %)
0 diff
(100 %id)
BX356692 Placenta Cot 25-normalized .e 1089 to 2139 1055 to 1   fully sequenced,   1055/1055
(100 %)
7 diff
(99.4 %id)
BX356693 Placenta Cot 25-normalized .e 325 to 1119 200 to 988   fully sequenced,   988/988
(100 %)
5 diff
(99.5 %id)
BX337187 Placenta Cot 25-normalized .b 87 to 955 12 to 878       572/878
(65 %)
30 diff
(96.6 %id)
BX373408 Placenta Cot 25-normalized .b 2754 to 3445 694 to 5       690/857
(80 %)
0 diff
(100 %id)
BX337409 Placenta Cot 25-normalized .e 596 to 1540 945 to 1       945/945
(100 %)
10 diff
(99.0 %id)
BX337410 Placenta Cot 25-normalized .b 388 to 1009 200 to 821       821/821
(100 %)
2 diff
(99.8 %id)
BX389632 Placenta Cot 25-normalized .e 808 to 1582 1 to 777       777/777
(100 %)
7 diff
(99.1 %id)
DC346216 tongue, tumor tissue .b 58 to 635 1 to 578       578/578
(100 %)
3 diff
(99.5 %id)
DA445009 tongue, tumor tissue .b 62 to 639 2 to 579   capped   578/578
(100 %)
5 diff
(99.2 %id)
DC347986 tongue, tumor tissue .b 59 to 628 1 to 570       570/570
(100 %)
2 diff
(99.7 %id)
DC348283 tongue, tumor tissue .b 59 to 621 1 to 563       563/563
(100 %)
3 diff
(99.5 %id)
DC348356 tongue, tumor tissue .b 30 to 601 1 to 572       572/572
(100 %)
2 diff
(99.7 %id)
CV383224 placenta_normal .e 2049 to 2530 1 to 486       486/486
(100 %)
3 diff
(99.4 %id)
BX952562   .b 80 to 719 1 to 640       640/640
(100 %)
4 diff
(99.4 %id)
DC358589 lung .b 59 to 667 1 to 609       609/609
(100 %)
1 diff
(99.9 %id)
DC358641 lung .b 59 to 595 1 to 537       537/538
(99 %)
2 diff
(99.7 %id)
R78581 placenta .e 998 to 1229 1 to 236   fully sequenced, Submitted on the opposite strand 236/236
(100 %)
3 diff
(98.8 %id)
R78582 placenta .e 1169 to 1579 437 to 23   fully sequenced, AAA Submitted on the opposite strand 415/415
(100 %)
9 diff
(97.9 %id)
H45484 breast .b 2730 to 3184 1 to 462       462/468
(98 %)
21 diff
(95.6 %id)
H45485 breast .b 3257 to 3436 180 to 1       180/180
(100 %)
1 diff
(99.5 %id)
AI820898 ovarian tumor, ovary .e 1219 to 1809 1 to 591       591/591
(100 %)
0 diff
(100 %id)
AA284966 ovarian tumor, ovary .e 1787 to 2186 416 to 14   AAA   403/403
(100 %)
4 diff
(99.1 %id)
AA285124 ovarian tumor, ovary .e 1219 to 1603 1 to 384       384/384
(100 %)
1 diff
(99.8 %id)
AA401923 ovarian tumor, ovary .e 1841 to 2186 359 to 11   AAA   349/349
(100 %)
4 diff
(98.9 %id)
AA402094 ovarian tumor, ovary .e 1221 to 1456 1 to 235       235/235
(100 %)
1 diff
(99.6 %id)
AI820925 ovarian tumor, ovary .e 1219 to 1818 1 to 600       600/600
(100 %)
0 diff
(100 %id)
AI821676 ovarian tumor, ovary .e 1691 to 2186 509 to 11   AAA   499/499
(100 %)
8 diff
(98.4 %id)
AA890464 parathyroid gland, parathyroid tumor .b 3144 to 3452 320 to 13   AAA   308/308
(100 %)
2 diff
(99.4 %id)
AI073437 pooled .b 3027 to 3452 438 to 13   AAA   426/427
(99 %)
1 diff
(99.8 %id)
AI130693 heart .b 3055 to 3453 399 to 1       399/399
(100 %)
2 diff
(99.5 %id)
AI188331 placenta .b 2976 to 3453 480 to 3       478/480
(99 %)
0 diff
(100 %id)
AI863446 brain, tumor, 5 pooled (see description) .b 3132 to 3452 360 to 40   fully sequenced, AAA   321/321
(100 %)
1 diff
(99.7 %id)
BE048222 brain, tumor, 5 pooled (see description) .b 2868 to 3162 1 to 295   fully sequenced,   295/295
(100 %)
1 diff
(99.7 %id)
AI768987 pooled .b 3074 to 3452 391 to 13   AAA   379/379
(100 %)
2 diff
(99.5 %id)
AW014913   .b 3006 to 3454 464 to 16   tiling clone, AAA   449/450
(99 %)
1 diff
(99.8 %id)
AW291378   .b 2909 to 3454 561 to 18   AAA   544/544
(100 %)
6 diff
(98.9 %id)
AW439114 serous papillary carcinoma, high grade, 2pooled tumors, uterus .e 1981 to 2184 210 to 3       208/210
(99 %)
0 diff
(100 %id)
BF515309   .b 3178 to 3454 292 to 16   AAA   277/277
(100 %)
2 diff
(99.3 %id)
BE732381 choriocarcinoma, placenta .b 822 to 1659 1 to 834       834/834
(100 %)
21 diff
(97.5 %id)
BG680250 skin, squamous cell carcinoma .b 2670 to 3401 1 to 731       731/731
(100 %)
2 diff
(99.8 %id)
BU558176 adenocarcinoma, cell line, breast .b 394 to 1057 1 to 667       667/1043
(63 %)
7 diff
(99.4 %id)
BU860003 adenocarcinoma, cell line, breast .b 394 to 1099 1 to 715       713/915
(77 %)
19 diff
(98.0 %id)
BU957076 adenocarcinoma, cell line, breast .b 394 to 1141 1 to 753       753/930
(80 %)
9 diff
(99.1 %id)
NM_001077263.1   .b 61 to 3451 1 to 3391 exact RefSeq,   3391/3391
(100 %)
0 diff
(100 %id)
BP315554 mammary gland .b 29 to 626 1 to 583       583/583
(100 %)
3 diff
(99.5 %id)
BP315772 mammary gland .g 1 to 599 1 to 583 Q83R R88L P91L A92S L93R ... tiling clone,   583/583
(100 %)
2 diff
(99.7 %id)
DA830024 placenta .e 2 to 756 2 to 768   capped   767/851
(90 %)
18 diff
(97.9 %id)
DB375013 placenta .e 1663 to 2189 530 to 1       530/530
(100 %)
11 diff
(98.0 %id)
DA848528 placenta .b 73 to 656 2 to 586   capped   583/585
(99 %)
2 diff
(99.7 %id)
DC381398 placenta .b 96 to 628 1 to 533       533/533
(100 %)
1 diff
(99.9 %id)
DC381405 placenta .b 1 to 541 1 to 541   tiling clone,   541/541
(100 %)
3 diff
(99.5 %id)
BP319980 placenta .b 73 to 661 1 to 589       589/596
(98 %)
3 diff
(99.5 %id)
BM793246 Ascites, stomach .b 2801 to 3203 1 to 404       404/404
(100 %)
7 diff
(98.3 %id)
DN998208 breast cancer, Mammary gland (cancer tissue) .b 72 to 779 1 to 693       693/693
(100 %)
5 diff
(99.3 %id)
BP356834 mammary gland .h 1 to 581 1 to 582 exact tiling clone,   582/582
(100 %)
8 diff
(98.7 %id)
BP359643 mammary gland .b 63 to 653 1 to 579       579/579
(100 %)
7 diff
(98.8 %id)
TI_157599395   .b 2957 to 3452 596 to 101   AAA   496/556
(89 %)
29 diff
(94.8 %id)
DB223460 trachea .b 63 to 636 2 to 575   capped   574/574
(100 %)
3 diff
(99.5 %id)
BU753471 placenta .b 2665 to 3454 802 to 16   AAA   787/791
(99 %)
5 diff
(99.4 %id)
CF529107 placenta .b 3203 to 3452 267 to 18   AAA   250/250
(100 %)
1 diff
(99.6 %id)
CA313327 Human Lung Epithelial cells, lung .f 1 to 668 689 to 18 H79L S191L F192I S195P L196F ... tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 672/694
(96 %)
2 diff
(99.8 %id)
BU732653 eye, optic nerve .b 2954 to 3452 517 to 19   AAA   499/508
(98 %)
1 diff
(99.9 %id)
DB290424 uterus .b 63 to 651 2 to 590   capped   589/589
(100 %)
1 diff
(99.9 %id)
BC018715 Placenta, choriocarcinoma .e 1663 to 2189 530 to 1   available from MGC, AAA Suspected internal deletion, this clone was ignored 530/530
(100 %)
11 diff
(98.0 %id)
DA848528 placenta .b 73 to 656 2 to 586   capped   583/585
(99 %)
2 diff
(99.7 %id)
DC381398 placenta .b 96 to 628 1 to 533       533/533
(100 %)
1 diff
(99.9 %id)
DC381405 placenta .b 1 to 541 1 to 541   tiling clone,   541/541
(100 %)
3 diff
(99.5 %id)
BP319980 placenta .b 73 to 661 1 to 589       589/596
(98 %)
3 diff
(99.5 %id)
BM793246 Ascites, stomach .b 2801 to 3203 1 to 404       404/404
(100 %)
7 diff
(98.3 %id)
BM793246 Ascites, stomach .b 2801 to 3203 1 to 404       404/404
(100 %)
7 diff
(98.3 %id)
DN998208 breast cancer, Mammary gland (cancer tissue) .b 72 to 779 1 to 693       693/693
(100 %)
5 diff
(99.3 %id)
DN998208 breast cancer, Mammary gland (cancer tissue) .b 72 to 779 1 to 693       693/693
(100 %)
5 diff
(99.3 %id)
BP356834 mammary gland .h 1 to 581 1 to 582 exact tiling clone,   582/582
(100 %)
8 diff
(98.7 %id)
BP359643 mammary gland .b 63 to 653 1 to 579       579/579
(100 %)
7 diff
(98.8 %id)
TI_157599395   .b 2957 to 3452 596 to 101   AAA   496/556
(89 %)
29 diff
(94.8 %id)
DB223460 trachea .b 63 to 636 2 to 575   capped   574/574
(100 %)
3 diff
(99.5 %id)
BU753471 placenta .b 2665 to 3454 802 to 16   AAA   787/791
(99 %)
5 diff
(99.4 %id)
CF529107 placenta .b 3203 to 3452 267 to 18   AAA   250/250
(100 %)
1 diff
(99.6 %id)
CA313327 Human Lung Epithelial cells, lung .f 1 to 668 689 to 18 H79L S191L F192I S195P L196F ... tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 672/694
(96 %)
2 diff
(99.8 %id)
CA313327 Human Lung Epithelial cells, lung .f 1 to 668 689 to 18 H79L S191L F192I S195P L196F ... tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 672/694
(96 %)
2 diff
(99.8 %id)
BU732653 eye, optic nerve .b 2954 to 3452 517 to 19   AAA   499/508
(98 %)
1 diff
(99.9 %id)
BU732653 eye, optic nerve .b 2954 to 3452 517 to 19   AAA   499/508
(98 %)
1 diff
(99.9 %id)
DB290424 uterus .b 63 to 651 2 to 590   capped   589/589
(100 %)
1 diff
(99.9 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C