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Gene PTPN22TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
108 supporting clones for gene PTPN22 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AA298761 testis .c 1575 to 1808 1 to 234       234/234
(100 %)
0 diff
(100 %id)
AA355040   .o-u 1 to 363 1 to 374 F18X K26E S27V V28C I29K ... tiling clone,   374/432
(86 %)
12 diff
(97.3 %id)
AV705592 adrenal gland .a 2030 to 2700 1 to 671       671/671
(100 %)
9 diff
(98.7 %id)
AF001846   .a 163 to 3224 1 to 3058 K51N P52A D241V Y242D T243Y ... tiling clone,   3058/3058
(100 %)
9 diff
(99.8 %id)
AF001847   .e 1 to 2258 1 to 2261 K64N P65A D254V Y255D T256Y ... tiling clone,   2261/2356
(95 %)
5 diff
(99.8 %id)
AF077031   .a 132 to 3034 1 to 2903 V126G G147V L420P P742S tiling clone,   2903/2903
(100 %)
5 diff
(99.9 %id)
AF150732 adrenal gland .a 134 to 3034 1 to 2877 K97E Y215T E366D L367V V368S ...     2877/2877
(100 %)
44 diff
(98.5 %id)
AK303124 thymus .g 1 to 2421 1 to 2421 D172G W376R tiling clone,   2421/2421
(100 %)
3 diff
(99.9 %id)
AK310570 thymus .f 1 to 2118 1 to 2118 A245V W493R tiling clone,   2118/2118
(100 %)
3 diff
(99.9 %id)
AK310698 thymus .b 1 to 2726 1 to 2726 V126A W620R F634S tiling clone,   2726/2726
(100 %)
3 diff
(99.9 %id)
AW363814 colon .c 1135 to 1707 14 to 588       575/588
(97 %)
0 diff
(100 %id)
AW363818 colon .j 1 to 503 507 to 2 Y5D I6R V9G E10G Y13V ... tiling clone,   506/507
(99 %)
27 diff
(94.7 %id)
AW373463 breast .c 1176 to 1688 8 to 521       514/521
(98 %)
0 diff
(100 %id)
AW967600   .a 1739 to 2285 35 to 582       548/582
(94 %)
10 diff
(98.3 %id)
BC071670 Lymph, lymphoma .d 56 to 3476 1 to 3421 W565R tiling clone, available from MGC, AAA   3421/3421
(100 %)
2 diff
(100.0 %id)
BE169806 head_neck .c 2135 to 2462 331 to 1     Submitted on the opposite strand 331/331
(100 %)
6 diff
(98.2 %id)
BF351515 head_neck .a 2026 to 2610 612 to 31       582/612
(95 %)
14 diff
(97.8 %id)
BG184523   .c 2328 to 2707 1 to 379   AAA   377/379
(99 %)
6 diff
(98.5 %id)
BG198463   .c 2299 to 3080 1 to 781       781/783
(99 %)
17 diff
(97.9 %id)
BG213603   .c 2406 to 2704 1 to 306   AAA   306/306
(100 %)
8 diff
(97.4 %id)
BG218899   .c 2335 to 2708 44 to 417   AAA   374/417
(89 %)
2 diff
(99.6 %id)
BG219901   .c 2303 to 3105 1 to 812       812/814
(99 %)
31 diff
(96.2 %id)
BG219902   .c 2303 to 3038 1 to 738   tiling clone,   738/763
(96 %)
32 diff
(95.9 %id)
BU198510   .a 1897 to 2516 1 to 620       620/620
(100 %)
4 diff
(99.4 %id)
BX099228   .m 1 to 560 1 to 560 exact tiling clone, AAA   560/560
(100 %)
0 diff
(100 %id)
CD687350 normal nasopharynx .l-u 1 to 656 22 to 677 exact tiling clone,   656/677
(96 %)
0 diff
(100 %id)
CD692658 normal nasopharynx .c 1 to 539 21 to 559   tiling clone,   539/559
(96 %)
1 diff
(99.9 %id)
CR747920 pooled .c 2600 to 3399 1 to 801   tiling clone,   801/801
(100 %)
2 diff
(99.8 %id)
DA463270   .c 846 to 1391 2 to 548   capped   547/547
(100 %)
2 diff
(99.7 %id)
DA468621   .c 84 to 643 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
AL597518   .c 51 to 498 1 to 448       448/448
(100 %)
0 diff
(100 %id)
BX482744   .c 614 to 1126 1 to 513       513/513
(100 %)
0 diff
(100 %id)
EL735449 mixed .h 91 to 629 1 to 539       539/609
(88 %)
1 diff
(99.9 %id)
FN056423 breast carcinoma .a 2162 to 2252 1 to 92       92/92
(100 %)
4 diff
(95.7 %id)
FN057961 breast carcinoma .c 1185 to 1273 1 to 91       91/91
(100 %)
5 diff
(94.6 %id)
FN059416 breast carcinoma .c 1185 to 1273 1 to 89       89/89
(100 %)
3 diff
(96.7 %id)
FN096893 breast carcinoma .c 1340 to 1450 110 to 1     Submitted on the opposite strand 110/110
(100 %)
1 diff
(99.1 %id)
GU479452   .c 87 to 2521 1 to 2435 exact tiling clone,   2435/2435
(100 %)
0 diff
(100 %id)
DA592634 lung .c 83 to 646 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
AA251351 germinal center B cell .c 2301 to 2701 401 to 1       401/444
(90 %)
4 diff
(99.1 %id)
AA281242 germinal center B cell .c 2301 to 2703 402 to 1       402/408
(98 %)
4 diff
(99.1 %id)
AA721264 germinal center B cell .c 2619 to 2883 265 to 1   tiling clone,   265/265
(100 %)
1 diff
(99.7 %id)
AA808708 germinal center B cell .c 3187 to 3570 403 to 20       384/403
(95 %)
0 diff
(100 %id)
AA748329 germinal center B cell .c 3232 to 3563 342 to 11   AAA   332/332
(100 %)
0 diff
(100 %id)
AA906845 pooled .c 3166 to 3570 413 to 9   tiling clone,   405/413
(98 %)
0 diff
(100 %id)
AI016085   .m 81 to 562 483 to 2 exact     482/483
(99 %)
2 diff
(99.6 %id)
AI370262 follicular lymphoma, lymph node .c 2489 to 2703 217 to 3       215/220
(97 %)
0 diff
(100 %id)
AI583580 adenocarcinoma, Pancreas .n 1 to 390 386 to 1 exact tiling clone,   386/386
(100 %)
12 diff
(96.9 %id)
AW665758 pooled .c 3076 to 3570 503 to 9       495/503
(98 %)
0 diff
(100 %id)
AW576125 lymph .c 3083 to 3563 498 to 18   AAA   481/481
(100 %)
0 diff
(100 %id)
AW504119 lymph .c 416 to 890 1 to 475       475/475
(100 %)
5 diff
(99.0 %id)
BF573502 melanotic melanoma, high MDR, skin .c 2199 to 2823 1 to 611       613/827
(74 %)
20 diff
(97.6 %id)
BF573145 melanotic melanoma, high MDR, skin .c 2375 to 3067 1 to 686       688/834
(82 %)
36 diff
(95.7 %id)
BG505436 embryonal carcinoma, testis .a 1929 to 2547 1 to 620       620/620
(100 %)
5 diff
(99.2 %id)
BC017785 Prostate, adenocarcinoma. .h 2 to 1788 1 to 1787 exact tiling clone, available from MGC, AAA   1787/1787
(100 %)
2 diff
(99.9 %id)
BG498752 adenocarcinoma, Prostate .h 1 to 637 1 to 641 F24L A25P N26M E27N L29* tiling clone, available from MGC,   641/745
(86 %)
14 diff
(98.2 %id)
BG536550 lung .c 2191 to 2908 1 to 712       714/712
(100 %)
13 diff
(98.2 %id)
BG541535 lung .a 1590 to 2386 1 to 803       803/832
(96 %)
21 diff
(97.5 %id)
BG614041 embryonal carcinoma, testis .a 1925 to 2739 1 to 810       808/814
(99 %)
28 diff
(96.6 %id)
BM458477 lymph, lymphoma, cell line .d 57 to 1173 1 to 1116       1116/1116
(100 %)
37 diff
(96.7 %id)
BU928431 brain, glioblastoma .a 1667 to 2340 1 to 678       678/779
(87 %)
7 diff
(99.2 %id)
NM_012411.4   .d 1 to 3482 1 to 3482 W565R RefSeq, AAA   3482/3482
(100 %)
1 diff
(100.0 %id)
NM_015967.5   .a 74 to 3720 1 to 3647 W620R RefSeq, AAA   3647/3647
(100 %)
1 diff
(100.0 %id)
NM_001193431.1   .c 7 to 3569 1 to 3563 W620R RefSeq, AAA   3563/3563
(100 %)
1 diff
(100.0 %id)
DA814207   .c 25 to 597 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
TI_1948219629   .h 177 to 629 581 to 129       453/1387
(32 %)
7 diff
(99.5 %id)
TI_1948219630   .h 89 to 629 672 to 130       543/600
(90 %)
17 diff
(97.2 %id)
TI_1948219888   .h 89 to 629 131 to 671       541/615
(87 %)
2 diff
(99.7 %id)
TI_1948219889   .h 90 to 629 667 to 128       540/567
(95 %)
2 diff
(99.7 %id)
TI_1948219890   .h 89 to 629 670 to 129       542/742
(73 %)
9 diff
(98.8 %id)
TI_1948220203   .c 135 to 505 128 to 500       373/1364
(27 %)
5 diff
(99.7 %id)
TI_1948220204   .h 89 to 629 138 to 678       541/602
(89 %)
1 diff
(99.9 %id)
TI_1948220205   .h 171 to 629 589 to 128       462/1407
(32 %)
7 diff
(99.6 %id)
TI_1948220206   .h 92 to 629 666 to 128       539/1379
(39 %)
4 diff
(99.8 %id)
TI_1948220488   .h 89 to 629 128 to 668       541/1457
(37 %)
5 diff
(99.7 %id)
TI_1948220489   .h 89 to 544 134 to 589       456/482
(94 %)
0 diff
(100 %id)
DA904581   .c 25 to 576 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA917643 small intestine .c 1002 to 1556 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA950781 Spleen .i 1 to 564 2 to 565 V142I tiling clone, capped   564/564
(100 %)
1 diff
(99.9 %id)
DA989695 synovial membrane tissue from rheumatioidarthritis .c 88 to 603 2 to 518   capped   517/517
(100 %)
1 diff
(99.9 %id)
DA993348 synovial membrane tissue from rheumatioidarthritis .c 15 to 421 134 to 540   capped   407/539
(75 %)
0 diff
(100 %id)
DA994670 synovial membrane tissue from rheumatioidarthritis .c 21 to 565 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DA994855 synovial membrane tissue from rheumatioidarthritis .c 83 to 630 2 to 549   capped   548/548
(100 %)
2 diff
(99.7 %id)
DA995062 synovial membrane tissue from rheumatioidarthritis .c 83 to 638 2 to 558   capped   557/557
(100 %)
2 diff
(99.7 %id)
DA997014   .c 49 to 616 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DN997966 breast cancer, Mammary gland (cancer tissue) .c 99 to 650 9 to 560       552/560
(98 %)
0 diff
(100 %id)
DN998354 bone marrow .c 35 to 541 1 to 507       507/507
(100 %)
3 diff
(99.5 %id)
BE241812 leukopheresis .c 26 to 393 1 to 368       368/368
(100 %)
3 diff
(99.2 %id)
BE242075 leukopheresis .c 2477 to 2817 342 to 2       341/342
(99 %)
0 diff
(100 %id)
DB107452 thymus .c 49 to 615 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DC405390 thymus .g 1 to 573 1 to 573       573/573
(100 %)
1 diff
(99.9 %id)
DB110171 thymus .f 2 to 563 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DB130462 thymus .c 21 to 576 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DB138002 thymus .c 49 to 584 2 to 537   capped   536/536
(100 %)
0 diff
(100 %id)
DB143675 thymus .i 15 to 541 2 to 528   capped   527/527
(100 %)
1 diff
(99.9 %id)
DB145424 thymus .k 1 to 526 2 to 527 exact tiling clone, capped   526/526
(100 %)
0 diff
(100 %id)
DB151309 thymus .c 49 to 613 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DB153400 thymus .c 49 to 643 2 to 595   capped   594/594
(100 %)
2 diff
(99.7 %id)
DB155963 thymus .c 46 to 644 2 to 600   tiling clone, capped   599/599
(100 %)
1 diff
(99.9 %id)
DB163082 thymus .c 49 to 626 2 to 579   capped   578/585
(98 %)
5 diff
(99.2 %id)
TI_154065032   .b 2128 to 2720 688 to 96   AAA   593/730
(81 %)
18 diff
(97.6 %id)
TI_154133857   .c 2723 to 3563 925 to 92   AAA   834/1141
(73 %)
46 diff
(96.0 %id)
TI_154149187   .a 1 to 572 90 to 643   tiling clone,   554/766
(72 %)
25 diff
(96.8 %id)
TI_154160200   .c 423 to 963 80 to 620       541/541
(100 %)
4 diff
(99.3 %id)
U69700   .c 611 to 865 1 to 253       251/253
(99 %)
5 diff
(98.1 %id)
DB291748 uterus .c 49 to 628 2 to 581   capped   580/580
(100 %)
2 diff
(99.7 %id)
AV716057   .c 49 to 613 2 to 566     Suspected internal deletion, this clone was ignored 565/565
(100 %)
0 diff
(100 %id)
BF687526 brain, glioblastoma .c 49 to 643 2 to 595   AAA This clone was ignored 594/594
(100 %)
2 diff
(99.7 %id)
DB155963 thymus .c 46 to 644 2 to 600   tiling clone, capped   599/599
(100 %)
1 diff
(99.9 %id)
DB163082 thymus .c 49 to 626 2 to 579   capped   578/585
(98 %)
5 diff
(99.2 %id)
TI_154065032   .b 2128 to 2720 688 to 96   AAA   593/730
(81 %)
18 diff
(97.6 %id)
TI_154133857   .c 2723 to 3563 925 to 92   AAA   834/1141
(73 %)
46 diff
(96.0 %id)
TI_154149187   .a 1 to 572 90 to 643   tiling clone,   554/766
(72 %)
25 diff
(96.8 %id)
TI_154160200   .c 423 to 963 80 to 620       541/541
(100 %)
4 diff
(99.3 %id)
U69700   .c 611 to 865 1 to 253       251/253
(99 %)
5 diff
(98.1 %id)
DB291748 uterus .c 49 to 628 2 to 581   capped   580/580
(100 %)
2 diff
(99.7 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l-u, .m, .n, .o-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI