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Gene PRDM5TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
83 supporting clones for gene PRDM5 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AA249778   .b 4333 to 4587 1 to 254   tiling clone,   254/254
(100 %)
6 diff
(97.7 %id)
AA332576 Embryo, 8 weeks .b 2068 to 2369 1 to 304       304/305
(99 %)
4 diff
(98.7 %id)
AF272897   .a 156 to 2480 1 to 2325 R261K tiling clone, AAA Possibly primed on the genome, locally A rich (16/19 A in genome downstream of last aligned base) 2325/2325
(100 %)
3 diff
(99.9 %id)
AK056352   .i 159 to 2495 1 to 2337 exact tiling clone, available from FLJ,   2337/2337
(100 %)
4 diff
(99.9 %id)
AK310958 trachea .e 1 to 1249 1 to 1249 exact tiling clone,   1249/1249
(100 %)
1 diff
(100.0 %id)
AK314293   .d 1 to 2396 2 to 2397 exact tiling clone,   2397/2397
(100 %)
2 diff
(100.0 %id)
BC121037 PCR rescued clones .b 1 to 2133 1 to 2133 exact tiling clone,   2133/2133
(100 %)
3 diff
(99.9 %id)
BC121038 PCR rescued clones .c 1 to 2047 1 to 2047 exact tiling clone,   2047/2047
(100 %)
0 diff
(100 %id)
DA044580 bladder .a 179 to 742 2 to 566   capped   565/565
(100 %)
2 diff
(99.7 %id)
BQ353306 head_neck .h 26 to 560 56 to 589   tiling clone,   534/590
(90 %)
11 diff
(98.2 %id)
BQ353307 head_neck .h 1 to 521 529 to 9 exact tiling clone,   521/529
(98 %)
2 diff
(99.7 %id)
BQ353744 head_neck .h 51 to 559 509 to 5       505/509
(99 %)
4 diff
(99.3 %id)
DA168507 amygdala .i 130 to 706 2 to 579 V6X P7A D8G R9Q F10V ... capped   578/578
(100 %)
1 diff
(99.9 %id)
DA174328 amygdala .b 2059 to 2640 2 to 583   tiling clone, capped   582/582
(100 %)
2 diff
(99.7 %id)
DA179963 amygdala .i 149 to 718 2 to 571 exact capped   570/570
(100 %)
1 diff
(99.9 %id)
DA233242 brain .m 1 to 575 2 to 576 exact tiling clone, capped   575/575
(100 %)
2 diff
(99.7 %id)
DA314451 hippocampus .a 12 to 592 2 to 582   capped   581/581
(100 %)
1 diff
(99.9 %id)
BX089644 uterus .o-u 1 to 743 1 to 743 exact tiling clone,   743/743
(100 %)
1 diff
(99.9 %id)
BX112044 pooled .a 619 to 1272 654 to 1     Submitted on the opposite strand 654/654
(100 %)
1 diff
(99.9 %id)
CN283711 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 3713 to 4383 13 to 685   tiling clone,   673/685
(98 %)
6 diff
(99.2 %id)
CN285634 embryonic stem cells, cell lines H1, H7, andH9 .b 2315 to 2971 1 to 657   tiling clone,   657/657
(100 %)
3 diff
(99.6 %id)
CA394675 eye, RPE/choroid .r-u 1 to 569 1 to 568 exact tiling clone,   568/568
(100 %)
4 diff
(99.3 %id)
DA436033 tongue, tumor tissue .i 264 to 826 2 to 564 exact capped   563/563
(100 %)
0 diff
(100 %id)
DA460636 tongue, tumor tissue .a 225 to 802 2 to 579   tiling clone, capped   578/578
(100 %)
0 diff
(100 %id)
AV710759 adrenal cortico adenoma for Cushing'ssyndrome .i 799 to 1595 1 to 790       790/792
(99 %)
18 diff
(97.8 %id)
BX504012   .a 68 to 602 1 to 535       535/535
(100 %)
1 diff
(99.9 %id)
BX504031   .a 68 to 369 1 to 302       302/302
(100 %)
1 diff
(99.7 %id)
AL710704 human skeletal muscle .a 23 to 474 1 to 452       452/452
(100 %)
2 diff
(99.6 %id)
BX498792 Liver .a 1625 to 2179 1 to 555       555/555
(100 %)
0 diff
(100 %id)
BX498497 Liver .i 76 to 660 1 to 586 N95D     586/586
(100 %)
2 diff
(99.7 %id)
BX646150   .a 1 to 557 1 to 557   tiling clone,   557/557
(100 %)
2 diff
(99.7 %id)
BX955944   .a 1018 to 1409 1 to 392   tiling clone,   392/392
(100 %)
2 diff
(99.5 %id)
EL734198 mixed .i 266 to 600 1 to 335       335/502
(66 %)
1 diff
(99.9 %id)
DA542051 lung .a 163 to 754 2 to 593   capped   592/592
(100 %)
1 diff
(99.9 %id)
DB457148 testis .k 1 to 500 1 to 500 exact tiling clone,   500/500
(100 %)
1 diff
(99.8 %id)
DB522594 testis .a 2034 to 2474 1 to 441   AAA Submitted on the opposite strand 441/441
(100 %)
1 diff
(99.8 %id)
BY796091 eye .p-u 1 to 607 1 to 607 V7G tiling clone,   607/607
(100 %)
1 diff
(99.9 %id)
N24000 melanocyte .b 4584 to 5039 458 to 1       458/458
(100 %)
3 diff
(99.4 %id)
AA017124 eye, retina .b 4636 to 5040 407 to 1       407/407
(100 %)
2 diff
(99.6 %id)
AA018357 eye, retina .b 2657 to 3126 12 to 481       470/481
(97 %)
6 diff
(98.8 %id)
AA029888 uterus .b 4727 to 5042 315 to 1   tiling clone, fully sequenced,   315/315
(100 %)
0 diff
(100 %id)
AA030027 uterus .b 4396 to 4757 1 to 362   fully sequenced,   362/362
(100 %)
0 diff
(100 %id)
AA033695 uterus .o-u 41 to 461 1 to 424       424/424
(100 %)
3 diff
(99.3 %id)
AA034212 uterus .o-u 593 to 810 218 to 1   tiling clone,   218/218
(100 %)
0 diff
(100 %id)
AA424447   .i 2002 to 2471 1 to 470   tiling clone,   470/470
(100 %)
0 diff
(100 %id)
AA884744 pooled .a 235 to 541 1 to 305     Submitted on the opposite strand 305/305
(100 %)
2 diff
(99.4 %id)
AA907829 pooled .b 4762 to 5014 253 to 1       253/253
(100 %)
0 diff
(100 %id)
AA917968 pooled .a 248 to 590 1 to 342     Submitted on the opposite strand 342/342
(100 %)
1 diff
(99.8 %id)
AI016226   .b 4616 to 5034 422 to 4       419/422
(99 %)
0 diff
(100 %id)
AI031874 brain, glioblastoma (pooled) .e 1022 to 1402 397 to 18   tiling clone, AAA Possibly primed on the genome, locally A rich (16/19 A in genome downstream of last aligned base) 380/380
(100 %)
2 diff
(99.5 %id)
AI339957   .b 2726 to 3196 471 to 1   tiling clone,   471/471
(100 %)
0 diff
(100 %id)
AI432007 adenocarcinoma, Pancreas .a 2138 to 2335 229 to 32   AAA Possibly primed on the genome, locally A rich (16/19 A in genome downstream of last aligned base) 198/198
(100 %)
3 diff
(98.5 %id)
AI810960 Prostate .i 1362 to 1835 474 to 1   tiling clone,   474/474
(100 %)
0 diff
(100 %id)
AI720623 colon .b 4581 to 5028 448 to 1       448/448
(100 %)
3 diff
(99.4 %id)
AI708990 aorta .o-u 370 to 803 439 to 8 exact     432/439
(98 %)
0 diff
(100 %id)
BI495236 cochlea, ear .b 4642 to 5039 415 to 18   fully sequenced, AAA Possibly primed on the genome, locally A rich (16/19 A in genome downstream of last aligned base) 398/398
(100 %)
0 diff
(100 %id)
BI495237 cochlea, ear .b 4602 to 5039 8 to 445   fully sequenced, AAA Possibly primed on the genome, locally A rich (16/19 A in genome downstream of last aligned base) 438/445
(98 %)
6 diff
(98.7 %id)
AW341546 pooled .a 231 to 749 1 to 519     Submitted on the opposite strand 519/519
(100 %)
6 diff
(98.9 %id)
BF939745 brain, glioblastoma (pooled) .e 1057 to 1401 345 to 1   tiling clone,   345/346
(99 %)
0 diff
(100 %id)
BC066942 Brain, hippocampus .i 4 to 1837 1 to 1834 exact tiling clone, available from MGC, AAA   1834/1834
(100 %)
6 diff
(99.7 %id)
BF966790 brain, hippocampus .i 981 to 1788 805 to 5   available from MGC,   801/1014
(78 %)
0 diff
(100 %id)
BG036759 brain, hippocampus .i 1 to 666 2 to 664 T25H A26G L68C Y69T I70F ... available from MGC,   661/667
(99 %)
21 diff
(96.9 %id)
BG717199 testis .l 1 to 698 3 to 702 C45V D46I L47W A48L F49L ... tiling clone,   702/702
(100 %)
7 diff
(99.1 %id)
BM510611.
matches multiple genes
insulinoma, Pancreas .b 4428 to 5039 627 to 16   tiling clone, AAA Possibly primed on the genome, locally A rich (16/19 A in genome downstream of last aligned base), also hits gene EEF1A2 612/612
(100 %)
0 diff
(100 %id)
BM563688 brain, medulla .g 1 to 950 19 to 973 K5I tiling clone,   968/1059
(91 %)
30 diff
(97.2 %id)
CB856951 anterior tongue, pooled .q 1 to 599 1 to 599 exact tiling clone,   599/599
(100 %)
0 diff
(100 %id)
BQ899370 sciatic nerve .i 1173 to 2054 1 to 884   tiling clone,   884/889
(99 %)
34 diff
(96.2 %id)
CX165253 human embryonic stem cells differentiated toan early endodermal cell type .b 3395 to 4198 1 to 803   tiling clone,   803/803
(100 %)
1 diff
(99.9 %id)
CD300170 testis .n 1 to 847 1 to 851 E82G E83R C84M K85* tiling clone,   851/852
(99 %)
9 diff
(99.0 %id)
NM_018699.2   .a 2 to 2480 1 to 2479 exact RefSeq, AAA Possibly primed on the genome, locally A rich (16/19 A in genome downstream of last aligned base) 2479/2479
(100 %)
0 diff
(100 %id)
DA705196   .i 160 to 698 2 to 540 exact capped   539/539
(100 %)
0 diff
(100 %id)
DB323945   .i 1970 to 2495 527 to 1       527/527
(100 %)
2 diff
(99.7 %id)
DA715820   .a 180 to 719 2 to 541   capped   540/540
(100 %)
1 diff
(99.9 %id)
DA759817   .a 179 to 721 2 to 545   capped   544/544
(100 %)
2 diff
(99.7 %id)
TI_1948208080   .i 266 to 600 139 to 473       335/1395
(24 %)
8 diff
(99.5 %id)
TI_1948208341   .i 266 to 600 469 to 135       335/1355
(24 %)
2 diff
(99.9 %id)
DR006066 Prostate .a 172 to 423 1 to 254       254/254
(100 %)
3 diff
(98.9 %id)
DB029281 testis .c 485 to 1086 2 to 603   capped   602/602
(100 %)
0 diff
(100 %id)
TI_159714011   .f 1 to 927 990 to 87 R2V W3* tiling clone, AAA Possibly primed on the genome, locally A rich (16/19 A in genome downstream of last aligned base) 904/1054
(85 %)
27 diff
(97.5 %id)
DB221247 trachea .i 130 to 689 2 to 562 V6X P7A D8G R9Q F10V ... capped   561/561
(100 %)
1 diff
(99.9 %id)
DB238994 trachea .a 166 to 687 2 to 523   capped   522/522
(100 %)
0 diff
(100 %id)
BU754532 placenta .b 4755 to 5035 296 to 17   AAA Possibly primed on the genome, locally A rich (16/19 A in genome downstream of last aligned base) 280/280
(100 %)
7 diff
(97.5 %id)
CB852042 Human Lung Epithelial cells, lung .f 211 to 927 734 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (16/19 A in genome downstream of last aligned base) 716/716
(100 %)
3 diff
(99.6 %id)
BQ448187 Knee, Osteoarthritic Cartilage .b 4297 to 5036 758 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (16/19 A in genome downstream of last aligned base) 740/740
(100 %)
2 diff
(99.8 %id)
BQ774569 Chondrosarcoma Grade II, Left Pelvis .b 4412 to 5035 642 to 19   AAA Possibly primed on the genome, locally A rich (16/19 A in genome downstream of last aligned base) 624/624
(100 %)
0 diff
(100 %id)
DB278810 uterus .j 1 to 547 2 to 548 exact tiling clone, capped   547/547
(100 %)
0 diff
(100 %id)
DB291881 uterus .a 135 to 706 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
H70443 liver and spleen .i 266 to 600 469 to 135       335/1355
(24 %)
2 diff
(99.9 %id)
H70444 liver and spleen .a 172 to 423 1 to 254       254/254
(100 %)
3 diff
(98.9 %id)
DB029281 testis .c 485 to 1086 2 to 603   capped   602/602
(100 %)
0 diff
(100 %id)
TI_159714011   .f 1 to 927 990 to 87 R2V W3* tiling clone, AAA Possibly primed on the genome, locally A rich (16/19 A in genome downstream of last aligned base) 904/1054
(85 %)
27 diff
(97.5 %id)
DB221247 trachea .i 130 to 689 2 to 562 V6X P7A D8G R9Q F10V ... capped   561/561
(100 %)
1 diff
(99.9 %id)
DB238994 trachea .a 166 to 687 2 to 523   capped   522/522
(100 %)
0 diff
(100 %id)
BU754532 placenta .b 4755 to 5035 296 to 17   AAA Possibly primed on the genome, locally A rich (16/19 A in genome downstream of last aligned base) 280/280
(100 %)
7 diff
(97.5 %id)
CB852042 Human Lung Epithelial cells, lung .f 211 to 927 734 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (16/19 A in genome downstream of last aligned base) 716/716
(100 %)
3 diff
(99.6 %id)
CB852042 Human Lung Epithelial cells, lung .f 211 to 927 734 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (16/19 A in genome downstream of last aligned base) 716/716
(100 %)
3 diff
(99.6 %id)
BQ448187 Knee, Osteoarthritic Cartilage .b 4297 to 5036 758 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (16/19 A in genome downstream of last aligned base) 740/740
(100 %)
2 diff
(99.8 %id)
BQ448187 Knee, Osteoarthritic Cartilage .b 4297 to 5036 758 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (16/19 A in genome downstream of last aligned base) 740/740
(100 %)
2 diff
(99.8 %id)
BQ774569 Chondrosarcoma Grade II, Left Pelvis .b 4412 to 5035 642 to 19   AAA Possibly primed on the genome, locally A rich (16/19 A in genome downstream of last aligned base) 624/624
(100 %)
0 diff
(100 %id)
BQ774569 Chondrosarcoma Grade II, Left Pelvis .b 4412 to 5035 642 to 19   AAA Possibly primed on the genome, locally A rich (16/19 A in genome downstream of last aligned base) 624/624
(100 %)
0 diff
(100 %id)
DB278810 uterus .j 1 to 547 2 to 548 exact tiling clone, capped   547/547
(100 %)
0 diff
(100 %id)
DB291881 uterus .a 135 to 706 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o-u, .p-u, .q, .r-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC