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Gene PTGS2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
188 supporting clones for gene PTGS2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AA296431 umbilical vein .a 1333 to 1611 1 to 279       279/279
(100 %)
0 diff
(100 %id)
AA298098 Bone .c 3671 to 4005 1 to 335       335/336
(99 %)
4 diff
(98.9 %id)
AA371396 Prostate .c 3646 to 3958 1 to 314       314/314
(100 %)
1 diff
(99.7 %id)
AJ634912 peripheral blood .b 1 to 1705 1 to 1705 exact tiling clone,   1705/1705
(100 %)
0 diff
(100 %id)
AJ705220 bone marrow .c 4206 to 4568 20 to 381       362/381
(95 %)
6 diff
(98.5 %id)
AK292167 synovial membrane tissue from rheumatoidarthritis .a 8 to 2025 1 to 2018 exact     2018/2018
(100 %)
1 diff
(100.0 %id)
AW059881   .c 4589 to 4677 89 to 1       89/101
(88 %)
0 diff
(100 %id)
AW818573 stomach .a 715 to 1055 358 to 18       341/358
(95 %)
1 diff
(99.8 %id)
AW955541   .c 3672 to 4079 1 to 399       399/399
(100 %)
12 diff
(97.0 %id)
AY151286   .c 8 to 3644 1 to 3653   tiling clone, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 3653/3653
(100 %)
22 diff
(99.4 %id)
AY462100 placenta .a 133 to 1947 1 to 1815 exact     1815/1815
(100 %)
0 diff
(100 %id)
BC013734 Lung, large cell carcinoma .a 13 to 3390 1 to 3378 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 3378/3378
(100 %)
3 diff
(100.0 %id)
BE439627 Trabecular meshwork .c 4223 to 4759 570 to 32       539/570
(94 %)
0 diff
(100 %id)
BE717711 head_neck .a 182 to 444 42 to 306       268/325
(82 %)
8 diff
(97.6 %id)
BE937429 stomach .a 715 to 1055 358 to 18       341/358
(95 %)
1 diff
(99.8 %id)
BF326657 breast_normal .c 3273 to 3785 1 to 512       512/512
(100 %)
20 diff
(96.1 %id)
BF351506 head_neck .c 3257 to 3667 1 to 410       410/412
(99 %)
18 diff
(95.7 %id)
BF753230 breast_normal .c 3239 to 3692 18 to 468       451/468
(96 %)
6 diff
(98.8 %id)
BI335813 skin .c 4030 to 4375 1 to 346       346/346
(100 %)
1 diff
(99.8 %id)
AV756509 bone marrow .a 2409 to 3082 104 to 773       670/682
(98 %)
10 diff
(98.6 %id)
DA170263 amygdala .a 1 to 536 2 to 537   capped   536/536
(100 %)
0 diff
(100 %id)
DA182079 amygdala .a 2 to 544 21 to 563   capped   543/543
(100 %)
0 diff
(100 %id)
DA277667 corpus callosum .a 1 to 569 6 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DA373879 thalamus .a 2355 to 2895 2 to 542   capped   541/542
(99 %)
5 diff
(99.1 %id)
DA381783 thalamus .a 2137 to 2700 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
BU493602 brain, colon cancer .c 943 to 1477 1 to 535       535/535
(100 %)
1 diff
(99.9 %id)
BX115842 placenta .c 4010 to 4716 1 to 706   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 706/706
(100 %)
6 diff
(99.2 %id)
C02258   .c 4590 to 4715 1 to 126       126/131
(96 %)
1 diff
(99.3 %id)
BP202958 coronary artery .a 1518 to 2099 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP204393 coronary artery .a 2099 to 2662 1 to 567       567/574
(98 %)
7 diff
(98.8 %id)
BP205024 coronary artery .c 3026 to 3597 1 to 571       571/571
(100 %)
5 diff
(99.2 %id)
BP205156 coronary artery .a 2463 to 3000 1 to 543       543/582
(93 %)
35 diff
(94.0 %id)
BP205519 coronary artery .a 1025 to 1606 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP205563 coronary artery .a 2454 to 3035 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
BP206145 coronary artery .c 3013 to 3594 1 to 582   tiling clone,   582/582
(100 %)
5 diff
(99.2 %id)
BP206185 coronary artery .c 3145 to 3724 1 to 581       581/581
(100 %)
19 diff
(96.8 %id)
BP207892 coronary artery .c 3948 to 4526 1 to 578       578/582
(99 %)
16 diff
(97.3 %id)
CD609928   .a 11 to 810 11 to 816       806/820
(98 %)
15 diff
(98.2 %id)
CD609929   .a 806 to 1421 627 to 12       616/627
(98 %)
1 diff
(99.9 %id)
CD609930   .a 695 to 1421 742 to 13       730/745
(97 %)
4 diff
(99.5 %id)
CD609931   .a 11 to 758 11 to 757       747/757
(98 %)
10 diff
(98.7 %id)
CN337322 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 501 to 1167 1 to 667       667/667
(100 %)
0 diff
(100 %id)
CN337323 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 80 to 561 1 to 482       482/482
(100 %)
1 diff
(99.8 %id)
BX363285   .a 31 to 1072 1 to 1037       1037/1037
(100 %)
6 diff
(99.5 %id)
BX370552   .a 862 to 1817 8 to 967       960/968
(99 %)
48 diff
(95.1 %id)
BX374215   .c 3814 to 4711 901 to 1       901/916
(98 %)
25 diff
(97.3 %id)
AL579066 placenta .c 3692 to 4680 990 to 1       990/1001
(98 %)
39 diff
(96.2 %id)
AL583668 placenta .c 1 to 938 1 to 938   tiling clone,   938/938
(100 %)
11 diff
(98.9 %id)
CV023684 mixed .a 133 to 624 1 to 492       492/492
(100 %)
3 diff
(99.4 %id)
AL691944   .a 1975 to 2571 9 to 605       597/605
(98 %)
6 diff
(99.1 %id)
AL691954   .a 1975 to 2571 9 to 606       598/606
(98 %)
6 diff
(99.1 %id)
AL710680 human skeletal muscle .a 1059 to 1544 1 to 486       486/489
(99 %)
5 diff
(99.0 %id)
AL710813 human skeletal muscle .a 1059 to 1720 1 to 662       662/662
(100 %)
0 diff
(100 %id)
AL712736 human skeletal muscle .d 443 to 1044 1 to 602 K132* tiling clone,   602/602
(100 %)
4 diff
(99.4 %id)
AL710848 human skeletal muscle .a 666 to 1368 1 to 701       701/701
(100 %)
3 diff
(99.6 %id)
ES315871 melanoma cell line .c 3937 to 4339 36 to 437       402/437
(91 %)
6 diff
(98.7 %id)
DA486815 brain .a 1 to 561 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
FN062660 breast carcinoma .c 4612 to 4693 1 to 83       83/83
(100 %)
6 diff
(92.8 %id)
FN076139 breast carcinoma .c 4576 to 4680 101 to 1     Submitted on the opposite strand 101/101
(100 %)
5 diff
(95.1 %id)
FN095178 breast carcinoma .c 4269 to 4379 1 to 111       111/111
(100 %)
3 diff
(97.3 %id)
FN158939 breast carcinoma .c 3366 to 3435 7 to 77       71/77
(92 %)
6 diff
(92.3 %id)
FN174940 breast carcinoma .c 3857 to 3925 1 to 67       67/67
(100 %)
3 diff
(95.6 %id)
D61723   .c 4223 to 4549 1 to 325       325/335
(97 %)
5 diff
(98.6 %id)
D58162   .c 4139 to 4356 1 to 218       218/218
(100 %)
0 diff
(100 %id)
D58371   .c 3741 to 3997 1 to 257       257/257
(100 %)
1 diff
(99.7 %id)
DB480063 hippocampus .a 1 to 531 2 to 532       532/532
(100 %)
1 diff
(99.9 %id)
DB548794 hippocampus .c 4259 to 4711 1 to 453     Submitted on the opposite strand 453/454
(99 %)
1 diff
(99.8 %id)
DA543033   .a 1912 to 2482 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA549596   .a 1 to 564 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
R80217 placenta .c 4478 to 4706 228 to 1       228/228
(100 %)
2 diff
(99.2 %id)
R80322 placenta .c 4009 to 4413 1 to 408       408/408
(100 %)
4 diff
(99.1 %id)
AA644211 lung, lung carcinoma .c 4333 to 4713 381 to 1       381/381
(100 %)
0 diff
(100 %id)
AA565385 colon, tumor .c 3030 to 3641 609 to 1       609/609
(100 %)
15 diff
(97.6 %id)
AA593850 colon, colon tumor .c 4210 to 4717 509 to 1       509/509
(100 %)
1 diff
(99.9 %id)
AA649944 normal prostate, Prostate .a 1897 to 2476 578 to 1       578/617
(93 %)
33 diff
(94.7 %id)
AA661753 normal prostate, Prostate .c 4198 to 4718 521 to 1       521/521
(100 %)
1 diff
(99.9 %id)
AA825346 carcinoid, lung .a 2222 to 2745 1 to 522     Submitted on the opposite strand 522/522
(100 %)
11 diff
(97.9 %id)
AI123006 pooled .a 1992 to 2575 591 to 1       591/594
(99 %)
27 diff
(95.5 %id)
AA918509 Kidney .c 4206 to 4717 512 to 1       512/512
(100 %)
3 diff
(99.5 %id)
AI022012 senescent fibroblast .a 1642 to 2183 537 to 1       537/537
(100 %)
20 diff
(96.3 %id)
AI401793 Prostate .c 4061 to 4762 695 to 1   tiling clone,   695/699
(99 %)
28 diff
(96.0 %id)
AI610431 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .c 3968 to 4762 809 to 14   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 796/796
(100 %)
37 diff
(95.4 %id)
AI610346 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .c 3644 to 4148 546 to 44       503/546
(92 %)
0 diff
(100 %id)
AI783660 Prostate .a 1602 to 2187 586 to 1       586/597
(98 %)
19 diff
(96.9 %id)
AI669722 Prostate .c 4022 to 4716 722 to 30   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 693/693
(100 %)
18 diff
(97.5 %id)
AI826642 normal prostate, Prostate .c 3501 to 4100 599 to 2       598/599
(99 %)
0 diff
(100 %id)
AI935944 normal prostate, Prostate .c 4276 to 4713 440 to 1       440/440
(100 %)
9 diff
(98.0 %id)
AI970555 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .c 4098 to 4715 648 to 29   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 620/620
(100 %)
5 diff
(99.2 %id)
AI971172 Prostate .a 1775 to 2571 796 to 1       796/810
(98 %)
26 diff
(96.8 %id)
AI950710 lung, two pooled squamous cell carcinomas .c 4425 to 4721 297 to 1       297/297
(100 %)
3 diff
(99.0 %id)
AW073894 2 pooled high-grade transitional celltumors, genitourinary tract .c 4027 to 4709 684 to 1       684/688
(99 %)
20 diff
(97.1 %id)
AW150290 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 4054 to 4709 654 to 1       654/654
(100 %)
11 diff
(98.4 %id)
AW276095 lung, two pooled squamous cell carcinomas .c 3558 to 4147 600 to 11   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 590/590
(100 %)
14 diff
(97.7 %id)
AW467769 myeloid cells, 18 pooled CML cases, BCR/ABLrearrangement positive, includes both chronic phase andmyeloid blast crisis, whole blood .c 4087 to 4712 625 to 1       625/629
(99 %)
13 diff
(98.0 %id)
AW613332 2 pooled high-grade transitional celltumors, genitourinary tract .a 3904 to 4459 560 to 5   tiling clone,   556/560
(99 %)
0 diff
(100 %id)
AW629747 2 pooled high-grade transitional celltumors, genitourinary tract .a 2413 to 2952 10 to 549       540/549
(98 %)
6 diff
(99.0 %id)
BE673090 Prostate .a 1557 to 2187 631 to 1       631/631
(100 %)
4 diff
(99.4 %id)
BF939218 Prostate .c 4255 to 4716 475 to 14   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 462/462
(100 %)
4 diff
(99.2 %id)
BG055155 Prostate .e-u 1 to 654 663 to 10 E3K M6R S7L A8Q K30Q ... tiling clone,   654/663
(98 %)
0 diff
(100 %id)
BG152882 Prostate .a 2153 to 2571 419 to 1       419/419
(100 %)
0 diff
(100 %id)
BE785396 large cell carcinoma, lung .a 33 to 771 1 to 734       734/1040
(70 %)
35 diff
(96.7 %id)
BF211384 bone marrow, from chronic myelogenous leukemia .c 3916 to 4624 1 to 711   AAA   711/780
(91 %)
39 diff
(95.0 %id)
BF687530 brain, glioblastoma .c 4081 to 4695 1 to 614       614/776
(79 %)
21 diff
(97.3 %id)
BG236304 blood, lymphocyte .c 4206 to 4718 513 to 1       513/513
(100 %)
0 diff
(100 %id)
BM126546 Islets of Langerhans, Pancreas .c 3862 to 4395 1 to 535       535/535
(100 %)
2 diff
(99.7 %id)
BM128780 Islets of Langerhans, Pancreas .a 1626 to 2193 570 to 3   fully sequenced,   568/570
(99 %)
6 diff
(99.0 %id)
BM129013 Islets of Langerhans, Pancreas .a 1084 to 1656 1 to 573   fully sequenced,   573/573
(100 %)
1 diff
(99.9 %id)
BQ002136 Chondrosarcoma, Left Pelvis .c 4169 to 4716 565 to 19   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 547/547
(100 %)
3 diff
(99.5 %id)
BQ005329 Chondrosarcoma, Left Pelvis .c 4091 to 4458 379 to 13   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 367/367
(100 %)
1 diff
(99.8 %id)
BM988211 mixed .c 3190 to 3644 473 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 455/455
(100 %)
2 diff
(99.6 %id)
BQ100700 Islets of Langerhans, Pancreas .a 2017 to 2575 559 to 1       559/559
(100 %)
0 diff
(100 %id)
BQ100978 Islets of Langerhans, Pancreas .a 1856 to 2420 1 to 565       565/565
(100 %)
0 diff
(100 %id)
CK823042 Islets of Langerhans, Pancreas .a 2001 to 2575 575 to 1       575/575
(100 %)
0 diff
(100 %id)
CK823043 Islets of Langerhans, Pancreas .a 1856 to 2447 1 to 592       592/592
(100 %)
0 diff
(100 %id)
BQ722004 sympathetic trunk .d 1 to 855 1 to 862   tiling clone,   862/906
(95 %)
14 diff
(98.5 %id)
CB960307 Human Placenta, placenta .a 1 to 773 29 to 802   tiling clone,   775/808
(95 %)
16 diff
(98.1 %id)
CD104624 Pooled-Skin .a 2322 to 2743 1 to 430       430/947
(45 %)
12 diff
(98.8 %id)
CD520958 pooled .c 4506 to 4716 1 to 211   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 211/211
(100 %)
2 diff
(99.1 %id)
CB143773 Liver .a 1612 to 1959 1 to 348       348/348
(100 %)
0 diff
(100 %id)
CB146285 Liver .a 805 to 1371 1 to 567       567/567
(100 %)
1 diff
(99.9 %id)
L15326 prostaglandin .a 41 to 3394 1 to 3357 I438T tiling clone,   3357/3362
(99 %)
11 diff
(99.7 %id)
M90100 umbilical vein .a 36 to 3390 1 to 3371 E165G AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 3371/3371
(100 %)
22 diff
(99.4 %id)
DA670430   .h-u 1 to 531 2 to 532 exact tiling clone, capped   531/531
(100 %)
0 diff
(100 %id)
DA670448   .a 2452 to 3020 2 to 569   capped   568/568
(100 %)
2 diff
(99.7 %id)
DA670627   .a 1 to 546 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DA670802   .a 1 to 546 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DA670870   .a 2225 to 2810 2 to 588   capped   587/587
(100 %)
2 diff
(99.7 %id)
DA671474   .a 1881 to 2447 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
DA671756   .a 1 to 575 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA671987   .a 2302 to 2897 2 to 598   capped   597/597
(100 %)
2 diff
(99.7 %id)
DA672536   .a 2355 to 2949 2 to 596   tiling clone, capped   595/595
(100 %)
2 diff
(99.7 %id)
DA672543   .a 2358 to 2949 2 to 593   capped   592/592
(100 %)
1 diff
(99.9 %id)
DA672566   .a 1 to 599 2 to 600   capped   599/599
(100 %)
0 diff
(100 %id)
DA672971   .a 1 to 591 2 to 592   capped   591/595
(99 %)
2 diff
(99.7 %id)
DA673400   .a 1 to 573 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA673460   .a 1 to 571 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA673694   .g-u 1 to 581 2 to 582 exact tiling clone, capped   581/581
(100 %)
1 diff
(99.9 %id)
DA673907   .a 2349 to 2744 2 to 397   capped   396/396
(100 %)
1 diff
(99.8 %id)
DA673991   .a 1827 to 2416 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DA674388   .a 2344 to 2942 2 to 597   capped   596/596
(100 %)
4 diff
(99.4 %id)
DA674666   .f 1 to 576 2 to 578 V11G L12P A13G L14A S15Q ... tiling clone, capped   577/577
(100 %)
1 diff
(99.9 %id)
DA674771   .a 1 to 570 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA675888   .a 1 to 575 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA675940   .a 2451 to 3036 2 to 587   capped   586/586
(100 %)
1 diff
(99.9 %id)
DA675968   .a 1 to 590 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DA676086   .a 2486 to 3074 2 to 591   capped   590/590
(100 %)
2 diff
(99.7 %id)
DA676702   .a 1 to 573 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DA676889   .a 1 to 498 2 to 499   capped   498/498
(100 %)
1 diff
(99.8 %id)
DA677048   .a 1 to 546 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DA678032   .a 1 to 582 3 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
NM_000963.2   .a 1 to 4487 6 to 4492 exact RefSeq, AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 4492/4492
(100 %)
0 diff
(100 %id)
DA882455   .a 1 to 545 3 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
DA887945   .a 2450 to 3015 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
TI_1948139443   .a 13 to 773 172 to 932       761/1140
(66 %)
16 diff
(98.6 %id)
TI_1948139444   .a 13 to 852 170 to 1014       845/1114
(75 %)
25 diff
(97.8 %id)
TI_1948139445   .c 2818 to 3662 1014 to 172   tiling clone,   843/1311
(64 %)
0 diff
(100 %id)
TI_1948139683   .a 111 to 600 135 to 625       491/1321
(37 %)
46 diff
(96.6 %id)
TI_1948139684   .a 129 to 854 116 to 839       724/1376
(52 %)
37 diff
(97.4 %id)
TI_1948139685   .a 1101 to 1953 974 to 118       857/1288
(66 %)
18 diff
(98.7 %id)
TI_1948139945   .a 129 to 844 125 to 841       717/1435
(49 %)
17 diff
(98.9 %id)
TI_1948139946   .a 129 to 773 120 to 765       646/1330
(48 %)
12 diff
(99.1 %id)
TI_1948139947   .a 1150 to 1953 921 to 117       805/1338
(60 %)
17 diff
(98.8 %id)
TI_1948139948   .a 1451 to 1953 626 to 118       509/1475
(34 %)
33 diff
(97.8 %id)
TI_1948140198   .a 129 to 989 122 to 980       859/1344
(63 %)
33 diff
(97.6 %id)
TI_1948140199   .a 129 to 855 119 to 847       729/1283
(56 %)
15 diff
(98.9 %id)
TI_1948140200   .a 1102 to 1953 972 to 118       855/1286
(66 %)
17 diff
(98.7 %id)
BP335244 coronary artery .a 1 to 582 2 to 583       583/583
(100 %)
0 diff
(100 %id)
BP335415 coronary artery .a 1 to 582 2 to 582       582/582
(100 %)
5 diff
(99.2 %id)
BP335898 coronary artery .a 7 to 591 1 to 585       585/587
(99 %)
3 diff
(99.5 %id)
BP336843 coronary artery .a 1 to 591 2 to 592       592/593
(99 %)
2 diff
(99.7 %id)
BP337788 coronary artery .a 1 to 580 2 to 581       581/583
(99 %)
3 diff
(99.5 %id)
BP337860 coronary artery .a 1 to 590 2 to 592       592/592
(100 %)
1 diff
(99.9 %id)
DA956826 Spleen .g-u 1 to 556 2 to 558 exact capped   557/557
(100 %)
2 diff
(99.7 %id)
DA994617 synovial membrane tissue from rheumatioidarthritis .a 9 to 567 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
T29235 adrenal gland, Bone .a 1628 to 1884 1 to 257       257/257
(100 %)
2 diff
(99.3 %id)
DN995052 brain, whole brain .a 8 to 768 1 to 762       762/762
(100 %)
3 diff
(99.7 %id)
DB019295 esophageal, tumor tissue .a 1 to 526 3 to 528   capped   527/527
(100 %)
0 diff
(100 %id)
TI_149306731   .c 3962 to 4741 870 to 97   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 774/921
(84 %)
13 diff
(98.6 %id)
TI_154012347   .c 4217 to 4716 621 to 122   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 500/500
(100 %)
1 diff
(99.8 %id)
TI_154103738   .c 4014 to 4716 789 to 91   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 699/793
(88 %)
30 diff
(96.3 %id)
TI_227715250   .a 1706 to 2570 946 to 87   AAA   860/977
(88 %)
11 diff
(98.9 %id)
DB223983 trachea .a 1 to 566 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
BQ025834 placenta .c 4307 to 4716 427 to 19   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 409/409
(100 %)
2 diff
(99.6 %id)
BM978796 lung, Primary Lung Epithelial Cells .c 4053 to 4741 702 to 16   tiling clone, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 687/687
(100 %)
2 diff
(99.8 %id)
CB243167 Human Lung Epithelial cells, lung .c 3060 to 3644 603 to 19   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 585/594
(98 %)
1 diff
(99.9 %id)
CA436148 lung, Metastatic Chondrosarcoma .c 4238 to 4716 497 to 19   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 479/479
(100 %)
1 diff
(99.8 %id)
CA445948 Chondrosarcoma, Left Pelvis .c 4316 to 4716 421 to 19   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 403/403
(100 %)
2 diff
(99.6 %id)
BQ574350 Chondrosarcoma Grade II, Left Pelvis .c 3518 to 4147 649 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 631/631
(100 %)
2 diff
(99.7 %id)
CA308732 Alveolar Macrophage, lung .a 1593 to 2187 612 to 19   AAA   594/594
(100 %)
11 diff
(98.2 %id)
CA309056 Alveolar Macrophage, lung .a 1882 to 2570 707 to 19   AAA   689/689
(100 %)
2 diff
(99.8 %id)
CD365731 Alveolar Macrophage, lung .a 1842 to 2570 744 to 17   AAA   728/728
(100 %)
1 diff
(99.9 %id)
AW051749 Kidney .a 1101 to 1953 974 to 118     This clone was ignored 857/1288
(66 %)
18 diff
(98.7 %id)
TI_1948139945   .a 129 to 844 125 to 841       717/1435
(49 %)
17 diff
(98.9 %id)
TI_1948139946   .a 129 to 773 120 to 765       646/1330
(48 %)
12 diff
(99.1 %id)
TI_1948139947   .a 1150 to 1953 921 to 117       805/1338
(60 %)
17 diff
(98.8 %id)
TI_1948139948   .a 1451 to 1953 626 to 118       509/1475
(34 %)
33 diff
(97.8 %id)
TI_1948140198   .a 129 to 989 122 to 980       859/1344
(63 %)
33 diff
(97.6 %id)
TI_1948140199   .a 129 to 855 119 to 847       729/1283
(56 %)
15 diff
(98.9 %id)
TI_1948140200   .a 1102 to 1953 972 to 118       855/1286
(66 %)
17 diff
(98.7 %id)
BP335244 coronary artery .a 1 to 582 2 to 583       583/583
(100 %)
0 diff
(100 %id)
BP335415 coronary artery .a 1 to 582 2 to 582       582/582
(100 %)
5 diff
(99.2 %id)
BP335898 coronary artery .a 7 to 591 1 to 585       585/587
(99 %)
3 diff
(99.5 %id)
BP336843 coronary artery .a 1 to 591 2 to 592       592/593
(99 %)
2 diff
(99.7 %id)
BP337788 coronary artery .a 1 to 580 2 to 581       581/583
(99 %)
3 diff
(99.5 %id)
BP337860 coronary artery .a 1 to 590 2 to 592       592/592
(100 %)
1 diff
(99.9 %id)
DA956826 Spleen .g-u 1 to 556 2 to 558 exact capped   557/557
(100 %)
2 diff
(99.7 %id)
DA994617 synovial membrane tissue from rheumatioidarthritis .a 9 to 567 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
T29235 adrenal gland, Bone .a 1628 to 1884 1 to 257       257/257
(100 %)
2 diff
(99.3 %id)
T29235 adrenal gland, Bone .a 1628 to 1884 1 to 257       257/257
(100 %)
2 diff
(99.3 %id)
DN995052 brain, whole brain .a 8 to 768 1 to 762       762/762
(100 %)
3 diff
(99.7 %id)
DN995052 brain, whole brain .a 8 to 768 1 to 762       762/762
(100 %)
3 diff
(99.7 %id)
DB019295 esophageal, tumor tissue .a 1 to 526 3 to 528   capped   527/527
(100 %)
0 diff
(100 %id)
TI_149306731   .c 3962 to 4741 870 to 97   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 774/921
(84 %)
13 diff
(98.6 %id)
TI_154012347   .c 4217 to 4716 621 to 122   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 500/500
(100 %)
1 diff
(99.8 %id)
TI_154103738   .c 4014 to 4716 789 to 91   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 699/793
(88 %)
30 diff
(96.3 %id)
TI_227715250   .a 1706 to 2570 946 to 87   AAA   860/977
(88 %)
11 diff
(98.9 %id)
DB223983 trachea .a 1 to 566 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
BQ025834 placenta .c 4307 to 4716 427 to 19   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 409/409
(100 %)
2 diff
(99.6 %id)
BM978796 lung, Primary Lung Epithelial Cells .c 4053 to 4741 702 to 16   tiling clone, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 687/687
(100 %)
2 diff
(99.8 %id)
BM978796 lung, Primary Lung Epithelial Cells .c 4053 to 4741 702 to 16   tiling clone, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 687/687
(100 %)
2 diff
(99.8 %id)
CB243167 Human Lung Epithelial cells, lung .c 3060 to 3644 603 to 19   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 585/594
(98 %)
1 diff
(99.9 %id)
CB243167 Human Lung Epithelial cells, lung .c 3060 to 3644 603 to 19   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 585/594
(98 %)
1 diff
(99.9 %id)
CA436148 lung, Metastatic Chondrosarcoma .c 4238 to 4716 497 to 19   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 479/479
(100 %)
1 diff
(99.8 %id)
CA436148 lung, Metastatic Chondrosarcoma .c 4238 to 4716 497 to 19   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 479/479
(100 %)
1 diff
(99.8 %id)
CA445948 Chondrosarcoma, Left Pelvis .c 4316 to 4716 421 to 19   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 403/403
(100 %)
2 diff
(99.6 %id)
CA445948 Chondrosarcoma, Left Pelvis .c 4316 to 4716 421 to 19   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 403/403
(100 %)
2 diff
(99.6 %id)
BQ574350 Chondrosarcoma Grade II, Left Pelvis .c 3518 to 4147 649 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 631/631
(100 %)
2 diff
(99.7 %id)
BQ574350 Chondrosarcoma Grade II, Left Pelvis .c 3518 to 4147 649 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 631/631
(100 %)
2 diff
(99.7 %id)
CA308732 Alveolar Macrophage, lung .a 1593 to 2187 612 to 19   AAA   594/594
(100 %)
11 diff
(98.2 %id)
CA308732 Alveolar Macrophage, lung .a 1593 to 2187 612 to 19   AAA   594/594
(100 %)
11 diff
(98.2 %id)
CA309056 Alveolar Macrophage, lung .a 1882 to 2570 707 to 19   AAA   689/689
(100 %)
2 diff
(99.8 %id)
CA309056 Alveolar Macrophage, lung .a 1882 to 2570 707 to 19   AAA   689/689
(100 %)
2 diff
(99.8 %id)
CD365731 Alveolar Macrophage, lung .a 1842 to 2570 744 to 17   AAA   728/728
(100 %)
1 diff
(99.9 %id)
CD365731 Alveolar Macrophage, lung .a 1842 to 2570 744 to 17   AAA   728/728
(100 %)
1 diff
(99.9 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u, .f, .g-u, .h-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI