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Gene RPGRTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
139 supporting clones for gene RPGR back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA354385 substantia nigra .a 1 to 572 2 to 573   tiling clone, capped   572/572
(100 %)
0 diff
(100 %id)
BP233620 coronary artery .a 20 to 602 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DA030235   .a 23 to 544 2 to 523   capped   522/522
(100 %)
0 diff
(100 %id)
DA291473 hippocampus .a 23 to 592 2 to 573   capped   572/572
(100 %)
2 diff
(99.7 %id)
DA883040   .a 23 to 588 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DA948160 Spleen .a 23 to 578 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DB202537 trachea .a 25 to 571 2 to 548   capped   547/547
(100 %)
4 diff
(99.3 %id)
DA687938   .a 28 to 554 2 to 528   capped   527/527
(100 %)
3 diff
(99.5 %id)
NM_001034853.1   .a 29 to 4746 1 to 4718 exact RefSeq,   4718/4718
(100 %)
0 diff
(100 %id)
DA751471   .a 29 to 605 2 to 578   capped   577/577
(100 %)
2 diff
(99.7 %id)
BP239228 Liver .a 54 to 665 1 to 612   tiling clone,   612/612
(100 %)
8 diff
(98.7 %id)
BP357671 mammary gland .a 55 to 637 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA040998 bladder .a 56 to 604 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DA167729 amygdala .a 56 to 627 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA521009 brain .a 56 to 613 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA885018   .a 56 to 610 2 to 556   capped   555/555
(100 %)
2 diff
(99.7 %id)
DA942869 Spleen .a 56 to 623 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB078262 testis .a 56 to 621 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA592623 lung .a 58 to 623 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
BI821629 pooled brain, lung, testis .a 58 to 606 1 to 549   available from MGC,   549/549
(100 %)
1 diff
(99.9 %id)
TI_57199320   .a 58 to 606 69 to 617       549/617
(88 %)
7 diff
(98.9 %id)
DA923189 small intestine .a 58 to 616 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA966894 stomach .a 58 to 625 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
DB263447 uterus .a 58 to 647 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DA672440   .a 59 to 632 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
BP212417 cerebrum .a 61 to 638 1 to 578       578/578
(100 %)
1 diff
(99.9 %id)
DB176150 kidney, tumor tissue .a 62 to 643 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
BF588752 breast, lobullar carcinoma in situ .a 1957 to 2384 1 to 429   tiling clone, Submitted on the opposite strand 429/429
(100 %)
7 diff
(98.4 %id)
BF592179 breast, lobullar carcinoma in situ .a 1967 to 2451 497 to 14   tiling clone,   484/497
(97 %)
0 diff
(100 %id)
AV660848 corresponding non cancerous liver tissue .a 3422 to 3778 1 to 357   tiling clone, Submitted on the opposite strand 357/358
(99 %)
3 diff
(99.2 %id)
BQ189348 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 4181 to 4786 1 to 606   tiling clone, AAA   606/606
(100 %)
1 diff
(99.9 %id)
TI_151731628   .a 4181 to 4786 691 to 86   AAA   606/960
(63 %)
1 diff
(99.9 %id)
AK291832   .b 1 to 2896 1 to 2896 I75V tiling clone,   2896/2896
(100 %)
3 diff
(99.9 %id)
DN997437 breast cancer, Mammary gland (cancer tissue) .b 1 to 670 1 to 669       669/669
(100 %)
12 diff
(98.3 %id)
DQ980617 retina .b 2 to 55 1 to 54       54/54
(100 %)
0 diff
(100 %id)
DQ426891 retina .b 8 to 59 1 to 52       52/52
(100 %)
0 diff
(100 %id)
NM_000328.2   .b 8 to 3078 1 to 3071 exact RefSeq, AAA   3071/3071
(100 %)
0 diff
(100 %id)
BX644678   .b 9 to 715 1 to 706       706/706
(100 %)
8 diff
(98.9 %id)
DA390408 thalamus .b 27 to 600 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DB455467 testis .b 30 to 760 1 to 729       729/729
(100 %)
10 diff
(98.7 %id)
DA743491   .b 31 to 594 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
BQ229605 embryonal carcinoma, cell line, testis .b 32 to 336 1 to 309       309/835
(37 %)
11 diff
(98.7 %id)
AU098900   .b 33 to 330 1 to 298       298/300
(99 %)
9 diff
(97.0 %id)
AK223491   .b 34 to 2896 1 to 2863 S11L V490A AAA   2863/2863
(100 %)
3 diff
(99.9 %id)
DQ980616 retina .b 34 to 112 1 to 79       79/79
(100 %)
0 diff
(100 %id)
DA269452 caudate nucleus .b 42 to 676 2 to 636   capped   635/635
(100 %)
0 diff
(100 %id)
CV808116 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 46 to 791 1 to 751       751/882
(85 %)
20 diff
(97.8 %id)
BG900209 cartilage .b 51 to 485 83 to 518       436/448
(97 %)
6 diff
(98.7 %id)
BG898351 cartilage .b 54 to 385 80 to 411       332/347
(95 %)
13 diff
(96.3 %id)
CN269052 embryonic stem cells, cell lines H1, H7, andH9 .b 63 to 422 1 to 361       361/370
(97 %)
1 diff
(99.8 %id)
DA889377   .b 64 to 628 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DA924539 small intestine .b 65 to 631 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA929841 small intestine .b 66 to 644 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
TI_2194697668   .b 94 to 1106 63 to 1069     Submitted on the opposite strand 1007/1243
(81 %)
91 diff
(92.7 %id)
TI_2194697694   .b 94 to 962 52 to 919     Submitted on the opposite strand 868/1262
(68 %)
36 diff
(97.2 %id)
DA670280   .b 100 to 664 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
U57629   .b 117 to 2900 1 to 2784 exact tiling clone,   2784/2784
(100 %)
0 diff
(100 %id)
TI_1948132167   .b 172 to 1100 119 to 1044       925/1404
(65 %)
44 diff
(96.9 %id)
TI_1948132168   .b 172 to 916 123 to 877       755/1260
(59 %)
22 diff
(98.3 %id)
TI_1948132481   .b 172 to 946 124 to 904       781/1474
(52 %)
25 diff
(98.4 %id)
TI_1948132482   .b 172 to 930 132 to 899       768/1213
(63 %)
27 diff
(97.8 %id)
TI_1948132793   .b 172 to 1057 121 to 1014       894/1458
(61 %)
35 diff
(97.6 %id)
TI_1948132794   .b 172 to 939 136 to 910       775/1330
(58 %)
22 diff
(98.4 %id)
TI_1948133101   .b 172 to 1090 132 to 1060       929/1184
(78 %)
37 diff
(96.9 %id)
CV030259 mixed .b 176 to 808 1 to 632       632/632
(100 %)
0 diff
(100 %id)
AA167710   .b 258 to 869 9 to 604     Submitted on the opposite strand 596/607
(98 %)
23 diff
(96.3 %id)
FN164734 breast carcinoma .b 313 to 413 99 to 1     Submitted on the opposite strand 99/99
(100 %)
6 diff
(94.0 %id)
CN269053 embryonic stem cells, cell lines H1, H7, andH9 .b 407 to 1044 1 to 638       638/638
(100 %)
0 diff
(100 %id)
BG560814   .b 679 to 1377 699 to 1     Submitted on the opposite strand 699/699
(100 %)
1 diff
(99.9 %id)
BG010685 placenta_normal .b 761 to 1043 6 to 284       279/287
(97 %)
11 diff
(96.2 %id)
BE544083 cervical carcinoma cell line, cervix .b 781 to 1421 1 to 649       647/860
(75 %)
21 diff
(97.6 %id)
BQ439339 melanotic melanoma, skin .b 891 to 1642 1 to 758       758/883
(85 %)
11 diff
(98.8 %id)
BG032027 breast, mammary adenocarcinoma, cell line .b 1004 to 1746 1 to 749       749/763
(98 %)
17 diff
(97.8 %id)
BF844857 head_neck .b 1259 to 1744 19 to 515       495/532
(93 %)
49 diff
(90.8 %id)
BM818755 stomach .b 1830 to 2155 1 to 326       326/326
(100 %)
12 diff
(96.4 %id)
AJ710997 heart .b 1946 to 2392 447 to 1     Submitted on the opposite strand 447/453
(98 %)
5 diff
(98.9 %id)
BF835699 head_neck .b 1969 to 2131 174 to 13     Submitted on the opposite strand 162/174
(93 %)
1 diff
(99.5 %id)
DB520887 testis .b 1994 to 2718 1 to 717     Submitted on the opposite strand 717/717
(100 %)
18 diff
(97.5 %id)
TI_149300552   .b 2085 to 2896 910 to 109   AAA   802/918
(87 %)
22 diff
(97.7 %id)
AA036902 uterus .b 2092 to 2266 1 to 176       176/179
(98 %)
2 diff
(98.9 %id)
AA027902 uterus .b 2164 to 2566 1 to 407   fully sequenced,   407/407
(100 %)
3 diff
(99.3 %id)
BM976523 lung, Primary Lung Cystic Fibrosis EpithelialCells .b 2242 to 2896 674 to 19   AAA   656/656
(100 %)
4 diff
(99.4 %id)
TI_149307860   .b 2257 to 2896 720 to 84   AAA   637/876
(72 %)
12 diff
(98.7 %id)
AW439197 serous papillary carcinoma, high grade, 2pooled tumors, uterus .b 2265 to 2900 638 to 2       637/645
(98 %)
6 diff
(99.1 %id)
TI_149306401   .b 2265 to 2896 115 to 748   AAA Submitted on the opposite strand 637/748
(85 %)
7 diff
(99.1 %id)
TI_159723680   .b 2265 to 3078 895 to 80   AAA   816/1000
(81 %)
14 diff
(98.6 %id)
BU686442 lung, Primary Lung Epithelial Cells .b 2265 to 2896 46 to 679   AAA Submitted on the opposite strand 637/662
(96 %)
7 diff
(99.0 %id)
AW439179 serous papillary carcinoma, high grade, 2pooled tumors, uterus .b 2267 to 2618 349 to 1       349/352
(99 %)
11 diff
(96.9 %id)
BU686775 lung, Primary Lung Epithelial Cells .b 2314 to 2896 602 to 19   AAA   584/584
(100 %)
1 diff
(99.9 %id)
AW055029 brain, glioblastoma (pooled) .b 2323 to 2896 574 to 1       574/582
(98 %)
1 diff
(99.9 %id)
AW129575 serous papillary carcinoma, high grade, 2pooled tumors, uterus .b 2324 to 2909 590 to 4       587/605
(97 %)
5 diff
(99.2 %id)
AW973435   .b 2332 to 2894 563 to 1     Submitted on the opposite strand 563/563
(100 %)
11 diff
(98.1 %id)
AW468810 pooled .b 2336 to 2899 564 to 1       564/564
(100 %)
7 diff
(98.8 %id)
CB853555 Human Lung Epithelial cells, lung .b 2415 to 3078 682 to 19   AAA   664/664
(100 %)
2 diff
(99.7 %id)
CA313540 Human Lung Epithelial cells, lung .b 2416 to 3078 681 to 19   AAA   663/679
(97 %)
0 diff
(100 %id)
DB522020 testis .b 2417 to 2896 1 to 480     Submitted on the opposite strand 480/480
(100 %)
1 diff
(99.8 %id)
DB528143 testis .b 2417 to 2896 1 to 480     Submitted on the opposite strand 480/480
(100 %)
1 diff
(99.8 %id)
AW183907 pooled .b 2418 to 2897 480 to 1       480/493
(97 %)
6 diff
(98.8 %id)
AV750481 Pituitary .b 2421 to 2797 1 to 370       370/371
(99 %)
5 diff
(98.7 %id)
AI356712 brain, glioblastoma (pooled) .b 2435 to 2896 462 to 1       462/462
(100 %)
0 diff
(100 %id)
AI445356 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b 2435 to 2896 459 to 1       459/462
(99 %)
11 diff
(97.7 %id)
AA167684   .b 2506 to 3086 574 to 5   tiling clone, Submitted on the opposite strand 570/594
(95 %)
0 diff
(100 %id)
AA027837 uterus .b 2536 to 2905 376 to 1   fully sequenced,   376/376
(100 %)
4 diff
(99.0 %id)
AA582729 colon, tumor .b 2556 to 2895 340 to 1       340/340
(100 %)
0 diff
(100 %id)
D20187   .b 2598 to 2900 1 to 303     Submitted on the opposite strand 303/303
(100 %)
2 diff
(99.4 %id)
EC512524 Prostate .b 2795 to 2902 1 to 107       107/110
(97 %)
5 diff
(95.5 %id)
AJ238395 retina .c 1 to 2815 1 to 2815 exact tiling clone, AAA   2815/2815
(100 %)
0 diff
(100 %id)
CD654249 Embryonic Stem cells .d 1 to 770 3 to 764   tiling clone,   762/786
(96 %)
6 diff
(99.3 %id)
DB147320 thymus .d 718 to 1260 2 to 544   tiling clone, capped   543/544
(99 %)
2 diff
(99.7 %id)
DB345834 thymus .d 2672 to 3207 539 to 2   tiling clone,   538/539
(99 %)
0 diff
(100 %id)
BC031624 Brain, Lung, Testis, adult, pooled whole .e 1 to 2257 1 to 2257 exact tiling clone, available from MGC, AAA   2257/2257
(100 %)
1 diff
(100.0 %id)
TI_1948133102   .e 606 to 1581 1095 to 124       972/1276
(76 %)
39 diff
(97.0 %id)
TI_1948132169   .e 751 to 1581 967 to 123       845/1356
(62 %)
25 diff
(98.2 %id)
TI_1948132483   .e 751 to 1581 953 to 124       830/1304
(63 %)
13 diff
(99.1 %id)
TI_1948132795   .e 780 to 1581 933 to 124   tiling clone,   810/1366
(59 %)
9 diff
(99.4 %id)
TI_1948132484   .e 911 to 1581 805 to 134       672/1423
(47 %)
12 diff
(99.2 %id)
TI_1948133103   .e 916 to 1581 806 to 129       678/1376
(49 %)
26 diff
(98.2 %id)
TI_1948132796   .e 919 to 1581 796 to 126       671/1433
(46 %)
26 diff
(98.2 %id)
TI_1948132170   .e 950 to 1581 763 to 127       637/1405
(45 %)
16 diff
(98.9 %id)
BM844283 lymph node, stomach .e 1578 to 1906 1 to 327       327/327
(100 %)
2 diff
(99.4 %id)
TI_57179340   .f 1 to 918 29 to 943 V276G V283C Y284V T285Y F286L ... tiling clone,   915/944
(96 %)
17 diff
(98.2 %id)
BI769564 pooled lung and spleen .f 8 to 918 1 to 908   tiling clone,   908/909
(99 %)
11 diff
(98.8 %id)
DA063194 cerebellum .f 232 to 787 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
AY927527   .g 1 to 662 1 to 662 D218G L219I tiling clone,   662/725
(91 %)
6 diff
(99.2 %id)
BG929240 cartilage .h 1 to 354 86 to 439   tiling clone,   354/371
(95 %)
6 diff
(98.4 %id)
DB456602 testis .h 310 to 795 1 to 486       486/486
(100 %)
1 diff
(99.8 %id)
DB462686 testis .h 310 to 796 1 to 487   tiling clone,   487/487
(100 %)
1 diff
(99.8 %id)
DA427627 colon .h 599 to 1108 2 to 511   tiling clone, capped   510/510
(100 %)
0 diff
(100 %id)
BX282502 serous papillary carcinoma, high grade, 2pooled tumors, uterus .i 1 to 454 1 to 455   tiling clone,   455/455
(100 %)
2 diff
(99.6 %id)
AI268515 carcinoid, lung .i 134 to 549 416 to 1   tiling clone,   416/416
(100 %)
0 diff
(100 %id)
N78353 multiple sclerosis lesions .i 278 to 549 1 to 272       272/277
(98 %)
4 diff
(98.6 %id)
N78354 multiple sclerosis lesions .i 290 to 801 1 to 509   tiling clone, fully sequenced,   509/509
(100 %)
18 diff
(96.5 %id)
N62125 multiple sclerosis lesions .i 771 to 1186 416 to 1   tiling clone, fully sequenced,   416/416
(100 %)
0 diff
(100 %id)
N62124 multiple sclerosis lesions .i 848 to 1161 317 to 1       317/323
(98 %)
7 diff
(97.9 %id)
AI028177   .j 1 to 428 443 to 14 T114S tiling clone, AAA   429/432
(99 %)
2 diff
(99.6 %id)
AI138704 uterus .k 1 to 392 394 to 3 N80K tiling clone,   392/394
(99 %)
0 diff
(100 %id)
BE551713 pooled germ cell tumors .k 55 to 392 341 to 4   tiling clone,   338/350
(96 %)
5 diff
(98.6 %id)
DR422699 eye, Pterygium .l 1 to 710 1 to 710   tiling clone,   710/710
(100 %)
3 diff
(99.6 %id)
BQ447314 Knee, Osteoarthritic Cartilage .l 355 to 1046 711 to 19 exact tiling clone, AAA   693/693
(100 %)
1 diff
(99.9 %id)
BQ446671 Knee, Osteoarthritic Cartilage .l 365 to 1046 701 to 19 exact tiling clone, AAA   683/683
(100 %)
1 diff
(99.9 %id)
BM665779 eye, Retina Foveal and Macular Gene RPGR, variant not shown       AAA      
BM694031 eye, Retina Foveal and Macular Gene RPGR, variant not shown              
DA043076 bladder Gene RPGR, variant not shown       capped      
BE379863 bladder, carcinoma, cell line Gene RPGR, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI