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Gene MYOD1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
91 supporting clones for gene MYOD1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK314968 pericardium .a 1 to 1178 2 to 1179 A229T tiling clone,   1179/1179
(100 %)
1 diff
(100.0 %id)
BT007157   .a 216 to 1176 1 to 961       961/963
(99 %)
1 diff
(99.9 %id)
BX283932 muscle, rhabdomyosarcoma .a 160 to 663 1 to 504       504/504
(100 %)
2 diff
(99.7 %id)
CR612159 Placenta Cot 25-normalized .a 153 to 1749 1 to 1597 exact     1597/1597
(100 %)
0 diff
(100 %id)
BX359423 Placenta Cot 25-normalized .a 939 to 1749 810 to 1       810/1038
(78 %)
11 diff
(99.0 %id)
BX359424 Placenta Cot 25-normalized .a 191 to 924 38 to 768       731/1055
(69 %)
7 diff
(99.4 %id)
AA080978   .a 1744 to 1959 1 to 214   tiling clone,   214/218
(98 %)
9 diff
(95.9 %id)
AA429138   .a 945 to 1178 1 to 235       235/235
(100 %)
15 diff
(93.7 %id)
AI300241 placenta .a 1521 to 1800 298 to 19   AAA   280/280
(100 %)
0 diff
(100 %id)
AI868290 pooled .a 1505 to 1801 299 to 3       297/302
(98 %)
0 diff
(100 %id)
BE250506 muscle, rhabdomyosarcoma .a 1006 to 1758 759 to 2       758/1019
(74 %)
0 diff
(100 %id)
BE250705 muscle, rhabdomyosarcoma .a 180 to 962 1 to 780       780/805
(96 %)
9 diff
(98.9 %id)
BE299697 muscle, rhabdomyosarcoma .a 1088 to 1741 664 to 2       663/665
(99 %)
0 diff
(100 %id)
BE299732 muscle, rhabdomyosarcoma .a 293 to 1033 1 to 736       736/913
(80 %)
16 diff
(98.3 %id)
BE300295 muscle, rhabdomyosarcoma .a 1013 to 1748 730 to 1       730/954
(76 %)
63 diff
(93.4 %id)
BE300478 muscle, rhabdomyosarcoma .a 273 to 923 37 to 700       664/993
(66 %)
10 diff
(99.0 %id)
BE300228 muscle, rhabdomyosarcoma .a 1117 to 1738 646 to 11       636/745
(85 %)
0 diff
(100 %id)
BE299484 muscle, rhabdomyosarcoma .a 1098 to 1750 660 to 2       659/660
(99 %)
0 diff
(100 %id)
BE299768 muscle, rhabdomyosarcoma .a 177 to 1021 1 to 851       849/900
(94 %)
35 diff
(96.2 %id)
AW410335 muscle, rhabdomyosarcoma .a 12 to 311 26 to 325       300/325
(92 %)
6 diff
(98.2 %id)
BC000353 Muscle, rhabdomyosarcoma .a 12 to 1805 10 to 1803 exact tiling clone, AAA   1794/2445
(73 %)
2 diff
(100.0 %id)
BF219762 muscle, rhabdomyosarcoma .a 31 to 668 1 to 636       636/636
(100 %)
3 diff
(99.6 %id)
AW411435 muscle, rhabdomyosarcoma .a 110 to 642 21 to 553       533/553
(96 %)
6 diff
(99.0 %id)
AW411436 muscle, rhabdomyosarcoma .a 1244 to 1800 594 to 38   AAA   557/557
(100 %)
1 diff
(99.9 %id)
BE019098.
matches multiple genes
muscle, rhabdomyosarcoma .a 14 to 636 1 to 623     also hits gene C20orf3 623/623
(100 %)
1 diff
(99.9 %id)
BE019102 muscle, rhabdomyosarcoma .a 14 to 636 1 to 624       624/624
(100 %)
7 diff
(98.9 %id)
BE019350 muscle, rhabdomyosarcoma .a 25 to 659 1 to 633       633/633
(100 %)
7 diff
(98.9 %id)
BE019219 muscle, rhabdomyosarcoma .a 197 to 626 1 to 429       429/429
(100 %)
6 diff
(98.7 %id)
BE298382 muscle, rhabdomyosarcoma .a 32 to 705 1 to 668       668/739
(90 %)
13 diff
(98.3 %id)
BE298077 muscle, rhabdomyosarcoma .a 1188 to 1672 68 to 552       485/552
(87 %)
6 diff
(99.0 %id)
BE298779 muscle, rhabdomyosarcoma .a 306 to 919 1 to 613       613/614
(99 %)
3 diff
(99.6 %id)
BE299344 muscle, rhabdomyosarcoma .a 273 to 913 53 to 694       642/696
(92 %)
11 diff
(98.5 %id)
BE298729 muscle, rhabdomyosarcoma .a 31 to 649 1 to 632       632/634
(99 %)
20 diff
(96.9 %id)
BE298608 muscle, rhabdomyosarcoma .a 31 to 700 1 to 689       689/708
(97 %)
47 diff
(93.4 %id)
BE294401 muscle, rhabdomyosarcoma .a 32 to 659 1 to 637       637/637
(100 %)
15 diff
(97.7 %id)
BE296570 muscle, rhabdomyosarcoma .a 527 to 1106 1 to 580       580/580
(100 %)
0 diff
(100 %id)
BE295216 muscle, rhabdomyosarcoma .a 326 to 724 199 to 597       399/608
(65 %)
2 diff
(99.7 %id)
BE297743 muscle, rhabdomyosarcoma .a 12 to 756 38 to 778       741/786
(94 %)
14 diff
(98.3 %id)
BE295590 muscle, rhabdomyosarcoma .a 31 to 460 1 to 430       430/433
(99 %)
1 diff
(99.8 %id)
BE297539 muscle, rhabdomyosarcoma .a 127 to 822 1 to 692       692/720
(96 %)
16 diff
(97.8 %id)
BE270155 Burkitt lymphoma, lymph .a 31 to 733 1 to 699       699/719
(97 %)
14 diff
(98.1 %id)
BF203571 muscle, rhabdomyosarcoma .a 112 to 835 1 to 719       719/1058
(67 %)
20 diff
(98.2 %id)
BF205042 muscle, rhabdomyosarcoma .a 11 to 742 1 to 726       726/730
(99 %)
13 diff
(98.3 %id)
BF204754 muscle, rhabdomyosarcoma .a 11 to 621 1 to 611       611/611
(100 %)
1 diff
(99.9 %id)
BF205507 muscle, rhabdomyosarcoma .a 157 to 904 1 to 740       740/826
(89 %)
12 diff
(98.6 %id)
BF204180 muscle, rhabdomyosarcoma .a 110 to 791 1 to 669       669/929
(72 %)
14 diff
(98.5 %id)
BF204506 muscle, rhabdomyosarcoma .a 118 to 819 1 to 691       691/692
(99 %)
14 diff
(98.0 %id)
BF205585 muscle, rhabdomyosarcoma .a 113 to 841 1 to 721       721/865
(83 %)
15 diff
(98.3 %id)
BF205680 muscle, rhabdomyosarcoma .a 157 to 851 1 to 688       688/890
(77 %)
15 diff
(98.4 %id)
BF203994 muscle, rhabdomyosarcoma .a 463 to 983 1 to 520       520/520
(100 %)
3 diff
(99.5 %id)
BF204151 muscle, rhabdomyosarcoma .a 354 to 1116 1 to 750       750/807
(92 %)
26 diff
(96.8 %id)
BF303736 muscle, rhabdomyosarcoma .a 776 to 845 519 to 590       553/598
(92 %)
55 diff
(90.9 %id)
BF304059 muscle, rhabdomyosarcoma .a 1 to 735 7 to 732       732/757
(96 %)
19 diff
(97.5 %id)
BF309303 muscle, rhabdomyosarcoma .a 272 to 991 1 to 713       713/965
(73 %)
17 diff
(98.3 %id)
BF308538 muscle, rhabdomyosarcoma .a 146 to 920 1 to 765       765/829
(92 %)
16 diff
(98.1 %id)
BF304451 muscle, rhabdomyosarcoma .a 112 to 846 1 to 720       720/832
(86 %)
23 diff
(97.3 %id)
BF305128 muscle, rhabdomyosarcoma .a 180 to 438 1 to 259       259/297
(87 %)
4 diff
(98.7 %id)
BF304979 muscle, rhabdomyosarcoma .a 414 to 1190 1 to 753       753/753
(100 %)
27 diff
(96.5 %id)
BF306585 muscle, rhabdomyosarcoma .a 112 to 828 1 to 694       694/850
(81 %)
25 diff
(97.1 %id)
BF307902 muscle, rhabdomyosarcoma .a 11 to 692 1 to 670       670/722
(92 %)
27 diff
(96.3 %id)
BF307976 muscle, rhabdomyosarcoma .a 110 to 904 1 to 774       774/852
(90 %)
34 diff
(96.1 %id)
BF307101 muscle, rhabdomyosarcoma .a 112 to 742 1 to 620       620/955
(64 %)
63 diff
(93.5 %id)
BF307309 muscle, rhabdomyosarcoma .a 113 to 644 1 to 534       534/535
(99 %)
12 diff
(97.8 %id)
BF309452 muscle, rhabdomyosarcoma .a 116 to 838 1 to 725       725/989
(73 %)
13 diff
(98.7 %id)
BF309465 muscle, rhabdomyosarcoma .a 11 to 736 1 to 726       726/991
(73 %)
6 diff
(99.4 %id)
BF310059 muscle, rhabdomyosarcoma .a 160 to 898 1 to 729       729/803
(90 %)
11 diff
(98.7 %id)
BF305438 muscle, rhabdomyosarcoma .a 107 to 638 1 to 526       526/529
(99 %)
17 diff
(96.8 %id)
BF694813 muscle (skeletal) .a 3 to 641 1 to 629       629/846
(74 %)
9 diff
(99.0 %id)
BG825035 muscle, rhabdomyosarcoma .a 11 to 548 1 to 543       543/795
(68 %)
26 diff
(96.8 %id)
BG827263 muscle, rhabdomyosarcoma .a 160 to 774 1 to 617       617/617
(100 %)
5 diff
(99.2 %id)
BG825891 muscle, rhabdomyosarcoma .a 112 to 774 1 to 665       665/665
(100 %)
9 diff
(98.7 %id)
BG826162 muscle, rhabdomyosarcoma .a 11 to 778 1 to 788       788/789
(99 %)
47 diff
(94.1 %id)
BG827731 muscle, rhabdomyosarcoma .a 1215 to 1783 1 to 578       578/797
(72 %)
21 diff
(97.4 %id)
BG827705 muscle, rhabdomyosarcoma .a 181 to 738 1 to 568       568/1114
(50 %)
26 diff
(97.7 %id)
BG827674 muscle, rhabdomyosarcoma .a 109 to 916 1 to 822       822/822
(100 %)
39 diff
(95.3 %id)
BG827855 muscle, rhabdomyosarcoma .a 116 to 853 1 to 747       747/893
(83 %)
29 diff
(96.8 %id)
BG828541 muscle, rhabdomyosarcoma .a 109 to 748 1 to 659       659/1085
(60 %)
30 diff
(97.3 %id)
BG829220 muscle, rhabdomyosarcoma .a 272 to 951 1 to 677       677/678
(99 %)
7 diff
(99.0 %id)
BG828102 muscle, rhabdomyosarcoma .a 112 to 1012 1 to 902       902/909
(99 %)
17 diff
(98.2 %id)
BG828208 muscle, rhabdomyosarcoma .a 105 to 838 1 to 734       734/734
(100 %)
1 diff
(99.9 %id)
BI114877 muscle, rhabdomyosarcoma .a 1194 to 1799 1 to 608       608/777
(78 %)
5 diff
(99.4 %id)
NM_002478.4   .a 1 to 1800 6 to 1805 exact RefSeq, AAA   1805/1805
(100 %)
0 diff
(100 %id)
F18584 pectoral muscle (after mastectomy) .a 1615 to 1806 1 to 192       192/193
(99 %)
4 diff
(98.0 %id)
DA825965 pericardium .a 1 to 547 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
F27857 pectoral muscle (after mastectomy) .a 1435 to 1800 8 to 373   AAA   366/373
(98 %)
9 diff
(97.6 %id)
F25463 pectoral muscle (after mastectomy) .a 1451 to 1765 16 to 329       314/329
(95 %)
6 diff
(98.2 %id)
BU738397 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1253 to 1805 571 to 19   AAA   553/553
(100 %)
2 diff
(99.7 %id)
X17650 skeletal muscle .a 372 to 1801 1 to 1415       1415/1416
(99 %)
24 diff
(98.4 %id)
X56677   .a 97 to 1801 1 to 1691 A177F F178Y Y179A A180P P181G ...     1691/1692
(99 %)
23 diff
(98.7 %id)
BC064493 Muscle, rhabdomyosarcoma .a 463 to 983 1 to 520   available from MGC, AAA This clone was ignored 520/520
(100 %)
3 diff
(99.5 %id)
AW410580 muscle, rhabdomyosarcoma .a 354 to 1116 1 to 750     Suspected internal deletion, suspected internal deletion, this clone was ignored 750/807
(92 %)
26 diff
(96.8 %id)
AW410581 muscle, rhabdomyosarcoma .a 354 to 1116 1 to 750   AAA Suspected internal deletion, suspected internal deletion, this clone was ignored 750/807
(92 %)
26 diff
(96.8 %id)
AW410803 muscle, rhabdomyosarcoma .a 776 to 845 519 to 590     Suspected internal deletion, suspected internal deletion, this clone was ignored 553/598
(92 %)
55 diff
(90.9 %id)
AW410804 muscle, rhabdomyosarcoma .a 776 to 845 519 to 590   AAA Suspected internal deletion, suspected internal deletion, this clone was ignored 553/598
(92 %)
55 diff
(90.9 %id)
BE295620 muscle, rhabdomyosarcoma .a 1 to 735 7 to 732     Suspected internal deletion, this clone was ignored 732/757
(96 %)
19 diff
(97.5 %id)
BF305037 muscle, rhabdomyosarcoma .a 1 to 735 7 to 732     Suspected internal deletion, this clone was ignored 732/757
(96 %)
19 diff
(97.5 %id)
BF306107 muscle, rhabdomyosarcoma .a 272 to 991 1 to 713     Suspected internal deletion, suspected internal deletion, this clone was ignored 713/965
(73 %)
17 diff
(98.3 %id)
BI114827 muscle, rhabdomyosarcoma .a 272 to 991 1 to 713     This clone was ignored 713/965
(73 %)
17 diff
(98.3 %id)
BI115390 muscle, rhabdomyosarcoma .a 146 to 920 1 to 765     This clone was ignored 765/829
(92 %)
16 diff
(98.1 %id)
BF308538 muscle, rhabdomyosarcoma .a 146 to 920 1 to 765       765/829
(92 %)
16 diff
(98.1 %id)
BF304451 muscle, rhabdomyosarcoma .a 112 to 846 1 to 720       720/832
(86 %)
23 diff
(97.3 %id)
BF304451 muscle, rhabdomyosarcoma .a 112 to 846 1 to 720       720/832
(86 %)
23 diff
(97.3 %id)
BF305128 muscle, rhabdomyosarcoma .a 180 to 438 1 to 259       259/297
(87 %)
4 diff
(98.7 %id)
BF305128 muscle, rhabdomyosarcoma .a 180 to 438 1 to 259       259/297
(87 %)
4 diff
(98.7 %id)
BF304979 muscle, rhabdomyosarcoma .a 414 to 1190 1 to 753       753/753
(100 %)
27 diff
(96.5 %id)
BF304979 muscle, rhabdomyosarcoma .a 414 to 1190 1 to 753       753/753
(100 %)
27 diff
(96.5 %id)
BF306585 muscle, rhabdomyosarcoma .a 112 to 828 1 to 694       694/850
(81 %)
25 diff
(97.1 %id)
BF306585 muscle, rhabdomyosarcoma .a 112 to 828 1 to 694       694/850
(81 %)
25 diff
(97.1 %id)
BF307902 muscle, rhabdomyosarcoma .a 11 to 692 1 to 670       670/722
(92 %)
27 diff
(96.3 %id)
BF307902 muscle, rhabdomyosarcoma .a 11 to 692 1 to 670       670/722
(92 %)
27 diff
(96.3 %id)
BF307976 muscle, rhabdomyosarcoma .a 110 to 904 1 to 774       774/852
(90 %)
34 diff
(96.1 %id)
BF307976 muscle, rhabdomyosarcoma .a 110 to 904 1 to 774       774/852
(90 %)
34 diff
(96.1 %id)
BF307101 muscle, rhabdomyosarcoma .a 112 to 742 1 to 620       620/955
(64 %)
63 diff
(93.5 %id)
BF307101 muscle, rhabdomyosarcoma .a 112 to 742 1 to 620       620/955
(64 %)
63 diff
(93.5 %id)
BF307309 muscle, rhabdomyosarcoma .a 113 to 644 1 to 534       534/535
(99 %)
12 diff
(97.8 %id)
BF307309 muscle, rhabdomyosarcoma .a 113 to 644 1 to 534       534/535
(99 %)
12 diff
(97.8 %id)
BF309452 muscle, rhabdomyosarcoma .a 116 to 838 1 to 725       725/989
(73 %)
13 diff
(98.7 %id)
BF309452 muscle, rhabdomyosarcoma .a 116 to 838 1 to 725       725/989
(73 %)
13 diff
(98.7 %id)
BF309465 muscle, rhabdomyosarcoma .a 11 to 736 1 to 726       726/991
(73 %)
6 diff
(99.4 %id)
BF309465 muscle, rhabdomyosarcoma .a 11 to 736 1 to 726       726/991
(73 %)
6 diff
(99.4 %id)
BF310059 muscle, rhabdomyosarcoma .a 160 to 898 1 to 729       729/803
(90 %)
11 diff
(98.7 %id)
BF310059 muscle, rhabdomyosarcoma .a 160 to 898 1 to 729       729/803
(90 %)
11 diff
(98.7 %id)
BF305438 muscle, rhabdomyosarcoma .a 107 to 638 1 to 526       526/529
(99 %)
17 diff
(96.8 %id)
BF305438 muscle, rhabdomyosarcoma .a 107 to 638 1 to 526       526/529
(99 %)
17 diff
(96.8 %id)
BF694813 muscle (skeletal) .a 3 to 641 1 to 629       629/846
(74 %)
9 diff
(99.0 %id)
BG825035 muscle, rhabdomyosarcoma .a 11 to 548 1 to 543       543/795
(68 %)
26 diff
(96.8 %id)
BG825035 muscle, rhabdomyosarcoma .a 11 to 548 1 to 543       543/795
(68 %)
26 diff
(96.8 %id)
BG827263 muscle, rhabdomyosarcoma .a 160 to 774 1 to 617       617/617
(100 %)
5 diff
(99.2 %id)
BG827263 muscle, rhabdomyosarcoma .a 160 to 774 1 to 617       617/617
(100 %)
5 diff
(99.2 %id)
BG825891 muscle, rhabdomyosarcoma .a 112 to 774 1 to 665       665/665
(100 %)
9 diff
(98.7 %id)
BG825891 muscle, rhabdomyosarcoma .a 112 to 774 1 to 665       665/665
(100 %)
9 diff
(98.7 %id)
BG826162 muscle, rhabdomyosarcoma .a 11 to 778 1 to 788       788/789
(99 %)
47 diff
(94.1 %id)
BG826162 muscle, rhabdomyosarcoma .a 11 to 778 1 to 788       788/789
(99 %)
47 diff
(94.1 %id)
BG827731 muscle, rhabdomyosarcoma .a 1215 to 1783 1 to 578       578/797
(72 %)
21 diff
(97.4 %id)
BG827731 muscle, rhabdomyosarcoma .a 1215 to 1783 1 to 578       578/797
(72 %)
21 diff
(97.4 %id)
BG827705 muscle, rhabdomyosarcoma .a 181 to 738 1 to 568       568/1114
(50 %)
26 diff
(97.7 %id)
BG827705 muscle, rhabdomyosarcoma .a 181 to 738 1 to 568       568/1114
(50 %)
26 diff
(97.7 %id)
BG827674 muscle, rhabdomyosarcoma .a 109 to 916 1 to 822       822/822
(100 %)
39 diff
(95.3 %id)
BG827674 muscle, rhabdomyosarcoma .a 109 to 916 1 to 822       822/822
(100 %)
39 diff
(95.3 %id)
BG827855 muscle, rhabdomyosarcoma .a 116 to 853 1 to 747       747/893
(83 %)
29 diff
(96.8 %id)
BG827855 muscle, rhabdomyosarcoma .a 116 to 853 1 to 747       747/893
(83 %)
29 diff
(96.8 %id)
BG828541 muscle, rhabdomyosarcoma .a 109 to 748 1 to 659       659/1085
(60 %)
30 diff
(97.3 %id)
BG828541 muscle, rhabdomyosarcoma .a 109 to 748 1 to 659       659/1085
(60 %)
30 diff
(97.3 %id)
BG829220 muscle, rhabdomyosarcoma .a 272 to 951 1 to 677       677/678
(99 %)
7 diff
(99.0 %id)
BG829220 muscle, rhabdomyosarcoma .a 272 to 951 1 to 677       677/678
(99 %)
7 diff
(99.0 %id)
BG828102 muscle, rhabdomyosarcoma .a 112 to 1012 1 to 902       902/909
(99 %)
17 diff
(98.2 %id)
BG828102 muscle, rhabdomyosarcoma .a 112 to 1012 1 to 902       902/909
(99 %)
17 diff
(98.2 %id)
BG828208 muscle, rhabdomyosarcoma .a 105 to 838 1 to 734       734/734
(100 %)
1 diff
(99.9 %id)
BG828208 muscle, rhabdomyosarcoma .a 105 to 838 1 to 734       734/734
(100 %)
1 diff
(99.9 %id)
BI114877 muscle, rhabdomyosarcoma .a 1194 to 1799 1 to 608       608/777
(78 %)
5 diff
(99.4 %id)
BI114877 muscle, rhabdomyosarcoma .a 1194 to 1799 1 to 608       608/777
(78 %)
5 diff
(99.4 %id)
NM_002478.4   .a 1 to 1800 6 to 1805 exact RefSeq, AAA   1805/1805
(100 %)
0 diff
(100 %id)
F18584 pectoral muscle (after mastectomy) .a 1615 to 1806 1 to 192       192/193
(99 %)
4 diff
(98.0 %id)
DA825965 pericardium .a 1 to 547 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
F27857 pectoral muscle (after mastectomy) .a 1435 to 1800 8 to 373   AAA   366/373
(98 %)
9 diff
(97.6 %id)
F25463 pectoral muscle (after mastectomy) .a 1451 to 1765 16 to 329       314/329
(95 %)
6 diff
(98.2 %id)
BU738397 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1253 to 1805 571 to 19   AAA   553/553
(100 %)
2 diff
(99.7 %id)
BU738397 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1253 to 1805 571 to 19   AAA   553/553
(100 %)
2 diff
(99.7 %id)
X17650 skeletal muscle .a 372 to 1801 1 to 1415       1415/1416
(99 %)
24 diff
(98.4 %id)
X56677   .a 97 to 1801 1 to 1691 A177F F178Y Y179A A180P P181G ...     1691/1692
(99 %)
23 diff
(98.7 %id)
? Gene Summary Gene on genome mRNA Expression Tissue Function, regulation, related genes DCI